Wall clock time and date at job start Mon Mar 30 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 O 1.42907 * 109.47354 * 295.00528 * 3 2 1 6 6 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 7 7 N 1.46494 * 109.47022 * 300.00408 * 6 3 2 8 8 C 1.46503 * 119.99840 * 89.99713 * 7 6 3 9 9 C 1.53001 * 109.47000 * 89.99922 * 8 7 6 10 10 C 1.50706 * 109.47095 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00093 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99991 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99921 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99871 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47296 * 89.99998 * 14 12 10 16 16 H 1.48501 * 109.47192 * 210.00232 * 14 12 10 17 17 H 1.48505 * 109.47204 * 329.99790 * 14 12 10 18 18 C 1.39669 * 120.00281 * 269.99428 * 7 6 3 19 19 C 1.38911 * 120.07449 * 359.72639 * 18 7 6 20 20 C 1.38102 * 119.93008 * 179.76646 * 19 18 7 21 21 C 1.38288 * 120.07063 * 0.50838 * 20 19 18 22 22 C 1.38284 * 120.15161 * 359.74967 * 21 20 19 23 23 C 1.38115 * 120.07393 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96700 * 113.99797 * 179.97438 * 5 3 2 30 30 H 1.09007 * 109.46700 * 60.00493 * 6 3 2 31 31 H 1.08998 * 109.47381 * 179.97438 * 6 3 2 32 32 H 1.09002 * 109.47055 * 209.99249 * 8 7 6 33 33 H 1.08996 * 109.47186 * 329.99877 * 8 7 6 34 34 H 1.08998 * 109.47151 * 299.99653 * 9 8 7 35 35 H 1.09003 * 109.47477 * 60.00224 * 9 8 7 36 36 H 0.97002 * 119.99634 * 179.97438 * 13 12 10 37 37 H 1.08005 * 120.03459 * 0.02562 * 19 18 7 38 38 H 1.07994 * 119.96789 * 180.25355 * 20 19 18 39 39 H 1.07996 * 119.92716 * 179.71767 * 21 20 19 40 40 H 1.07995 * 119.96872 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.03566 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6619 2.0815 -1.2210 6 6 3.5649 1.4444 0.1258 7 7 3.9524 0.7894 1.3775 8 6 4.1970 -0.6548 1.4033 9 6 5.6721 -0.9277 1.1022 10 6 5.9238 -2.4133 1.1293 11 1 5.1130 -3.0947 1.3406 12 6 7.1894 -2.9027 0.8844 13 7 8.1767 -2.0730 0.6266 14 14 7.5016 -4.7440 0.9188 15 1 7.2907 -5.3073 -0.4390 16 1 8.8992 -5.0012 1.3498 17 1 6.5631 -5.3875 1.8729 18 6 4.0887 1.5417 2.5463 19 6 3.8628 2.9121 2.5224 20 6 3.9937 3.6524 3.6809 21 6 4.3597 3.0325 4.8617 22 6 4.5906 1.6693 4.8879 23 6 4.4558 0.9221 3.7342 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.9525 3.0012 -1.2900 30 1 3.9995 0.9054 -0.7162 31 1 3.9282 2.4720 0.1253 32 1 3.9487 -1.0478 2.3892 33 1 3.5765 -1.1419 0.6511 34 1 5.9204 -0.5347 0.1163 35 1 6.2926 -0.4406 1.8544 36 1 9.0671 -2.4172 0.4547 37 1 3.5809 3.3975 1.5997 38 1 3.8142 4.7171 3.6639 39 1 4.4658 3.6143 5.7653 40 1 4.8766 1.1883 5.8116 41 1 4.6367 -0.1423 3.7553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170716436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:31 Heat of formation + Delta-G solvation = -51.005098 kcal Electronic energy + Delta-G solvation = -20173.156964 eV Core-core repulsion = 17244.697589 eV Total energy + Delta-G solvation = -2928.459375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74013 -38.83909 -37.07883 -35.18736 -33.80747 -32.54984 -31.49992 -30.66335 -28.52793 -26.46510 -24.80685 -23.47793 -22.96776 -21.79319 -21.10441 -18.88147 -18.40336 -18.29632 -16.73758 -16.57826 -16.29737 -15.73252 -15.36505 -15.29232 -14.92442 -14.66890 -14.34989 -14.22817 -14.01929 -13.93346 -13.50017 -13.21694 -13.03292 -12.84557 -12.65293 -12.53913 -12.17648 -12.12159 -11.91883 -11.79246 -11.57089 -11.43877 -11.27932 -11.12436 -10.59167 -10.45831 -9.72531 -8.26083 -8.04647 -6.35219 0.63665 0.82641 1.38763 1.39928 1.50968 2.20183 2.41824 3.09628 3.10928 3.44142 3.74582 3.93617 4.06726 4.15189 4.17713 4.28103 4.41028 4.44477 4.54017 4.59721 4.67040 4.72058 4.78782 4.88584 4.91267 4.98465 5.02872 5.12867 5.21463 5.26518 5.39890 5.40964 5.48923 5.57711 5.70371 5.77632 5.83731 6.08912 6.16307 6.46412 6.72231 6.83146 6.89182 7.34814 8.89010 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.006376 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.127643 B = 4390.357461 C = 5771.767744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.104 3.896 4 H 0.062 0.938 5 O -0.572 6.572 6 C 0.094 3.906 7 N -0.620 5.620 8 C 0.139 3.861 9 C 0.023 3.977 10 C -0.542 4.542 11 H 0.065 0.935 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.261 1.261 18 C 0.206 3.794 19 C -0.212 4.212 20 C -0.075 4.075 21 C -0.191 4.191 22 C -0.082 4.082 23 C -0.220 4.220 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.393 0.607 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.075 0.925 34 H -0.015 1.015 35 H -0.015 1.015 36 H 0.263 0.737 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.953 10.724 3.149 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.044 3.956 4 H 0.080 0.920 5 O -0.379 6.379 6 C -0.030 4.030 7 N -0.330 5.330 8 C 0.017 3.983 9 C -0.015 4.015 10 C -0.580 4.580 11 H 0.083 0.917 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.185 1.185 18 C 0.104 3.896 19 C -0.234 4.234 20 C -0.093 4.093 21 C -0.211 4.211 22 C -0.100 4.100 23 C -0.242 4.242 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.081 10.041 2.804 16.727 hybrid contribution 1.186 -0.625 -0.083 1.343 sum -11.895 9.416 2.721 15.413 Atomic orbital electron populations 1.21639 0.94282 1.01825 1.01924 1.21693 0.97466 0.95105 1.02080 1.22105 0.92588 0.94230 0.86661 0.91974 1.86507 1.80555 1.31527 1.39308 1.22153 0.95740 0.98984 0.86108 1.46615 1.73271 1.06741 1.06326 1.21509 0.96408 0.79214 1.01190 1.19257 0.92716 0.95204 0.94323 1.21576 0.95152 0.93143 1.48154 0.91667 1.25967 0.95996 1.03039 0.94591 1.70123 1.01498 1.36692 1.48967 0.85453 0.77511 0.79291 0.78847 1.19723 1.20936 1.18455 1.18159 0.93533 0.91644 0.86303 1.20861 1.10904 0.91395 1.00270 1.21197 0.96110 1.00341 0.91682 1.21156 1.06267 0.94404 0.99297 1.21120 0.96940 0.94801 0.97170 1.20891 1.09857 1.00171 0.93322 0.92571 0.92317 0.92381 0.90880 0.92625 0.75721 0.92016 0.89340 0.91760 0.90702 0.99692 0.99678 0.92835 0.84875 0.83498 0.84293 0.85224 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.81 71.98 0.71 -2.51 16 2 C -0.13 -3.44 4.61 30.59 0.14 -3.30 16 3 C 0.10 2.61 3.29 30.59 0.10 2.71 16 4 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 5 O -0.57 -12.84 12.86 -148.98 -1.92 -14.76 16 6 C 0.09 2.75 5.06 86.38 0.44 3.19 16 7 N -0.62 -21.73 2.33 -697.30 -1.62 -23.35 16 8 C 0.14 5.73 3.97 86.38 0.34 6.07 16 9 C 0.02 1.24 5.30 29.85 0.16 1.39 16 10 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 11 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 12 C 0.00 0.12 5.46 84.66 0.46 0.58 16 13 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 14 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 18 C 0.21 7.03 6.55 38.21 0.25 7.28 16 19 C -0.21 -5.88 9.21 22.40 0.21 -5.68 16 20 C -0.07 -1.81 10.04 22.25 0.22 -1.58 16 21 C -0.19 -4.81 10.04 22.29 0.22 -4.59 16 22 C -0.08 -2.43 10.04 22.25 0.22 -2.20 16 23 C -0.22 -7.85 9.21 22.40 0.21 -7.64 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.33 7.82 -2.38 -0.02 1.32 16 27 H 0.07 2.17 5.55 -2.39 -0.01 2.15 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.39 5.25 9.08 -74.06 -0.67 4.58 16 30 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 31 H 0.09 2.22 6.19 -2.39 -0.01 2.20 16 32 H 0.06 2.62 6.20 -2.39 -0.01 2.61 16 33 H 0.07 2.94 6.02 -2.39 -0.01 2.92 16 34 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.13 3.07 6.14 -2.91 -0.02 3.05 16 38 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 40 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.10 4.11 6.14 -2.91 -0.02 4.09 16 Total: -1.00 -67.73 331.30 3.02 -64.71 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.34 Total: 20.94 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 3.91 Total: -36.62 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.34 Total: -80.51 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.92 Total: -14.76 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.73 3.02 -64.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170716436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.703 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds