Wall clock time and date at job start Mon Mar 30 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47075 * 2 1 4 4 H 1.09001 * 109.47592 * 54.27634 * 3 2 1 5 5 N 1.46897 * 109.47231 * 294.27276 * 3 2 1 6 6 C 1.46905 * 111.00404 * 155.80973 * 5 3 2 7 7 H 1.09006 * 109.46801 * 34.35455 * 6 5 3 8 8 C 1.52991 * 109.47356 * 274.35732 * 6 5 3 9 9 C 1.50698 * 109.47267 * 154.35163 * 6 5 3 10 10 H 1.07999 * 120.00188 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00200 * 180.02562 * 9 6 5 12 12 N 1.31517 * 119.99750 * 0.02562 * 11 9 6 13 13 Si 1.86802 * 120.00352 * 180.02562 * 11 9 6 14 14 H 1.48502 * 109.46806 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47037 * 119.99508 * 13 11 9 16 16 H 1.48493 * 109.47087 * 239.99692 * 13 11 9 17 17 C 1.50707 * 109.47145 * 174.27588 * 3 2 1 18 18 C 1.38265 * 119.94032 * 79.72612 * 17 3 2 19 19 C 1.38148 * 120.04937 * 179.72844 * 18 17 3 20 20 C 1.38734 * 119.94401 * 0.54575 * 19 18 17 21 21 O 1.35904 * 120.05457 * 179.75001 * 20 19 18 22 22 C 1.42910 * 116.99968 * 359.97438 * 21 20 19 23 23 C 1.38726 * 119.89158 * 359.72356 * 20 19 18 24 24 C 1.38148 * 119.94233 * 0.02562 * 23 20 19 25 25 H 1.08997 * 109.47352 * 306.37588 * 1 2 3 26 26 H 1.09004 * 109.46512 * 66.37838 * 1 2 3 27 27 H 1.08999 * 109.47352 * 186.37380 * 1 2 3 28 28 H 1.08998 * 109.47131 * 239.99126 * 2 1 3 29 29 H 1.09004 * 109.46330 * 119.99519 * 2 1 3 30 30 H 1.00904 * 110.99676 * 31.86038 * 5 3 2 31 31 H 1.08996 * 109.47425 * 173.57916 * 8 6 5 32 32 H 1.09001 * 109.47221 * 293.57433 * 8 6 5 33 33 H 1.09001 * 109.47471 * 53.58015 * 8 6 5 34 34 H 0.97002 * 120.00165 * 180.02562 * 12 11 9 35 35 H 1.07998 * 119.97603 * 359.97438 * 18 17 3 36 36 H 1.08006 * 120.02472 * 180.27224 * 19 18 17 37 37 H 1.08999 * 109.46571 * 299.99540 * 22 21 20 38 38 H 1.08994 * 109.47150 * 59.99817 * 22 21 20 39 39 H 1.08995 * 109.47079 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.03266 * 179.97438 * 23 20 19 41 41 H 1.07998 * 119.97182 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5954 1.9850 0.8343 5 7 1.6664 2.0939 -1.2625 6 6 1.6043 3.5530 -1.1039 7 1 2.3664 3.8740 -0.3936 8 6 0.2219 3.9510 -0.5832 9 6 1.8489 4.2140 -2.4359 10 1 2.0317 3.6106 -3.3127 11 6 1.8392 5.5891 -2.5353 12 7 1.6171 6.3240 -1.4674 13 14 2.1417 6.4085 -4.1865 14 1 2.3647 5.3677 -5.2221 15 1 0.9605 7.2294 -4.5555 16 1 3.3408 7.2796 -4.0946 17 6 3.5404 1.4448 0.1417 18 6 4.3379 1.1931 -0.9593 19 6 5.7136 1.2003 -0.8332 20 6 6.2945 1.4491 0.4019 21 8 7.6475 1.4516 0.5296 22 6 8.4110 1.1899 -0.6498 23 6 5.4919 1.6958 1.5062 24 6 4.1168 1.6926 1.3738 25 1 -0.3634 0.6095 0.8274 26 1 -0.3632 0.4118 -0.9416 27 1 -0.3634 -1.0213 0.1141 28 1 1.8934 -0.5140 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 0.7923 1.7306 -1.6120 31 1 0.2118 5.0173 -0.3574 32 1 -0.5290 3.7335 -1.3427 33 1 -0.0021 3.3860 0.3216 34 1 1.6099 7.2914 -1.5373 35 1 3.8852 0.9947 -1.9195 36 1 6.3363 1.0080 -1.6945 37 1 8.1552 0.2034 -1.0366 38 1 8.1864 1.9450 -1.4030 39 1 9.4736 1.2218 -0.4092 40 1 5.9417 1.8893 2.4688 41 1 3.4916 1.8851 2.2331 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170806572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:40 Heat of formation + Delta-G solvation = -22.171922 kcal Electronic energy + Delta-G solvation = -20195.743442 eV Core-core repulsion = 17268.534367 eV Total energy + Delta-G solvation = -2927.209075 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83513 -38.02153 -35.98629 -33.64391 -31.36076 -30.65901 -30.06355 -27.87457 -26.90038 -25.12285 -24.53626 -22.33835 -21.53587 -20.42627 -19.53914 -17.83739 -16.25725 -16.06287 -15.53919 -15.15912 -14.84897 -14.53483 -14.10379 -13.95428 -13.42487 -13.09643 -12.77770 -12.51970 -12.43997 -12.17686 -12.04827 -11.73070 -11.60922 -11.08390 -11.03679 -10.91374 -10.76482 -10.57604 -10.51413 -10.30264 -10.24569 -10.03209 -9.76036 -8.91508 -8.53451 -8.32494 -7.65126 -7.22419 -5.94132 -3.96099 1.79100 1.90522 3.33242 3.40991 3.45611 3.49145 4.20683 4.47297 5.04820 5.10014 5.21925 5.24265 5.28650 5.38310 5.38827 5.41151 5.51040 5.54334 5.74061 5.84762 5.89052 6.04594 6.12182 6.15505 6.19188 6.40315 6.51391 6.58739 6.70464 6.73655 6.84270 6.89643 7.14430 7.16383 7.20155 7.48670 7.70609 7.77170 7.93795 8.32952 8.60661 8.67369 9.10823 9.68739 11.13604 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.006825 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.229896 B = 4101.639548 C = 5469.545715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.126 3.874 4 H 0.043 0.957 5 N -0.678 5.678 6 C 0.213 3.787 7 H 0.034 0.966 8 C -0.165 4.165 9 C -0.491 4.491 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.091 4.091 18 C -0.037 4.037 19 C -0.213 4.213 20 C 0.112 3.888 21 O -0.325 6.325 22 C 0.030 3.970 23 C -0.158 4.158 24 C -0.082 4.082 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.328 0.672 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.004 0.996 34 H 0.258 0.742 35 H 0.133 0.867 36 H 0.121 0.879 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.629 -12.107 3.876 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.016 3.984 4 H 0.061 0.939 5 N -0.309 5.309 6 C 0.106 3.894 7 H 0.052 0.948 8 C -0.224 4.224 9 C -0.530 4.530 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.213 1.213 17 C -0.093 4.093 18 C -0.056 4.056 19 C -0.231 4.231 20 C 0.067 3.933 21 O -0.239 6.239 22 C -0.066 4.066 23 C -0.176 4.176 24 C -0.101 4.101 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.102 0.898 32 H 0.048 0.952 33 H 0.023 0.977 34 H 0.068 0.932 35 H 0.151 0.849 36 H 0.139 0.861 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.372 -11.877 3.836 14.014 hybrid contribution -0.630 0.834 -0.621 1.216 sum 5.742 -11.043 3.215 12.856 Atomic orbital electron populations 1.21820 0.96082 1.01062 1.02147 1.21671 0.95413 0.96526 1.02058 1.20334 0.90600 0.93682 0.93808 0.93901 1.60819 1.37248 1.07858 1.24971 1.19166 0.92434 0.81083 0.96764 0.94798 1.22407 0.99757 1.03827 0.96452 1.21165 1.46636 0.90672 0.94493 0.92046 1.24936 0.95692 0.97455 0.96434 1.69912 1.50735 1.05075 1.27991 0.86513 0.77594 0.79365 0.84345 1.19800 1.21265 1.21253 1.19833 0.95866 1.00732 0.92819 1.20833 0.91497 0.94206 0.99036 1.21225 0.96502 1.09267 0.96136 1.18970 0.81966 0.97975 0.94361 1.86008 1.15618 1.86888 1.35346 1.22971 0.95478 1.00577 0.87541 1.20222 0.92739 1.07412 0.97276 1.20805 0.93499 0.98384 0.97383 0.92925 0.92264 0.93038 0.91344 0.92139 0.85370 0.89819 0.95202 0.97733 0.93248 0.84880 0.86125 0.92948 0.92663 0.88801 0.85987 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.63 37.16 0.36 -1.62 16 2 C -0.12 -1.67 5.50 -26.73 -0.15 -1.82 16 3 C 0.13 2.21 2.04 -68.87 -0.14 2.07 16 4 H 0.04 0.80 7.00 -51.93 -0.36 0.44 16 5 N -0.68 -13.80 5.29 -102.17 -0.54 -14.34 16 6 C 0.21 5.29 2.38 -68.87 -0.16 5.13 16 7 H 0.03 0.96 7.60 -51.93 -0.39 0.56 16 8 C -0.17 -3.95 8.84 37.15 0.33 -3.62 16 9 C -0.49 -13.54 8.84 -34.44 -0.30 -13.84 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 12 N -0.90 -26.02 11.40 55.43 0.63 -25.38 16 13 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 17 C -0.09 -1.63 4.57 -104.60 -0.48 -2.11 16 18 C -0.04 -0.66 9.32 -39.60 -0.37 -1.03 16 19 C -0.21 -3.47 9.04 -39.43 -0.36 -3.82 16 20 C 0.11 1.83 6.69 -39.22 -0.26 1.57 16 21 O -0.32 -4.85 10.50 -19.44 -0.20 -5.06 16 22 C 0.03 0.32 9.81 101.05 0.99 1.31 16 23 C -0.16 -2.55 9.99 -39.43 -0.39 -2.95 16 24 C -0.08 -1.36 9.66 -39.60 -0.38 -1.75 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.80 6.68 -51.93 -0.35 0.45 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.33 6.32 6.36 -39.29 -0.25 6.07 16 31 H 0.08 2.23 6.27 -51.93 -0.33 1.91 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.00 0.08 7.41 -51.93 -0.38 -0.30 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.13 2.39 7.72 -52.49 -0.41 1.98 16 36 H 0.12 1.69 6.30 -52.48 -0.33 1.36 16 37 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 38 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.12 1.78 8.03 -52.49 -0.42 1.36 16 LS Contribution 331.35 15.07 4.99 4.99 Total: -1.00 -29.81 331.35 -8.08 -37.89 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.52 Total: 6.21 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -1.41 Total: -21.03 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.09 Total: -39.72 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.20 Total: -5.06 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.81 -8.08 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.714 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds