Wall clock time and date at job start Mon Mar 30 2020 07:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47435 * 2 1 4 4 N 1.46503 * 109.47121 * 188.24484 * 3 2 1 5 5 C 1.36936 * 119.99884 * 278.54352 * 4 3 2 6 6 H 1.07996 * 119.99963 * 14.26722 * 5 4 3 7 7 C 1.38816 * 119.99678 * 194.26933 * 5 4 3 8 8 N 1.31617 * 119.99941 * 32.35287 * 7 5 4 9 9 Si 1.86799 * 119.99850 * 212.35231 * 7 5 4 10 10 H 1.48502 * 109.47355 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47186 * 120.00004 * 9 7 5 12 12 H 1.48504 * 109.47042 * 240.00101 * 9 7 5 13 13 C 1.46501 * 119.99653 * 98.54099 * 4 3 2 14 14 C 1.50699 * 109.46934 * 259.61087 * 13 4 3 15 15 C 1.38172 * 120.02953 * 264.06744 * 14 13 4 16 16 C 1.38244 * 120.05780 * 179.79654 * 15 14 13 17 17 C 1.50698 * 119.94620 * 180.25439 * 16 15 14 18 18 C 1.38290 * 120.10924 * 0.45757 * 16 15 14 19 19 C 1.38127 * 120.05488 * 359.79826 * 18 16 15 20 20 C 1.50700 * 120.02318 * 179.97438 * 19 18 16 21 21 C 1.38702 * 120.02912 * 84.34762 * 14 13 4 22 22 O 1.35898 * 120.05672 * 359.95181 * 21 14 13 23 23 H 1.09009 * 109.46968 * 59.99843 * 1 2 3 24 24 H 1.08999 * 109.47450 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47033 * 300.00411 * 1 2 3 26 26 H 1.09007 * 109.47043 * 240.00028 * 2 1 3 27 27 H 1.09002 * 109.46729 * 120.00790 * 2 1 3 28 28 H 1.08996 * 109.46782 * 68.24735 * 3 2 1 29 29 H 1.08997 * 109.46653 * 308.24686 * 3 2 1 30 30 H 0.97001 * 119.99674 * 183.60067 * 8 7 5 31 31 H 1.09004 * 109.46680 * 139.61375 * 13 4 3 32 32 H 1.08992 * 109.47231 * 19.61073 * 13 4 3 33 33 H 1.08000 * 119.97103 * 0.02562 * 15 14 13 34 34 H 1.09002 * 109.47156 * 270.21046 * 17 16 15 35 35 H 1.09007 * 109.46984 * 30.20443 * 17 16 15 36 36 H 1.09003 * 109.47131 * 150.20541 * 17 16 15 37 37 H 1.07994 * 119.96804 * 179.76888 * 18 16 15 38 38 H 1.08997 * 109.46970 * 270.01576 * 20 19 18 39 39 H 1.08996 * 109.47353 * 30.01734 * 20 19 18 40 40 H 1.09000 * 109.46838 * 150.01888 * 20 19 18 41 41 H 0.96702 * 114.00417 * 94.95125 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4916 1.4471 -0.1981 5 6 4.3280 1.2173 0.8616 6 1 3.9350 0.8094 1.7811 7 6 5.6809 1.5086 0.7538 8 7 6.0798 2.5146 0.0046 9 14 6.9353 0.4728 1.6720 10 1 6.2349 -0.5887 2.4386 11 1 7.8683 -0.1516 0.7000 12 1 7.7000 1.3359 2.6078 13 6 4.0483 1.6977 -1.5298 14 6 4.4435 0.3887 -2.1634 15 6 5.7504 -0.0523 -2.0819 16 6 6.1126 -1.2550 -2.6593 17 6 7.5375 -1.7364 -2.5639 18 6 5.1705 -2.0151 -3.3279 19 6 3.8639 -1.5761 -3.4168 20 6 2.8380 -2.4048 -4.1461 21 6 3.4968 -0.3716 -2.8340 22 8 2.2118 0.0622 -2.9197 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5140 0.8899 28 1 1.8021 1.9119 0.9545 29 1 1.5614 1.9970 -0.8071 30 1 7.0273 2.6861 -0.1126 31 1 4.9258 2.3385 -1.4421 32 1 3.2993 2.1900 -2.1500 33 1 6.4888 0.5413 -1.5634 34 1 8.1055 -1.3613 -3.4152 35 1 7.9837 -1.3696 -1.6394 36 1 7.5538 -2.8263 -2.5679 37 1 5.4568 -2.9525 -3.7814 38 1 2.8154 -2.1133 -5.1962 39 1 3.1004 -3.4597 -4.0674 40 1 1.8561 -2.2404 -3.7023 41 1 2.0135 0.5465 -3.7329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164203168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:58 Heat of formation + Delta-G solvation = -28.110340 kcal Electronic energy + Delta-G solvation = -21203.020420 eV Core-core repulsion = 18275.553836 eV Total energy + Delta-G solvation = -2927.466584 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89932 -37.89205 -37.61559 -34.78279 -33.71712 -33.10182 -31.89088 -28.38204 -27.43718 -27.16438 -26.78525 -23.88271 -21.87229 -21.58922 -21.33995 -18.95850 -18.70060 -17.17139 -16.63280 -16.44151 -15.67418 -15.58701 -15.39701 -14.86733 -14.71338 -14.34073 -14.14995 -13.89104 -13.74067 -13.48865 -13.28462 -13.13722 -12.98887 -12.77242 -12.60966 -12.46353 -12.34805 -12.09981 -12.00842 -11.86316 -11.78395 -11.66286 -11.23829 -11.03110 -10.49478 -9.33065 -9.04660 -8.78481 -7.72792 -5.19062 0.50680 0.63351 1.38027 1.44147 1.51621 2.52802 2.84038 3.21406 3.53130 3.88338 4.01473 4.08900 4.19999 4.34286 4.48843 4.50761 4.56025 4.66987 4.75494 4.77209 4.85205 4.86834 4.89133 4.98500 5.01265 5.03503 5.09044 5.23540 5.28548 5.35431 5.46510 5.51345 5.60157 5.69798 5.74237 5.81250 5.88352 6.03741 6.20433 6.46489 7.08986 7.17512 7.94262 8.34591 9.13174 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.011385 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.257645 B = 2458.809703 C = 3887.959814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.133 4.133 3 C 0.156 3.844 4 N -0.589 5.589 5 C -0.247 4.247 6 H 0.055 0.945 7 C -0.029 4.029 8 N -0.897 5.897 9 Si 0.914 3.086 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.295 1.295 13 C 0.162 3.838 14 C -0.100 4.100 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.097 4.097 21 C 0.096 3.904 22 O -0.487 6.487 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.020 0.980 28 H 0.024 0.976 29 H 0.053 0.947 30 H 0.249 0.751 31 H 0.098 0.902 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 -8.139 -10.296 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.172 4.172 3 C 0.031 3.969 4 N -0.308 5.308 5 C -0.376 4.376 6 H 0.073 0.927 7 C -0.225 4.225 8 N -0.544 5.544 9 Si 0.744 3.256 10 H -0.209 1.209 11 H -0.208 1.208 12 H -0.223 1.223 13 C 0.037 3.963 14 C -0.103 4.103 15 C -0.135 4.135 16 C -0.115 4.115 17 C -0.163 4.163 18 C -0.142 4.142 19 C -0.126 4.126 20 C -0.154 4.154 21 C 0.051 3.949 22 O -0.298 6.298 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.163 0.837 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.202 -8.275 -9.693 13.765 hybrid contribution 1.069 -0.004 0.528 1.193 sum -4.132 -8.279 -9.165 13.024 Atomic orbital electron populations 1.21584 0.94453 1.01328 1.01562 1.21981 0.96127 0.98757 1.00360 1.20905 0.83034 0.94986 0.98004 1.44122 1.01071 1.81854 1.03759 1.19245 0.90338 1.33635 0.94418 0.92730 1.24779 0.98178 0.98284 1.01286 1.70033 1.14261 1.25981 1.44098 0.86023 0.80873 0.80146 0.78542 1.20882 1.20781 1.22298 1.20258 1.00078 0.92734 0.83270 1.21167 0.92693 0.99764 0.96653 1.20957 0.96345 0.96560 0.99660 1.20195 0.97494 0.94843 0.98981 1.20748 0.91723 1.02048 1.01768 1.20905 0.91853 1.00541 1.00906 1.20483 0.95879 0.95887 1.00347 1.20609 0.96589 0.98566 0.99611 1.18143 0.83836 0.93362 0.99561 1.84831 1.23663 1.75740 1.45588 0.92069 0.92744 0.93109 0.91549 0.96065 0.95756 0.92872 0.94041 0.88562 0.94368 0.88486 0.89971 0.93954 0.89703 0.83717 0.89955 0.90734 0.91544 0.75264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.90 71.98 0.71 -3.19 16 2 C -0.13 -5.18 6.06 30.59 0.19 -4.99 16 3 C 0.16 6.73 5.74 86.38 0.50 7.23 16 4 N -0.59 -29.85 2.57 -706.35 -1.82 -31.67 16 5 C -0.25 -13.89 9.45 84.03 0.79 -13.09 16 6 H 0.05 3.16 8.00 -2.91 -0.02 3.13 16 7 C -0.03 -1.62 3.60 84.86 0.31 -1.31 16 8 N -0.90 -51.03 10.15 21.65 0.22 -50.81 16 9 Si 0.91 45.60 29.52 68.60 2.03 47.62 16 10 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 11 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 C 0.16 7.80 5.12 85.63 0.44 8.24 16 14 C -0.10 -4.36 5.36 -19.77 -0.11 -4.46 16 15 C -0.12 -5.16 8.80 22.26 0.20 -4.96 16 16 C -0.12 -4.22 5.88 -19.85 -0.12 -4.33 16 17 C -0.11 -3.22 10.01 71.24 0.71 -2.51 16 18 C -0.12 -3.88 9.35 22.26 0.21 -3.67 16 19 C -0.13 -3.93 5.89 -19.77 -0.12 -4.05 16 20 C -0.10 -2.19 9.79 71.24 0.70 -1.50 16 21 C 0.10 3.49 5.82 22.50 0.13 3.62 16 22 O -0.49 -15.16 9.65 -92.41 -0.89 -16.05 16 23 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 2.74 5.04 -2.38 -0.01 2.73 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 28 H 0.02 1.07 8.11 -2.39 -0.02 1.05 16 29 H 0.05 2.11 7.71 -2.39 -0.02 2.09 16 30 H 0.25 13.76 8.32 -92.71 -0.77 12.99 16 31 H 0.10 5.31 4.77 -2.38 -0.01 5.30 16 32 H 0.04 1.68 7.28 -2.39 -0.02 1.67 16 33 H 0.10 4.86 6.43 -2.91 -0.02 4.84 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.44 8.09 -2.38 -0.02 1.42 16 36 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 37 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 40 H 0.07 1.55 7.53 -2.39 -0.02 1.53 16 41 H 0.39 8.53 9.06 -74.06 -0.67 7.86 16 Total: -1.00 -64.17 327.41 4.42 -59.75 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.34 Total: 20.14 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 4.54 Total: -28.98 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.60 Total: -82.48 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.89 Total: -16.05 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -64.17 4.42 -59.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164203168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.640 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds