Wall clock time and date at job start Mon Mar 30 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47075 * 2 1 4 4 H 1.09001 * 109.47592 * 54.27634 * 3 2 1 5 5 N 1.46897 * 109.47231 * 294.27276 * 3 2 1 6 6 C 1.46905 * 111.00404 * 155.80973 * 5 3 2 7 7 H 1.09006 * 109.46801 * 34.35455 * 6 5 3 8 8 C 1.52991 * 109.47356 * 274.35732 * 6 5 3 9 9 C 1.50698 * 109.47267 * 154.35163 * 6 5 3 10 10 H 1.07999 * 120.00188 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00200 * 180.02562 * 9 6 5 12 12 N 1.31517 * 119.99750 * 0.02562 * 11 9 6 13 13 Si 1.86802 * 120.00352 * 180.02562 * 11 9 6 14 14 H 1.48502 * 109.46806 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47037 * 119.99508 * 13 11 9 16 16 H 1.48493 * 109.47087 * 239.99692 * 13 11 9 17 17 C 1.50707 * 109.47145 * 174.27588 * 3 2 1 18 18 C 1.38265 * 119.94032 * 79.72612 * 17 3 2 19 19 C 1.38148 * 120.04937 * 179.72844 * 18 17 3 20 20 C 1.38734 * 119.94401 * 0.54575 * 19 18 17 21 21 O 1.35904 * 120.05457 * 179.75001 * 20 19 18 22 22 C 1.42910 * 116.99968 * 359.97438 * 21 20 19 23 23 C 1.38726 * 119.89158 * 359.72356 * 20 19 18 24 24 C 1.38148 * 119.94233 * 0.02562 * 23 20 19 25 25 H 1.08997 * 109.47352 * 306.37588 * 1 2 3 26 26 H 1.09004 * 109.46512 * 66.37838 * 1 2 3 27 27 H 1.08999 * 109.47352 * 186.37380 * 1 2 3 28 28 H 1.08998 * 109.47131 * 239.99126 * 2 1 3 29 29 H 1.09004 * 109.46330 * 119.99519 * 2 1 3 30 30 H 1.00904 * 110.99676 * 31.86038 * 5 3 2 31 31 H 1.08996 * 109.47425 * 173.57916 * 8 6 5 32 32 H 1.09001 * 109.47221 * 293.57433 * 8 6 5 33 33 H 1.09001 * 109.47471 * 53.58015 * 8 6 5 34 34 H 0.97002 * 120.00165 * 180.02562 * 12 11 9 35 35 H 1.07998 * 119.97603 * 359.97438 * 18 17 3 36 36 H 1.08006 * 120.02472 * 180.27224 * 19 18 17 37 37 H 1.08999 * 109.46571 * 299.99540 * 22 21 20 38 38 H 1.08994 * 109.47150 * 59.99817 * 22 21 20 39 39 H 1.08995 * 109.47079 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.03266 * 179.97438 * 23 20 19 41 41 H 1.07998 * 119.97182 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5954 1.9850 0.8343 5 7 1.6664 2.0939 -1.2625 6 6 1.6043 3.5530 -1.1039 7 1 2.3664 3.8740 -0.3936 8 6 0.2219 3.9510 -0.5832 9 6 1.8489 4.2140 -2.4359 10 1 2.0317 3.6106 -3.3127 11 6 1.8392 5.5891 -2.5353 12 7 1.6171 6.3240 -1.4674 13 14 2.1417 6.4085 -4.1865 14 1 2.3647 5.3677 -5.2221 15 1 0.9605 7.2294 -4.5555 16 1 3.3408 7.2796 -4.0946 17 6 3.5404 1.4448 0.1417 18 6 4.3379 1.1931 -0.9593 19 6 5.7136 1.2003 -0.8332 20 6 6.2945 1.4491 0.4019 21 8 7.6475 1.4516 0.5296 22 6 8.4110 1.1899 -0.6498 23 6 5.4919 1.6958 1.5062 24 6 4.1168 1.6926 1.3738 25 1 -0.3634 0.6095 0.8274 26 1 -0.3632 0.4118 -0.9416 27 1 -0.3634 -1.0213 0.1141 28 1 1.8934 -0.5140 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 0.7923 1.7306 -1.6120 31 1 0.2118 5.0173 -0.3574 32 1 -0.5290 3.7335 -1.3427 33 1 -0.0021 3.3860 0.3216 34 1 1.6099 7.2914 -1.5373 35 1 3.8852 0.9947 -1.9195 36 1 6.3363 1.0080 -1.6945 37 1 8.1552 0.2034 -1.0366 38 1 8.1864 1.9450 -1.4030 39 1 9.4736 1.2218 -0.4092 40 1 5.9417 1.8893 2.4688 41 1 3.4916 1.8851 2.2331 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:40 Heat of formation + Delta-G solvation = -39.326244 kcal Electronic energy + Delta-G solvation = -20196.487309 eV Core-core repulsion = 17268.534367 eV Total energy + Delta-G solvation = -2927.952942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05738 -39.34731 -37.44678 -35.39288 -33.14783 -31.93217 -31.31794 -29.38772 -28.07169 -27.20249 -25.87584 -23.60395 -22.73388 -22.27437 -20.97354 -19.01036 -18.30855 -17.30820 -16.80806 -16.58352 -16.35666 -16.02750 -15.62752 -15.25779 -14.65221 -14.47039 -14.30015 -14.14412 -13.66347 -13.63329 -13.42441 -13.22792 -12.87994 -12.82037 -12.70346 -12.52248 -12.23151 -12.07686 -11.98197 -11.86124 -11.72511 -11.54390 -11.36940 -10.93261 -10.47068 -9.82648 -8.97026 -8.87347 -8.07164 -6.16508 0.50242 0.59846 1.40302 1.42281 1.53969 2.43971 2.44638 2.90592 3.22141 3.63117 4.00611 4.02170 4.05069 4.23339 4.32299 4.37791 4.40775 4.52879 4.59826 4.63615 4.72770 4.79003 4.81626 4.87592 4.89782 4.99247 5.12981 5.15654 5.21236 5.28213 5.40360 5.46917 5.49989 5.56061 5.73121 5.80002 5.91868 5.95789 6.32639 6.52448 6.72334 6.92108 7.02155 7.53211 8.99130 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.006825 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.229896 B = 4101.639548 C = 5469.545715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.129 3.871 4 H 0.030 0.970 5 N -0.675 5.675 6 C 0.224 3.776 7 H -0.004 1.004 8 C -0.151 4.151 9 C -0.506 4.506 10 H 0.055 0.945 11 C 0.007 3.993 12 N -0.924 5.924 13 Si 0.955 3.045 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.286 1.286 17 C -0.111 4.111 18 C -0.054 4.054 19 C -0.216 4.216 20 C 0.107 3.893 21 O -0.336 6.336 22 C 0.020 3.980 23 C -0.165 4.165 24 C -0.090 4.090 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.335 0.665 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.026 0.974 34 H 0.258 0.742 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.122 0.878 40 H 0.140 0.860 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -13.197 3.538 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C 0.018 3.982 4 H 0.048 0.952 5 N -0.307 5.307 6 C 0.115 3.885 7 H 0.014 0.986 8 C -0.211 4.211 9 C -0.545 4.545 10 H 0.073 0.927 11 C -0.191 4.191 12 N -0.565 5.565 13 Si 0.781 3.219 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.212 1.212 17 C -0.112 4.112 18 C -0.072 4.072 19 C -0.235 4.235 20 C 0.062 3.938 21 O -0.250 6.250 22 C -0.075 4.075 23 C -0.184 4.184 24 C -0.108 4.108 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.154 0.846 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.157 0.843 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.916 -12.991 3.493 15.126 hybrid contribution -0.708 1.135 -0.485 1.423 sum 6.208 -11.856 3.007 13.717 Atomic orbital electron populations 1.21803 0.95001 1.02503 1.01528 1.21607 0.96236 0.94040 1.02873 1.20381 0.90746 0.95341 0.91683 0.95185 1.60654 1.37635 1.05481 1.26936 1.18831 0.91534 0.83565 0.94570 0.98625 1.22205 0.99351 1.02113 0.97424 1.21474 1.46507 0.91127 0.95362 0.92705 1.25689 0.95573 0.98135 0.99657 1.70044 1.51470 1.05212 1.29795 0.85552 0.77441 0.78361 0.80535 1.19124 1.20630 1.21211 1.19976 0.96020 1.01726 0.93512 1.20867 0.92328 0.95316 0.98727 1.21430 0.96189 1.08816 0.97062 1.19129 0.82906 0.97472 0.94327 1.85999 1.14847 1.86741 1.37417 1.23294 0.96479 1.01219 0.86466 1.20508 0.92715 1.06945 0.98228 1.21010 0.94104 0.98200 0.97531 0.93310 0.93053 0.90608 0.91155 0.90631 0.84598 0.92744 0.94969 0.95529 0.93271 0.85676 0.84137 0.91622 0.92813 0.85952 0.84262 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.63 71.98 0.69 -2.91 16 2 C -0.11 -2.93 5.50 30.59 0.17 -2.77 16 3 C 0.13 4.47 2.04 44.17 0.09 4.56 16 4 H 0.03 1.12 7.00 -2.39 -0.02 1.11 16 5 N -0.68 -27.58 5.29 -477.17 -2.52 -30.10 16 6 C 0.22 11.30 2.38 44.16 0.11 11.40 16 7 H 0.00 -0.24 7.60 -2.38 -0.02 -0.26 16 8 C -0.15 -7.30 8.84 71.98 0.64 -6.66 16 9 C -0.51 -28.20 8.84 25.60 0.23 -27.97 16 10 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 11 C 0.01 0.40 5.30 84.65 0.45 0.85 16 12 N -0.92 -54.42 11.40 21.45 0.24 -54.18 16 13 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 17 C -0.11 -3.97 4.57 -19.85 -0.09 -4.06 16 18 C -0.05 -1.91 9.32 22.25 0.21 -1.71 16 19 C -0.22 -6.91 9.04 22.37 0.20 -6.71 16 20 C 0.11 3.40 6.69 22.51 0.15 3.55 16 21 O -0.34 -9.51 10.50 -92.47 -0.97 -10.48 16 22 C 0.02 0.38 9.81 113.37 1.11 1.50 16 23 C -0.17 -5.23 9.99 22.37 0.22 -5.00 16 24 C -0.09 -2.96 9.66 22.25 0.22 -2.75 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.30 6.68 -2.38 -0.02 1.28 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.33 12.76 6.36 -89.69 -0.57 12.19 16 31 H 0.05 2.95 6.27 -2.39 -0.01 2.93 16 32 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.03 1.11 7.41 -2.39 -0.02 1.10 16 34 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.13 4.53 7.72 -2.91 -0.02 4.51 16 36 H 0.14 3.76 6.30 -2.91 -0.02 3.74 16 37 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 38 H 0.05 1.06 7.66 -2.39 -0.02 1.04 16 39 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 41 H 0.14 3.91 8.03 -2.91 -0.02 3.89 16 Total: -1.00 -63.89 331.35 3.60 -60.29 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.43 Total: 26.42 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 4.39 Total: -38.68 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -2.28 Total: -84.28 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.97 Total: -10.48 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.89 3.60 -60.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.961 kcal (2) G-P(sol) polarization free energy of solvation -63.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds