Wall clock time and date at job start Mon Mar 30 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47514 * 2 1 4 4 H 1.09002 * 109.46635 * 304.87698 * 3 2 1 5 5 N 1.46906 * 109.47100 * 64.87495 * 3 2 1 6 6 C 1.46901 * 110.99861 * 202.41124 * 5 3 2 7 7 H 1.08997 * 109.47608 * 326.02560 * 6 5 3 8 8 C 1.53004 * 109.46903 * 86.02371 * 6 5 3 9 9 C 1.50695 * 109.47300 * 206.02165 * 6 5 3 10 10 H 1.08004 * 120.00001 * 0.02562 * 9 6 5 11 11 C 1.37879 * 120.00110 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00160 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 119.99614 * 179.97438 * 11 9 6 14 14 H 1.48494 * 109.47313 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46882 * 120.00382 * 13 11 9 16 16 H 1.48497 * 109.47151 * 239.99798 * 13 11 9 17 17 C 1.50701 * 109.47377 * 184.87952 * 3 2 1 18 18 C 1.38260 * 119.94200 * 279.72331 * 17 3 2 19 19 C 1.38150 * 120.05573 * 179.72491 * 18 17 3 20 20 C 1.38734 * 119.93809 * 0.54963 * 19 18 17 21 21 O 1.35906 * 120.05096 * 179.74640 * 20 19 18 22 22 C 1.42897 * 117.00225 * 359.97438 * 21 20 19 23 23 C 1.38726 * 119.89263 * 359.72499 * 20 19 18 24 24 C 1.38151 * 119.94496 * 0.02562 * 23 20 19 25 25 H 1.09006 * 109.47085 * 64.33534 * 1 2 3 26 26 H 1.09006 * 109.47169 * 184.33553 * 1 2 3 27 27 H 1.08998 * 109.47148 * 304.33478 * 1 2 3 28 28 H 1.09003 * 109.47644 * 239.99559 * 2 1 3 29 29 H 1.09006 * 109.47169 * 120.00119 * 2 1 3 30 30 H 1.00896 * 110.99644 * 78.46316 * 5 3 2 31 31 H 1.09000 * 109.47122 * 305.92618 * 8 6 5 32 32 H 1.09000 * 109.47147 * 65.92055 * 8 6 5 33 33 H 1.09000 * 109.47315 * 185.92423 * 8 6 5 34 34 H 0.96993 * 119.99754 * 179.97438 * 12 11 9 35 35 H 1.08005 * 119.97534 * 0.02562 * 18 17 3 36 36 H 1.07995 * 120.02974 * 180.27149 * 19 18 17 37 37 H 1.08999 * 109.47399 * 179.97438 * 22 21 20 38 38 H 1.09005 * 109.46763 * 300.00083 * 22 21 20 39 39 H 1.09000 * 109.47418 * 59.99395 * 22 21 20 40 40 H 1.07999 * 120.02794 * 179.97438 * 23 20 19 41 41 H 1.07990 * 119.97306 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6071 1.9808 -0.8431 5 7 1.6488 2.1002 1.2540 6 6 1.6301 3.5608 1.0987 7 1 2.4155 3.8627 0.4059 8 6 0.2703 3.9979 0.5500 9 6 1.8640 4.2114 2.4377 10 1 2.0123 3.6009 3.3162 11 6 1.8888 5.5861 2.5413 12 7 1.7077 6.3295 1.4717 13 14 2.1781 6.3924 4.2014 14 1 2.3515 5.3433 5.2378 15 1 3.4017 7.2316 4.1375 16 1 1.0118 7.2436 4.5482 17 6 3.5422 1.4441 -0.1209 18 6 4.3245 1.2091 0.9946 19 6 5.7017 1.2045 0.8854 20 6 6.2996 1.4472 -0.3427 21 8 7.6543 1.4483 -0.4517 22 6 8.4013 1.1926 0.7394 23 6 5.5125 1.6883 -1.4593 24 6 4.1357 1.6868 -1.3458 25 1 -0.3633 0.4451 -0.9263 26 1 -0.3634 -1.0248 0.0777 27 1 -0.3633 0.5796 0.8486 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.2560 1.8249 2.0113 31 1 0.0543 3.4478 -0.3659 32 1 -0.5034 3.7907 1.2892 33 1 0.2914 5.0664 0.3356 34 1 1.7248 7.2966 1.5448 35 1 3.8586 1.0242 1.9513 36 1 6.3123 1.0166 1.7561 37 1 9.4671 1.2218 0.5132 38 1 8.1668 1.9521 1.4853 39 1 8.1395 0.2086 1.1283 40 1 5.9757 1.8779 -2.4163 41 1 3.5225 1.8740 -2.2148 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:37 Heat of formation + Delta-G solvation = -39.540667 kcal Electronic energy + Delta-G solvation = -20228.690837 eV Core-core repulsion = 17300.728597 eV Total energy + Delta-G solvation = -2927.962240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18212 -39.42101 -37.28579 -35.36401 -33.16719 -32.05775 -31.30310 -29.52809 -28.04950 -27.28885 -25.87997 -23.73017 -22.72918 -22.07559 -20.92039 -19.18006 -18.44343 -17.35342 -16.72219 -16.66589 -16.62828 -15.79200 -15.65154 -15.23918 -14.80316 -14.61067 -14.32907 -14.10316 -13.73148 -13.61469 -13.39759 -12.99415 -12.88810 -12.81939 -12.65523 -12.45889 -12.22252 -12.16472 -12.03574 -11.78815 -11.76100 -11.51691 -11.36113 -10.81321 -10.57107 -9.93603 -9.10604 -8.90001 -8.11431 -6.23827 0.40857 0.47897 1.39183 1.41205 1.52265 2.38563 2.41455 2.81317 3.18142 3.69115 3.81904 3.88542 3.98237 4.29713 4.37401 4.37530 4.39094 4.51531 4.55668 4.64086 4.70517 4.80334 4.83769 4.93260 5.08717 5.10888 5.13531 5.21873 5.29168 5.32607 5.38961 5.42183 5.52593 5.65009 5.67847 5.78396 5.83430 5.93066 6.24741 6.45516 6.53245 6.83480 7.06521 7.46120 8.94845 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.006917 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.267777 B = 4047.135650 C = 5419.862326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C 0.129 3.871 4 H 0.064 0.936 5 N -0.670 5.670 6 C 0.222 3.778 7 H -0.032 1.032 8 C -0.108 4.108 9 C -0.531 4.531 10 H 0.057 0.943 11 C 0.013 3.987 12 N -0.918 5.918 13 Si 0.956 3.044 14 H -0.265 1.265 15 H -0.284 1.284 16 H -0.281 1.281 17 C -0.146 4.146 18 C -0.082 4.082 19 C -0.207 4.207 20 C 0.107 3.893 21 O -0.335 6.335 22 C 0.019 3.981 23 C -0.161 4.161 24 C -0.085 4.085 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.331 0.669 31 H 0.023 0.977 32 H 0.025 0.975 33 H 0.049 0.951 34 H 0.260 0.740 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.123 0.877 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.141 0.859 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.071 -12.652 -2.987 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C 0.018 3.982 4 H 0.082 0.918 5 N -0.300 5.300 6 C 0.114 3.886 7 H -0.014 1.014 8 C -0.166 4.166 9 C -0.569 4.569 10 H 0.076 0.924 11 C -0.186 4.186 12 N -0.558 5.558 13 Si 0.782 3.218 14 H -0.189 1.189 15 H -0.210 1.210 16 H -0.206 1.206 17 C -0.148 4.148 18 C -0.101 4.101 19 C -0.225 4.225 20 C 0.062 3.938 21 O -0.249 6.249 22 C -0.075 4.075 23 C -0.180 4.180 24 C -0.104 4.104 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.141 0.859 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.159 0.841 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.487 -12.505 -3.298 14.944 hybrid contribution 1.033 1.147 0.950 1.813 sum 8.520 -11.358 -2.348 14.391 Atomic orbital electron populations 1.21615 0.95113 1.01253 1.01621 1.21413 0.96529 0.93537 1.01783 1.20628 0.87776 0.96268 0.93513 0.91827 1.60874 1.55912 1.08332 1.04902 1.18794 0.92143 0.83467 0.94212 1.01438 1.21508 0.97880 1.00299 0.96963 1.21611 1.48654 0.91905 0.94757 0.92432 1.25686 0.95013 0.98039 0.99830 1.70049 1.50778 1.05114 1.29857 0.85535 0.77497 0.78456 0.80310 1.18906 1.20996 1.20637 1.20839 0.97887 1.01972 0.94056 1.20865 0.93261 0.97530 0.98428 1.21374 0.95779 1.08032 0.97325 1.19139 0.82976 0.97324 0.94349 1.86012 1.14918 1.86762 1.37209 1.23317 0.96888 1.01317 0.86025 1.20598 0.92967 1.06215 0.98171 1.21055 0.93964 0.97710 0.97662 0.93614 0.91863 0.93053 0.91143 0.92036 0.84984 0.95814 0.95545 0.93224 0.93070 0.85582 0.83712 0.85930 0.92676 0.91532 0.84138 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.85 71.98 0.71 -3.10 16 2 C -0.09 -2.67 5.59 30.59 0.17 -2.50 16 3 C 0.13 4.51 2.04 44.17 0.09 4.60 16 4 H 0.06 2.40 7.03 -2.39 -0.02 2.38 16 5 N -0.67 -27.66 5.40 -477.15 -2.57 -30.23 16 6 C 0.22 11.31 2.41 44.17 0.11 11.42 16 7 H -0.03 -1.84 7.53 -2.39 -0.02 -1.86 16 8 C -0.11 -5.44 9.12 71.98 0.66 -4.78 16 9 C -0.53 -29.20 8.59 25.60 0.22 -28.98 16 10 H 0.06 3.10 7.60 -2.91 -0.02 3.08 16 11 C 0.01 0.74 5.30 84.66 0.45 1.19 16 12 N -0.92 -53.78 11.38 21.45 0.24 -53.54 16 13 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 14 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 C -0.15 -4.99 4.48 -19.85 -0.09 -5.08 16 18 C -0.08 -2.71 9.14 22.25 0.20 -2.51 16 19 C -0.21 -6.18 9.04 22.37 0.20 -5.97 16 20 C 0.11 3.27 6.69 22.51 0.15 3.42 16 21 O -0.33 -9.09 10.50 -92.49 -0.97 -10.06 16 22 C 0.02 0.34 9.81 113.37 1.11 1.45 16 23 C -0.16 -4.91 9.99 22.37 0.22 -4.69 16 24 C -0.09 -2.73 9.66 22.26 0.22 -2.51 16 25 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.05 1.65 7.63 -2.39 -0.02 1.63 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.33 13.46 5.87 -89.70 -0.53 12.93 16 31 H 0.02 1.05 7.42 -2.39 -0.02 1.03 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 2.74 6.25 -2.39 -0.01 2.73 16 34 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.13 3.99 6.48 -2.91 -0.02 3.97 16 36 H 0.15 3.53 6.30 -2.91 -0.02 3.51 16 37 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.01 7.66 -2.38 -0.02 0.99 16 39 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 40 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.14 3.88 8.03 -2.92 -0.02 3.86 16 Total: -1.00 -63.18 330.53 3.62 -59.56 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.48 Total: 26.34 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 4.42 Total: -38.06 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -2.33 Total: -83.77 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.97 Total: -10.06 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -63.18 3.62 -59.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.020 kcal (2) G-P(sol) polarization free energy of solvation -63.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds