Wall clock time and date at job start Mon Mar 30 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47514 * 2 1 4 4 H 1.09002 * 109.46635 * 304.87698 * 3 2 1 5 5 N 1.46906 * 109.47100 * 64.87495 * 3 2 1 6 6 C 1.46901 * 110.99861 * 202.41124 * 5 3 2 7 7 H 1.08997 * 109.47608 * 326.02560 * 6 5 3 8 8 C 1.53004 * 109.46903 * 86.02371 * 6 5 3 9 9 C 1.50695 * 109.47300 * 206.02165 * 6 5 3 10 10 H 1.08004 * 120.00001 * 0.02562 * 9 6 5 11 11 C 1.37879 * 120.00110 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00160 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 119.99614 * 179.97438 * 11 9 6 14 14 H 1.48494 * 109.47313 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46882 * 120.00382 * 13 11 9 16 16 H 1.48497 * 109.47151 * 239.99798 * 13 11 9 17 17 C 1.50701 * 109.47377 * 184.87952 * 3 2 1 18 18 C 1.38260 * 119.94200 * 279.72331 * 17 3 2 19 19 C 1.38150 * 120.05573 * 179.72491 * 18 17 3 20 20 C 1.38734 * 119.93809 * 0.54963 * 19 18 17 21 21 O 1.35906 * 120.05096 * 179.74640 * 20 19 18 22 22 C 1.42897 * 117.00225 * 359.97438 * 21 20 19 23 23 C 1.38726 * 119.89263 * 359.72499 * 20 19 18 24 24 C 1.38151 * 119.94496 * 0.02562 * 23 20 19 25 25 H 1.09006 * 109.47085 * 64.33534 * 1 2 3 26 26 H 1.09006 * 109.47169 * 184.33553 * 1 2 3 27 27 H 1.08998 * 109.47148 * 304.33478 * 1 2 3 28 28 H 1.09003 * 109.47644 * 239.99559 * 2 1 3 29 29 H 1.09006 * 109.47169 * 120.00119 * 2 1 3 30 30 H 1.00896 * 110.99644 * 78.46316 * 5 3 2 31 31 H 1.09000 * 109.47122 * 305.92618 * 8 6 5 32 32 H 1.09000 * 109.47147 * 65.92055 * 8 6 5 33 33 H 1.09000 * 109.47315 * 185.92423 * 8 6 5 34 34 H 0.96993 * 119.99754 * 179.97438 * 12 11 9 35 35 H 1.08005 * 119.97534 * 0.02562 * 18 17 3 36 36 H 1.07995 * 120.02974 * 180.27149 * 19 18 17 37 37 H 1.08999 * 109.47399 * 179.97438 * 22 21 20 38 38 H 1.09005 * 109.46763 * 300.00083 * 22 21 20 39 39 H 1.09000 * 109.47418 * 59.99395 * 22 21 20 40 40 H 1.07999 * 120.02794 * 179.97438 * 23 20 19 41 41 H 1.07990 * 119.97306 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6071 1.9808 -0.8431 5 7 1.6488 2.1002 1.2540 6 6 1.6301 3.5608 1.0987 7 1 2.4155 3.8627 0.4059 8 6 0.2703 3.9979 0.5500 9 6 1.8640 4.2114 2.4377 10 1 2.0123 3.6009 3.3162 11 6 1.8888 5.5861 2.5413 12 7 1.7077 6.3295 1.4717 13 14 2.1781 6.3924 4.2014 14 1 2.3515 5.3433 5.2378 15 1 3.4017 7.2316 4.1375 16 1 1.0118 7.2436 4.5482 17 6 3.5422 1.4441 -0.1209 18 6 4.3245 1.2091 0.9946 19 6 5.7017 1.2045 0.8854 20 6 6.2996 1.4472 -0.3427 21 8 7.6543 1.4483 -0.4517 22 6 8.4013 1.1926 0.7394 23 6 5.5125 1.6883 -1.4593 24 6 4.1357 1.6868 -1.3458 25 1 -0.3633 0.4451 -0.9263 26 1 -0.3634 -1.0248 0.0777 27 1 -0.3633 0.5796 0.8486 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.2560 1.8249 2.0113 31 1 0.0543 3.4478 -0.3659 32 1 -0.5034 3.7907 1.2892 33 1 0.2914 5.0664 0.3356 34 1 1.7248 7.2966 1.5448 35 1 3.8586 1.0242 1.9513 36 1 6.3123 1.0166 1.7561 37 1 9.4671 1.2218 0.5132 38 1 8.1668 1.9521 1.4853 39 1 8.1395 0.2086 1.1283 40 1 5.9757 1.8779 -2.4163 41 1 3.5225 1.8740 -2.2148 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170806570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:38 Heat of formation + Delta-G solvation = -22.608271 kcal Electronic energy + Delta-G solvation = -20227.956593 eV Core-core repulsion = 17300.728597 eV Total energy + Delta-G solvation = -2927.227996 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99643 -38.13687 -35.80404 -33.60899 -31.42610 -30.80354 -30.01479 -28.00729 -26.90769 -25.27228 -24.44957 -22.48894 -21.54085 -20.33565 -19.35944 -18.03436 -16.52221 -16.03395 -15.63610 -15.32530 -14.89487 -14.44373 -14.18422 -13.67853 -13.49838 -13.31441 -12.96430 -12.54676 -12.44489 -12.15120 -11.95997 -11.78929 -11.34131 -11.18441 -10.99873 -10.83131 -10.65778 -10.61897 -10.53907 -10.22811 -10.15268 -10.09659 -9.79421 -8.77167 -8.70037 -8.47113 -7.79685 -7.24961 -6.00097 -4.05338 1.64323 1.73292 3.28986 3.36903 3.39039 3.40358 4.06092 4.41826 4.95984 5.08762 5.13634 5.15118 5.19655 5.25976 5.33577 5.42734 5.60304 5.63991 5.73119 5.79402 5.85921 6.03063 6.12070 6.30710 6.34996 6.40688 6.54514 6.62357 6.66766 6.86914 6.92980 6.98482 7.03312 7.18396 7.29218 7.57109 7.58129 7.81055 7.94714 8.28265 8.41706 8.70186 9.05266 9.60105 11.06798 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.006917 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.267777 B = 4047.135650 C = 5419.862326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C 0.126 3.874 4 H 0.079 0.921 5 N -0.676 5.676 6 C 0.212 3.788 7 H 0.004 0.996 8 C -0.121 4.121 9 C -0.516 4.516 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.284 1.284 17 C -0.127 4.127 18 C -0.068 4.068 19 C -0.203 4.203 20 C 0.112 3.888 21 O -0.323 6.323 22 C 0.029 3.971 23 C -0.152 4.152 24 C -0.076 4.076 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.329 0.671 31 H 0.004 0.996 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.259 0.741 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.124 0.876 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 -11.533 -3.559 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C 0.015 3.985 4 H 0.097 0.903 5 N -0.307 5.307 6 C 0.105 3.895 7 H 0.022 0.978 8 C -0.179 4.179 9 C -0.554 4.554 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.129 4.129 18 C -0.087 4.087 19 C -0.222 4.222 20 C 0.068 3.932 21 O -0.237 6.237 22 C -0.066 4.066 23 C -0.170 4.170 24 C -0.095 4.095 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.024 0.976 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.142 0.858 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.570 -11.360 -3.873 13.683 hybrid contribution 1.233 0.839 1.166 1.893 sum 7.804 -10.521 -2.707 13.376 Atomic orbital electron populations 1.21655 0.95458 1.00177 1.02654 1.21465 0.96367 0.95545 1.00698 1.20625 0.87080 0.95105 0.95719 0.90319 1.60952 1.55455 1.10946 1.03298 1.19082 0.93462 0.80978 0.96004 0.97839 1.21697 0.98089 1.01781 0.96333 1.21275 1.48856 0.91425 0.93880 0.92412 1.24894 0.95180 0.97363 0.96459 1.69917 1.49993 1.04932 1.27922 0.86531 0.77697 0.79410 0.84293 1.19818 1.21201 1.20992 1.20834 0.98248 1.00604 0.93225 1.20735 0.92524 0.96929 0.98485 1.21135 0.96030 1.08569 0.96427 1.18959 0.82069 0.97896 0.94305 1.86020 1.15662 1.86924 1.35082 1.22992 0.95897 1.00615 0.87133 1.20334 0.93020 1.06496 0.97198 1.20858 0.93343 0.97828 0.97478 0.93650 0.94200 0.90771 0.92948 0.92502 0.85141 0.97650 0.94996 0.90656 0.93079 0.85755 0.85912 0.88649 0.92641 0.92904 0.85757 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.85 37.15 0.37 -1.69 16 2 C -0.10 -1.52 5.59 -26.74 -0.15 -1.67 16 3 C 0.13 2.22 2.04 -68.86 -0.14 2.07 16 4 H 0.08 1.48 7.03 -51.93 -0.37 1.11 16 5 N -0.68 -13.90 5.40 -102.17 -0.55 -14.45 16 6 C 0.21 5.30 2.41 -68.86 -0.17 5.13 16 7 H 0.00 0.11 7.53 -51.93 -0.39 -0.28 16 8 C -0.12 -2.98 9.12 37.16 0.34 -2.65 16 9 C -0.52 -14.08 8.59 -34.44 -0.30 -14.37 16 10 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 11 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 12 N -0.89 -25.63 11.38 55.43 0.63 -25.00 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C -0.13 -2.19 4.48 -104.60 -0.47 -2.66 16 18 C -0.07 -1.14 9.14 -39.61 -0.36 -1.50 16 19 C -0.20 -3.15 9.04 -39.43 -0.36 -3.51 16 20 C 0.11 1.78 6.69 -39.22 -0.26 1.51 16 21 O -0.32 -4.66 10.50 -19.44 -0.20 -4.86 16 22 C 0.03 0.30 9.81 101.05 0.99 1.29 16 23 C -0.15 -2.38 9.99 -39.43 -0.39 -2.77 16 24 C -0.08 -1.23 9.66 -39.60 -0.38 -1.62 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.22 7.63 -51.93 -0.40 0.83 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.33 6.69 5.87 -39.29 -0.23 6.46 16 31 H 0.00 0.10 7.42 -51.93 -0.39 -0.28 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 2.04 6.25 -51.93 -0.32 1.71 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.12 1.99 6.48 -52.48 -0.34 1.65 16 36 H 0.12 1.61 6.30 -52.49 -0.33 1.28 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 39 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 40 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.13 1.79 8.03 -52.49 -0.42 1.37 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -29.60 330.53 -8.01 -37.62 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.47 Total: 6.08 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -1.38 Total: -20.78 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.08 Total: -39.45 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.20 Total: -4.86 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.60 -8.01 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.008 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds