Wall clock time and date at job start Mon Mar 30 2020 07:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46861 * 2 1 4 4 O 1.42896 * 109.47077 * 119.99857 * 2 1 3 5 5 C 1.42904 * 113.99938 * 150.00215 * 4 2 1 6 6 C 1.52995 * 109.47390 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47093 * 65.00101 * 6 5 4 8 8 C 1.46896 * 111.00035 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47694 * 34.99734 * 8 7 6 10 10 C 1.50705 * 109.47011 * 274.99710 * 8 7 6 11 11 H 1.07991 * 119.99868 * 122.44001 * 10 8 7 12 12 C 1.37876 * 119.99877 * 302.16480 * 10 8 7 13 13 N 1.31512 * 119.99992 * 6.24478 * 12 10 8 14 14 Si 1.86798 * 120.00170 * 186.24568 * 12 10 8 15 15 H 1.48502 * 109.46873 * 59.99586 * 14 12 10 16 16 H 1.48491 * 109.47410 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47024 * 300.00265 * 14 12 10 18 18 C 1.50701 * 109.47193 * 154.99634 * 8 7 6 19 19 C 1.38235 * 119.99949 * 30.25353 * 18 8 7 20 20 C 1.38244 * 120.00015 * 179.80953 * 19 18 8 21 21 C 1.38239 * 119.99593 * 0.39159 * 20 19 18 22 22 C 1.38230 * 120.00056 * 359.85959 * 21 20 19 23 23 C 1.38234 * 120.00279 * 359.95322 * 22 21 20 24 24 H 1.08996 * 109.47411 * 300.00030 * 1 2 3 25 25 H 1.09002 * 109.46803 * 60.00303 * 1 2 3 26 26 H 1.09005 * 109.46797 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47507 * 240.00338 * 2 1 3 28 28 H 1.09002 * 109.46885 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47599 * 299.99907 * 3 2 1 30 30 H 1.09000 * 109.46693 * 60.00404 * 3 2 1 31 31 H 1.08996 * 109.47150 * 59.99898 * 5 4 2 32 32 H 1.09004 * 109.46889 * 300.00122 * 5 4 2 33 33 H 1.09001 * 109.47305 * 305.00329 * 6 5 4 34 34 H 1.08997 * 109.47402 * 184.99953 * 6 5 4 35 35 H 1.00897 * 111.00243 * 56.04268 * 7 6 5 36 36 H 0.97000 * 120.00027 * 180.02562 * 13 12 10 37 37 H 1.07996 * 119.99812 * 359.97438 * 19 18 8 38 38 H 1.07992 * 119.99608 * 180.22802 * 20 19 18 39 39 H 1.07998 * 119.99106 * 179.83497 * 21 20 19 40 40 H 1.07999 * 119.99677 * 179.97438 * 22 21 20 41 41 H 1.08006 * 120.00172 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9886 6 6 3.6755 -2.0091 2.2941 7 7 2.7231 -3.0839 2.6031 8 6 3.0851 -3.7649 3.8533 9 1 3.5073 -3.0423 4.5516 10 6 4.1030 -4.8380 3.5643 11 1 5.0608 -4.8220 4.0628 12 6 3.8091 -5.8433 2.6676 13 7 2.6930 -5.7998 1.9735 14 14 4.9963 -7.2672 2.4388 15 1 5.1712 -7.9784 3.7306 16 1 4.4524 -8.2075 1.4263 17 1 6.3091 -6.7480 1.9781 18 6 1.8549 -4.3895 4.4595 19 6 0.8283 -4.8270 3.6437 20 6 -0.2985 -5.4036 4.1996 21 6 -0.4021 -5.5353 5.5718 22 6 0.6223 -5.0930 6.3879 23 6 1.7507 -4.5200 5.8318 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 4.0200 -0.5873 0.7125 32 1 3.1809 -2.0706 0.1986 33 1 3.6742 -1.2788 3.1034 34 1 4.6753 -2.4296 2.1858 35 1 2.6580 -3.7400 1.8393 36 1 2.4860 -6.5073 1.3429 37 1 0.9077 -4.7208 2.5719 38 1 -1.0989 -5.7487 3.5620 39 1 -1.2835 -5.9833 6.0061 40 1 0.5411 -5.1956 7.4599 41 1 2.5512 -4.1749 6.4694 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160190331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:38 Heat of formation + Delta-G solvation = -27.428461 kcal Electronic energy + Delta-G solvation = -20208.238479 eV Core-core repulsion = 17280.801463 eV Total energy + Delta-G solvation = -2927.437015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.25405 -37.88573 -35.40447 -32.95816 -31.63688 -30.33659 -29.61459 -27.63507 -27.03724 -25.65804 -22.65567 -21.58177 -21.01273 -20.69959 -19.74923 -16.62497 -16.47164 -15.78842 -15.08363 -14.91967 -14.61843 -13.94104 -13.86504 -13.51110 -13.07222 -12.89828 -12.57206 -12.31068 -12.14878 -12.07500 -11.94084 -11.64729 -11.54380 -11.27405 -11.02668 -10.92400 -10.72362 -10.59119 -10.43688 -10.15429 -9.88533 -9.58643 -9.47335 -9.08472 -8.68866 -7.72883 -7.35307 -6.91779 -6.03427 -4.29861 2.59323 2.70777 3.22035 3.27805 3.31302 4.14325 4.29725 5.02331 5.08111 5.15325 5.21631 5.38318 5.48940 5.67113 5.74615 5.84160 5.88947 5.92543 5.95352 6.01482 6.02961 6.09955 6.28564 6.34511 6.41630 6.51639 6.58737 6.69730 6.81247 6.92331 6.98616 7.23194 7.37575 7.60639 7.66509 7.78084 7.86522 8.03171 8.13123 8.32683 8.48583 8.88284 9.19887 9.45232 10.80895 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.006684 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.656258 B = 4188.006733 C = 5315.919587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 C -0.173 4.173 4 O -0.360 6.360 5 C 0.070 3.930 6 C 0.069 3.931 7 N -0.680 5.680 8 C 0.237 3.763 9 H 0.034 0.966 10 C -0.542 4.542 11 H 0.056 0.944 12 C 0.074 3.926 13 N -0.877 5.877 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.278 1.278 18 C -0.017 4.017 19 C -0.055 4.055 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.135 4.135 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.366 0.634 36 H 0.268 0.732 37 H 0.146 0.854 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 7.627 -3.092 8.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 C -0.231 4.231 4 O -0.279 6.279 5 C -0.007 4.007 6 C -0.062 4.062 7 N -0.318 5.318 8 C 0.128 3.872 9 H 0.052 0.948 10 C -0.581 4.581 11 H 0.074 0.926 12 C -0.129 4.129 13 N -0.515 5.515 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.204 1.204 18 C -0.018 4.018 19 C -0.074 4.074 20 C -0.166 4.166 21 C -0.172 4.172 22 C -0.162 4.162 23 C -0.154 4.154 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.192 0.808 36 H 0.078 0.922 37 H 0.164 0.836 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.272 7.928 -2.792 9.020 hybrid contribution 1.619 -1.574 -0.577 2.331 sum -1.653 6.354 -3.369 7.379 Atomic orbital electron populations 1.21816 0.94077 1.02854 1.01662 1.21996 0.94945 0.92000 0.89223 1.22303 1.01269 0.97507 1.01979 1.88102 1.36889 1.69343 1.33606 1.22615 0.84866 0.94291 0.98945 1.21708 0.94906 0.94887 0.94655 1.60886 1.46769 1.15396 1.08721 1.18085 0.89055 0.91286 0.88733 0.94784 1.21694 1.00896 1.10883 1.24622 0.92551 1.24976 0.95145 0.97588 0.95233 1.69502 1.23307 1.33851 1.24876 0.86647 0.81045 0.82286 0.78026 1.20178 1.21096 1.20352 1.20176 0.94767 0.95064 0.91784 1.21405 0.90592 0.93575 1.01781 1.21098 0.98825 1.02302 0.94400 1.20753 0.98619 1.03619 0.94201 1.20737 0.95243 1.02173 0.98088 1.20848 0.97247 1.01989 0.95297 0.91999 0.92128 0.91723 0.92930 0.92816 0.92329 0.91972 0.94543 0.93887 0.92411 0.94460 0.80803 0.92182 0.83631 0.88181 0.88394 0.88191 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.56 37.16 0.36 -1.51 16 2 C 0.08 1.07 3.34 -26.73 -0.09 0.98 16 3 C -0.17 -2.02 9.53 37.16 0.35 -1.67 16 4 O -0.36 -6.46 9.94 -35.23 -0.35 -6.81 16 5 C 0.07 1.21 6.03 37.16 0.22 1.44 16 6 C 0.07 1.39 5.86 -3.83 -0.02 1.37 16 7 N -0.68 -15.75 5.36 -109.19 -0.59 -16.34 16 8 C 0.24 5.81 2.51 -70.02 -0.18 5.63 16 9 H 0.03 0.82 7.74 -51.93 -0.40 0.42 16 10 C -0.54 -14.09 8.62 -34.44 -0.30 -14.39 16 11 H 0.06 1.48 7.82 -52.49 -0.41 1.06 16 12 C 0.07 1.89 5.09 -17.82 -0.09 1.80 16 13 N -0.88 -22.38 7.93 55.43 0.44 -21.94 16 14 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 C -0.02 -0.41 4.77 -104.62 -0.50 -0.91 16 19 C -0.05 -1.31 7.76 -39.58 -0.31 -1.62 16 20 C -0.15 -3.17 10.05 -39.58 -0.40 -3.56 16 21 C -0.15 -3.06 10.05 -39.58 -0.40 -3.46 16 22 C -0.14 -2.91 10.05 -39.59 -0.40 -3.31 16 23 C -0.14 -3.01 9.70 -39.58 -0.38 -3.39 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 28 H 0.05 0.62 7.87 -51.93 -0.41 0.21 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 35 H 0.37 9.00 5.48 -39.29 -0.22 8.79 16 36 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.15 3.66 5.55 -52.49 -0.29 3.37 16 38 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -26.77 332.51 -9.37 -36.13 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.73 Total: 11.10 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.12 Total: -22.59 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.15 Total: -38.28 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.35 Total: -6.81 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.77 -9.37 -36.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160190331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.706 kcal (2) G-P(sol) polarization free energy of solvation -26.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds