Wall clock time and date at job start Mon Mar 30 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00475 * 2 1 4 4 C 1.52992 * 109.46913 * 59.99807 * 3 2 1 5 5 C 1.53004 * 109.47163 * 299.99865 * 3 2 1 6 6 C 1.52997 * 109.47283 * 180.02562 * 3 2 1 7 7 N 1.46894 * 109.47469 * 64.99472 * 6 3 2 8 8 C 1.46902 * 111.00385 * 179.97438 * 7 6 3 9 9 H 1.09007 * 109.46787 * 325.00690 * 8 7 6 10 10 C 1.50701 * 109.47149 * 85.00130 * 8 7 6 11 11 H 1.07992 * 120.00358 * 234.80338 * 10 8 7 12 12 C 1.37880 * 119.99710 * 54.79741 * 10 8 7 13 13 N 1.31520 * 120.00156 * 2.52728 * 12 10 8 14 14 Si 1.86802 * 120.00014 * 182.52395 * 12 10 8 15 15 H 1.48497 * 109.47159 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47179 * 120.00359 * 14 12 10 17 17 H 1.48503 * 109.46817 * 240.00337 * 14 12 10 18 18 C 1.50691 * 109.47446 * 205.00406 * 8 7 6 19 19 C 1.38237 * 119.99956 * 330.50135 * 18 8 7 20 20 C 1.38241 * 119.99823 * 180.02562 * 19 18 8 21 21 C 1.38236 * 120.00284 * 359.95652 * 20 19 18 22 22 C 1.38241 * 119.99698 * 359.97438 * 21 20 19 23 23 C 1.38228 * 119.99954 * 0.07391 * 22 21 20 24 24 H 1.08998 * 109.47023 * 300.00568 * 1 2 3 25 25 H 1.09002 * 109.46587 * 59.99743 * 1 2 3 26 26 H 1.08996 * 109.47722 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47222 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47728 * 299.99741 * 4 3 2 29 29 H 1.09000 * 109.47423 * 60.00237 * 4 3 2 30 30 H 1.09003 * 109.46670 * 300.00149 * 5 3 2 31 31 H 1.09001 * 109.46887 * 59.99749 * 5 3 2 32 32 H 1.08992 * 109.47307 * 179.97438 * 5 3 2 33 33 H 1.09008 * 109.46953 * 305.00032 * 6 3 2 34 34 H 1.08996 * 109.47190 * 185.00099 * 6 3 2 35 35 H 1.00896 * 111.00134 * 303.95608 * 7 6 3 36 36 H 0.96999 * 119.99883 * 179.97438 * 13 12 10 37 37 H 1.07994 * 120.00082 * 359.97438 * 19 18 8 38 38 H 1.08002 * 119.99384 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.00061 * 179.72647 * 21 20 19 40 40 H 1.08002 * 119.99533 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.99834 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5589 2.0647 1.2492 5 6 1.5590 2.0647 -1.2493 6 6 3.5355 1.1845 -0.0006 7 7 3.9770 0.5625 -1.2560 8 6 5.4396 0.4305 -1.2924 9 1 5.8940 1.2832 -0.7878 10 6 5.8467 -0.8415 -0.5944 11 1 6.5610 -0.8086 0.2148 12 6 5.3070 -2.0474 -0.9890 13 7 4.4750 -2.0941 -2.0065 14 14 5.7576 -3.6150 -0.0783 15 1 6.7052 -3.2948 1.0193 16 1 4.5299 -4.2277 0.4898 17 1 6.3963 -4.5686 -1.0206 18 6 5.9047 0.3883 -2.7252 19 6 5.0784 -0.1292 -3.7051 20 6 5.5053 -0.1684 -5.0194 21 6 6.7581 0.3107 -5.3538 22 6 7.5839 0.8295 -4.3740 23 6 7.1574 0.8678 -3.0597 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.0020 3.0606 1.2490 28 1 0.4723 2.1509 1.2492 29 1 1.8805 1.5238 2.1392 30 1 1.8806 1.5237 -2.1392 31 1 0.4724 2.1508 -1.2493 32 1 2.0020 3.0606 -1.2491 33 1 3.8515 0.5680 0.8410 34 1 3.9786 2.1763 0.0889 35 1 3.5294 -0.3312 -1.3937 36 1 4.0957 -2.9425 -2.2843 37 1 4.0997 -0.5036 -3.4439 38 1 4.8598 -0.5731 -5.7849 39 1 7.0933 0.2760 -6.3798 40 1 8.5628 1.2034 -4.6352 41 1 7.8027 1.2727 -2.2942 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160231535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:11 Heat of formation + Delta-G solvation = -34.744804 kcal Electronic energy + Delta-G solvation = -20828.670517 eV Core-core repulsion = 17900.916241 eV Total energy + Delta-G solvation = -2927.754276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14249 -39.59042 -36.94966 -34.48265 -32.99459 -31.48561 -31.08330 -28.54787 -28.20494 -27.62686 -25.54744 -23.95407 -22.77884 -21.47313 -20.71997 -18.43612 -17.61943 -17.08836 -16.87491 -16.32751 -16.08589 -15.56491 -15.46620 -15.23427 -14.66036 -14.28182 -14.01499 -13.78825 -13.60304 -13.35277 -13.29237 -13.16053 -12.84725 -12.76907 -12.72302 -12.53927 -12.31237 -12.11193 -11.99041 -11.73402 -11.50256 -11.26559 -11.05728 -10.59422 -10.33531 -9.39746 -9.07874 -8.75398 -7.91506 -6.27359 0.91484 1.05951 1.35316 1.39139 1.46858 2.39727 3.02993 3.12131 3.42304 3.80171 4.04115 4.20432 4.37294 4.41929 4.45191 4.52807 4.58950 4.62007 4.73193 4.78824 4.80217 4.83321 4.90855 4.97292 5.00357 5.08482 5.23770 5.23890 5.27122 5.28525 5.55825 5.60248 5.66994 5.73941 5.95379 6.12068 6.13477 6.40194 6.52333 6.56913 6.64576 7.02554 7.30995 7.49037 8.86940 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.008137 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.169113 B = 3440.283944 C = 4452.147149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.111 3.889 4 C -0.168 4.168 5 C -0.154 4.154 6 C 0.080 3.920 7 N -0.679 5.679 8 C 0.236 3.764 9 H 0.025 0.975 10 C -0.561 4.561 11 H 0.040 0.960 12 C 0.042 3.958 13 N -0.877 5.877 14 Si 0.940 3.060 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.282 1.282 18 C -0.043 4.043 19 C -0.069 4.069 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.152 4.152 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.002 0.998 34 H 0.072 0.928 35 H 0.362 0.638 36 H 0.264 0.736 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 6.796 -0.133 8.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C 0.072 3.928 4 C -0.226 4.226 5 C -0.211 4.211 6 C -0.051 4.051 7 N -0.315 5.315 8 C 0.127 3.873 9 H 0.043 0.957 10 C -0.600 4.600 11 H 0.058 0.942 12 C -0.161 4.161 13 N -0.515 5.515 14 Si 0.767 3.233 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.208 1.208 18 C -0.044 4.044 19 C -0.088 4.088 20 C -0.174 4.174 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.170 4.170 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.020 0.980 34 H 0.090 0.910 35 H 0.186 0.814 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.667 7.079 -0.582 9.086 hybrid contribution 0.412 -1.779 1.286 2.233 sum -5.255 5.300 0.704 7.496 Atomic orbital electron populations 1.22877 0.80785 1.02831 1.00820 1.88040 1.20754 1.28724 1.95175 1.21648 0.92584 0.83034 0.95579 1.22321 1.02479 1.00967 0.96810 1.22125 1.00717 1.00446 0.97852 1.21764 0.92657 0.98382 0.92283 1.60977 1.07266 1.31942 1.31306 1.18040 0.86958 0.93081 0.89251 0.95673 1.21839 1.26714 0.93817 1.17617 0.94166 1.25447 0.94919 1.00737 0.94978 1.69733 1.30382 1.26235 1.25125 0.85791 0.77884 0.80789 0.78811 1.20214 1.20656 1.20827 1.20257 0.93588 0.94293 0.96239 1.21210 1.00989 0.95042 0.91552 1.21360 0.97410 1.02111 0.96525 1.21164 0.94592 1.01297 0.99637 1.21129 1.00189 1.01899 0.92653 1.21060 0.96311 1.02876 0.96780 0.92552 0.93182 0.89962 0.90205 0.90530 0.92815 0.92952 0.91598 0.91274 0.98001 0.90962 0.81351 0.92626 0.85913 0.86272 0.84722 0.84765 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 10.21 113.37 1.16 1.78 16 2 O -0.41 -15.41 9.87 -148.98 -1.47 -16.88 16 3 C 0.11 3.74 0.90 -10.80 -0.01 3.73 16 4 C -0.17 -4.36 8.25 71.98 0.59 -3.77 16 5 C -0.15 -4.71 8.04 71.98 0.58 -4.13 16 6 C 0.08 3.27 4.68 86.30 0.40 3.68 16 7 N -0.68 -31.97 4.41 -499.37 -2.20 -34.17 16 8 C 0.24 11.87 2.50 43.42 0.11 11.98 16 9 H 0.03 1.25 7.75 -2.38 -0.02 1.23 16 10 C -0.56 -30.72 8.63 25.60 0.22 -30.50 16 11 H 0.04 2.25 7.81 -2.91 -0.02 2.23 16 12 C 0.04 2.24 5.06 84.65 0.43 2.67 16 13 N -0.88 -47.01 7.97 21.45 0.17 -46.84 16 14 Si 0.94 44.01 29.54 68.60 2.03 46.04 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 C -0.04 -2.07 4.79 -19.87 -0.10 -2.17 16 19 C -0.07 -3.29 7.66 22.27 0.17 -3.12 16 20 C -0.16 -6.38 10.05 22.27 0.22 -6.16 16 21 C -0.15 -5.43 10.05 22.27 0.22 -5.21 16 22 C -0.14 -5.25 10.05 22.27 0.22 -5.02 16 23 C -0.15 -6.58 9.70 22.27 0.22 -6.36 16 24 H 0.06 1.27 6.42 -2.39 -0.02 1.25 16 25 H 0.05 1.24 6.42 -2.39 -0.02 1.22 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.08 1.64 6.54 -2.39 -0.02 1.63 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.91 7.47 -2.39 -0.02 1.89 16 31 H 0.07 1.66 6.54 -2.39 -0.02 1.65 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.00 0.08 8.00 -2.38 -0.02 0.06 16 34 H 0.07 2.73 8.05 -2.39 -0.02 2.71 16 35 H 0.36 18.74 5.09 -89.70 -0.46 18.29 16 36 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 37 H 0.12 6.32 5.59 -2.91 -0.02 6.30 16 38 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 41 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -59.71 322.47 3.52 -56.19 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: 0.55 Total: 38.25 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 4.44 Total: -42.60 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -2.03 Total: -81.00 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -1.47 Total: -16.88 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -59.71 3.52 -56.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160231535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.450 kcal (2) G-P(sol) polarization free energy of solvation -59.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds