Wall clock time and date at job start Mon Mar 30 2020 07:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46861 * 2 1 4 4 O 1.42896 * 109.47077 * 119.99857 * 2 1 3 5 5 C 1.42904 * 113.99938 * 150.00215 * 4 2 1 6 6 C 1.52995 * 109.47390 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47093 * 65.00101 * 6 5 4 8 8 C 1.46896 * 111.00035 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47694 * 34.99734 * 8 7 6 10 10 C 1.50705 * 109.47011 * 274.99710 * 8 7 6 11 11 H 1.07991 * 119.99868 * 122.44001 * 10 8 7 12 12 C 1.37876 * 119.99877 * 302.16480 * 10 8 7 13 13 N 1.31512 * 119.99992 * 6.24478 * 12 10 8 14 14 Si 1.86798 * 120.00170 * 186.24568 * 12 10 8 15 15 H 1.48502 * 109.46873 * 59.99586 * 14 12 10 16 16 H 1.48491 * 109.47410 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47024 * 300.00265 * 14 12 10 18 18 C 1.50701 * 109.47193 * 154.99634 * 8 7 6 19 19 C 1.38235 * 119.99949 * 30.25353 * 18 8 7 20 20 C 1.38244 * 120.00015 * 179.80953 * 19 18 8 21 21 C 1.38239 * 119.99593 * 0.39159 * 20 19 18 22 22 C 1.38230 * 120.00056 * 359.85959 * 21 20 19 23 23 C 1.38234 * 120.00279 * 359.95322 * 22 21 20 24 24 H 1.08996 * 109.47411 * 300.00030 * 1 2 3 25 25 H 1.09002 * 109.46803 * 60.00303 * 1 2 3 26 26 H 1.09005 * 109.46797 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47507 * 240.00338 * 2 1 3 28 28 H 1.09002 * 109.46885 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47599 * 299.99907 * 3 2 1 30 30 H 1.09000 * 109.46693 * 60.00404 * 3 2 1 31 31 H 1.08996 * 109.47150 * 59.99898 * 5 4 2 32 32 H 1.09004 * 109.46889 * 300.00122 * 5 4 2 33 33 H 1.09001 * 109.47305 * 305.00329 * 6 5 4 34 34 H 1.08997 * 109.47402 * 184.99953 * 6 5 4 35 35 H 1.00897 * 111.00243 * 56.04268 * 7 6 5 36 36 H 0.97000 * 120.00027 * 180.02562 * 13 12 10 37 37 H 1.07996 * 119.99812 * 359.97438 * 19 18 8 38 38 H 1.07992 * 119.99608 * 180.22802 * 20 19 18 39 39 H 1.07998 * 119.99106 * 179.83497 * 21 20 19 40 40 H 1.07999 * 119.99677 * 179.97438 * 22 21 20 41 41 H 1.08006 * 120.00172 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9886 6 6 3.6755 -2.0091 2.2941 7 7 2.7231 -3.0839 2.6031 8 6 3.0851 -3.7649 3.8533 9 1 3.5073 -3.0423 4.5516 10 6 4.1030 -4.8380 3.5643 11 1 5.0608 -4.8220 4.0628 12 6 3.8091 -5.8433 2.6676 13 7 2.6930 -5.7998 1.9735 14 14 4.9963 -7.2672 2.4388 15 1 5.1712 -7.9784 3.7306 16 1 4.4524 -8.2075 1.4263 17 1 6.3091 -6.7480 1.9781 18 6 1.8549 -4.3895 4.4595 19 6 0.8283 -4.8270 3.6437 20 6 -0.2985 -5.4036 4.1996 21 6 -0.4021 -5.5353 5.5718 22 6 0.6223 -5.0930 6.3879 23 6 1.7507 -4.5200 5.8318 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 4.0200 -0.5873 0.7125 32 1 3.1809 -2.0706 0.1986 33 1 3.6742 -1.2788 3.1034 34 1 4.6753 -2.4296 2.1858 35 1 2.6580 -3.7400 1.8393 36 1 2.4860 -6.5073 1.3429 37 1 0.9077 -4.7208 2.5719 38 1 -1.0989 -5.7487 3.5620 39 1 -1.2835 -5.9833 6.0061 40 1 0.5411 -5.1956 7.4599 41 1 2.5512 -4.1749 6.4694 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160190331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:37 Heat of formation + Delta-G solvation = -41.333310 kcal Electronic energy + Delta-G solvation = -20208.841438 eV Core-core repulsion = 17280.801463 eV Total energy + Delta-G solvation = -2928.039975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91681 -39.22153 -37.12224 -34.46720 -33.22702 -31.96979 -31.28880 -29.26089 -28.06993 -27.44227 -24.43464 -23.23075 -22.32372 -22.10268 -21.51535 -18.49735 -17.85359 -17.38823 -16.82835 -16.38892 -15.96724 -15.58144 -15.43102 -15.16335 -14.58661 -14.34938 -14.03815 -13.84795 -13.70112 -13.42082 -13.24761 -13.11058 -12.99996 -12.83126 -12.68866 -12.54689 -12.30074 -12.15751 -11.89313 -11.71107 -11.43549 -11.37742 -11.23162 -10.64108 -10.33764 -9.42047 -9.09222 -8.76111 -7.94673 -6.30111 0.88984 1.03304 1.37997 1.41321 1.46689 2.38860 2.90778 3.08923 3.39862 3.87999 4.04958 4.19723 4.33564 4.37343 4.38160 4.40177 4.45982 4.56797 4.66202 4.77302 4.80311 4.87133 4.94205 4.95769 4.99537 5.06858 5.09386 5.23866 5.24248 5.34521 5.40482 5.52972 5.65378 5.70841 5.92687 6.09209 6.10652 6.37827 6.51926 6.55101 6.62952 7.01004 7.27019 7.48496 8.84356 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.006684 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.656258 B = 4188.006733 C = 5315.919587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.166 4.166 4 O -0.389 6.389 5 C 0.080 3.920 6 C 0.067 3.933 7 N -0.682 5.682 8 C 0.237 3.763 9 H 0.023 0.977 10 C -0.563 4.563 11 H 0.044 0.956 12 C 0.042 3.958 13 N -0.882 5.882 14 Si 0.944 3.056 15 H -0.282 1.282 16 H -0.280 1.280 17 H -0.275 1.275 18 C -0.044 4.044 19 C -0.076 4.076 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.152 4.152 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.028 0.972 35 H 0.357 0.643 36 H 0.267 0.733 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 7.655 -3.092 8.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 C -0.224 4.224 4 O -0.309 6.309 5 C 0.003 3.997 6 C -0.063 4.063 7 N -0.319 5.319 8 C 0.128 3.872 9 H 0.041 0.959 10 C -0.602 4.602 11 H 0.062 0.938 12 C -0.161 4.161 13 N -0.519 5.519 14 Si 0.770 3.230 15 H -0.208 1.208 16 H -0.206 1.206 17 H -0.200 1.200 18 C -0.046 4.046 19 C -0.094 4.094 20 C -0.173 4.173 21 C -0.167 4.167 22 C -0.158 4.158 23 C -0.171 4.171 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.181 0.819 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.166 7.975 -2.796 9.422 hybrid contribution 1.832 -1.545 -0.551 2.459 sum -2.334 6.430 -3.347 7.615 Atomic orbital electron populations 1.21832 0.93300 1.02112 1.02905 1.22306 0.95668 0.93128 0.88091 1.22241 1.01306 0.95839 1.02982 1.88053 1.37020 1.69899 1.35917 1.22445 0.85783 0.94686 0.96796 1.21760 0.94048 0.94205 0.96295 1.60898 1.47667 1.15394 1.07922 1.18043 0.89344 0.90807 0.89049 0.95912 1.21802 1.00967 1.12082 1.25330 0.93786 1.25481 0.96448 0.99121 0.95040 1.69631 1.23793 1.33911 1.24587 0.85846 0.79646 0.79940 0.77522 1.20832 1.20551 1.20006 1.20279 0.94978 0.96361 0.92941 1.21295 0.91921 0.95326 1.00900 1.21379 0.98468 1.01696 0.95781 1.21181 0.99667 1.02360 0.93464 1.21147 0.94132 1.00480 1.00065 1.21084 0.98607 1.02683 0.94730 0.92567 0.89039 0.93448 0.92304 0.92718 0.89756 0.92507 0.91748 0.94564 0.92592 0.95374 0.81879 0.92273 0.85685 0.86149 0.84574 0.84650 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.56 71.98 0.69 -2.83 16 2 C 0.07 1.76 3.34 30.60 0.10 1.87 16 3 C -0.17 -3.56 9.53 71.98 0.69 -2.87 16 4 O -0.39 -13.98 9.94 -148.98 -1.48 -15.46 16 5 C 0.08 2.79 6.03 71.98 0.43 3.22 16 6 C 0.07 2.79 5.86 86.30 0.51 3.29 16 7 N -0.68 -32.79 5.36 -499.36 -2.68 -35.46 16 8 C 0.24 12.01 2.51 43.43 0.11 12.12 16 9 H 0.02 1.15 7.74 -2.39 -0.02 1.14 16 10 C -0.56 -30.12 8.62 25.60 0.22 -29.90 16 11 H 0.04 2.38 7.82 -2.92 -0.02 2.36 16 12 C 0.04 2.16 5.09 84.65 0.43 2.59 16 13 N -0.88 -45.74 7.93 21.45 0.17 -45.57 16 14 Si 0.94 42.27 29.54 68.60 2.03 44.30 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 C -0.04 -2.19 4.77 -19.87 -0.09 -2.29 16 19 C -0.08 -3.65 7.76 22.27 0.17 -3.48 16 20 C -0.16 -6.43 10.05 22.27 0.22 -6.21 16 21 C -0.15 -5.49 10.05 22.27 0.22 -5.27 16 22 C -0.14 -5.31 10.05 22.27 0.22 -5.09 16 23 C -0.15 -6.72 9.70 22.27 0.22 -6.51 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.06 1.50 7.79 -2.39 -0.02 1.48 16 28 H 0.05 1.15 7.87 -2.39 -0.02 1.13 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.87 7.87 -2.39 -0.02 1.85 16 32 H 0.04 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 34 H 0.03 1.21 8.00 -2.39 -0.02 1.19 16 35 H 0.36 18.21 5.48 -89.70 -0.49 17.72 16 36 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 37 H 0.13 6.48 5.55 -2.91 -0.02 6.46 16 38 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 39 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 40 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 41 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -57.99 332.51 2.68 -55.32 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.50 Total: 38.23 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 4.14 Total: -41.35 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.51 Total: -81.03 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.48 Total: -15.46 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -57.99 2.68 -55.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160190331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.984 kcal (2) G-P(sol) polarization free energy of solvation -57.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds