Wall clock time and date at job start Mon Mar 30 2020 07:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47418 * 2 1 4 4 N 1.46896 * 109.47333 * 182.71830 * 3 2 1 5 5 C 1.46904 * 111.00025 * 75.94095 * 4 3 2 6 6 C 1.50695 * 109.47588 * 199.53123 * 5 4 3 7 7 C 1.38170 * 120.02959 * 254.68612 * 6 5 4 8 8 C 1.38240 * 120.05629 * 179.97438 * 7 6 5 9 9 C 1.38285 * 120.11439 * 0.02562 * 8 7 6 10 10 C 1.38128 * 120.05477 * 359.97438 * 9 8 7 11 11 C 1.38708 * 120.03009 * 74.67697 * 6 5 4 12 12 O 1.35900 * 120.05158 * 0.02562 * 11 6 5 13 13 C 1.46898 * 111.00308 * 199.89427 * 4 3 2 14 14 H 1.09002 * 109.47259 * 186.04862 * 13 4 3 15 15 C 1.53004 * 109.47130 * 306.04938 * 13 4 3 16 16 C 1.50697 * 109.47051 * 66.04561 * 13 4 3 17 17 H 1.08003 * 119.99874 * 0.02562 * 16 13 4 18 18 C 1.37878 * 119.99994 * 180.02562 * 16 13 4 19 19 N 1.31522 * 119.99992 * 180.02562 * 18 16 13 20 20 Si 1.86796 * 120.00146 * 0.02562 * 18 16 13 21 21 H 1.48501 * 109.47102 * 89.99915 * 20 18 16 22 22 H 1.48505 * 109.47355 * 210.00287 * 20 18 16 23 23 H 1.48501 * 109.46909 * 329.99869 * 20 18 16 24 24 H 1.08994 * 109.46979 * 304.88871 * 1 2 3 25 25 H 1.09001 * 109.46702 * 64.88703 * 1 2 3 26 26 H 1.09001 * 109.46989 * 184.88465 * 1 2 3 27 27 H 1.09004 * 109.47462 * 239.99928 * 2 1 3 28 28 H 1.09007 * 109.47211 * 120.00128 * 2 1 3 29 29 H 1.08997 * 109.46886 * 62.72008 * 3 2 1 30 30 H 1.08997 * 109.46893 * 302.72249 * 3 2 1 31 31 H 1.08999 * 109.47255 * 79.53036 * 5 4 3 32 32 H 1.09005 * 109.46966 * 319.53231 * 5 4 3 33 33 H 1.07998 * 119.96843 * 0.24777 * 7 6 5 34 34 H 1.07995 * 119.94205 * 179.97438 * 8 7 6 35 35 H 1.07993 * 119.97493 * 179.97438 * 9 8 7 36 36 H 1.07995 * 120.02864 * 179.97438 * 10 9 8 37 37 H 0.96701 * 114.00132 * 264.90258 * 12 11 6 38 38 H 1.08994 * 109.46864 * 179.97438 * 15 13 4 39 39 H 1.09006 * 109.46928 * 300.00089 * 15 13 4 40 40 H 1.09002 * 109.47111 * 59.99833 * 15 13 4 41 41 H 0.96998 * 120.00095 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5076 1.4430 -0.0657 5 6 3.9739 1.1310 -1.4234 6 6 5.4080 0.6715 -1.3689 7 6 6.4205 1.5139 -1.7864 8 6 7.7363 1.0931 -1.7361 9 6 8.0428 -0.1717 -1.2686 10 6 7.0344 -1.0177 -0.8500 11 6 5.7129 -0.5976 -0.8993 12 8 4.7189 -1.4282 -0.4884 13 6 4.0549 2.7251 0.3973 14 1 5.1331 2.7387 0.2381 15 6 3.4090 3.8686 -0.3878 16 6 3.7617 2.8956 1.8656 17 1 3.2230 2.1279 2.4014 18 6 4.1811 4.0315 2.5250 19 7 3.9257 4.1800 3.8066 20 14 5.1121 5.3595 1.5983 21 1 4.1483 6.3408 1.0384 22 1 6.0412 6.0525 2.5267 23 1 5.8872 4.7409 0.4929 24 1 -0.3633 0.5878 0.8429 25 1 -0.3633 0.4362 -0.9306 26 1 -0.3633 -1.0239 0.0875 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.7171 1.9420 0.9134 30 1 1.6375 1.9702 -0.8646 31 1 3.9016 2.0226 -2.0462 32 1 3.3549 0.3404 -1.8475 33 1 6.1839 2.5036 -2.1482 34 1 8.5261 1.7529 -2.0633 35 1 9.0715 -0.4983 -1.2307 36 1 7.2742 -2.0055 -0.4853 37 1 4.5552 -1.4045 0.4644 38 1 3.8148 4.8200 -0.0439 39 1 3.6211 3.7453 -1.4499 40 1 2.3308 3.8551 -0.2286 41 1 4.2211 4.9790 4.2707 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:28 Heat of formation + Delta-G solvation = -34.651745 kcal Electronic energy + Delta-G solvation = -20839.672820 eV Core-core repulsion = 17911.922580 eV Total energy + Delta-G solvation = -2927.750241 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87109 -39.05806 -37.33297 -35.17623 -34.18982 -32.78483 -31.01182 -30.29584 -27.46545 -26.99817 -25.42236 -23.41940 -22.60219 -22.22666 -20.66563 -18.94892 -18.64006 -17.27848 -17.08528 -16.51412 -16.32074 -15.93340 -15.65715 -15.38859 -14.88587 -14.70714 -14.41502 -14.06680 -13.91326 -13.62792 -13.46953 -13.11233 -12.90843 -12.71847 -12.66070 -12.50706 -12.38431 -12.03959 -11.99094 -11.64133 -11.48355 -11.23796 -11.16517 -11.01679 -10.73589 -9.71689 -9.36830 -8.90175 -8.25921 -6.26440 0.43360 0.47257 1.27588 1.33869 1.43109 2.32071 2.73677 3.08883 3.34085 3.59615 3.94124 4.00246 4.19653 4.24283 4.31780 4.38319 4.46952 4.49045 4.56688 4.63695 4.65102 4.71347 4.77181 4.80972 4.97099 5.05906 5.07526 5.13274 5.16814 5.27392 5.36689 5.47746 5.51886 5.56716 5.61299 5.67098 5.70606 6.01907 6.11079 6.49081 6.73784 6.80121 6.94635 7.37649 8.90773 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.009197 C = 0.006386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.264771 B = 3043.764454 C = 4383.273438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C 0.064 3.936 4 N -0.520 5.520 5 C 0.096 3.904 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.138 4.138 9 C -0.109 4.109 10 C -0.161 4.161 11 C 0.114 3.886 12 O -0.500 6.500 13 C 0.188 3.812 14 H 0.032 0.968 15 C -0.182 4.182 16 C -0.492 4.492 17 H 0.041 0.959 18 C 0.013 3.987 19 N -0.949 5.949 20 Si 0.942 3.058 21 H -0.271 1.271 22 H -0.301 1.301 23 H -0.250 1.250 24 H 0.044 0.956 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.400 0.600 38 H 0.034 0.966 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.267 -8.045 -13.019 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.064 4.064 4 N -0.243 5.243 5 C -0.031 4.031 6 C -0.111 4.111 7 C -0.135 4.135 8 C -0.156 4.156 9 C -0.127 4.127 10 C -0.179 4.179 11 C 0.069 3.931 12 O -0.312 6.312 13 C 0.080 3.920 14 H 0.049 0.951 15 C -0.241 4.241 16 C -0.531 4.531 17 H 0.059 0.941 18 C -0.184 4.184 19 N -0.590 5.590 20 Si 0.770 3.230 21 H -0.198 1.198 22 H -0.229 1.229 23 H -0.174 1.174 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.258 0.742 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.394 -8.458 -13.150 16.000 hybrid contribution -0.053 1.748 0.330 1.780 sum 3.342 -6.710 -12.820 14.851 Atomic orbital electron populations 1.21703 0.94937 1.02086 1.01565 1.21414 0.95678 0.95437 1.01906 1.22030 0.87202 0.97307 0.99818 1.62001 1.08575 1.32345 1.21348 1.20957 0.92360 0.99406 0.90426 1.20260 0.96158 0.93545 1.01122 1.21179 0.93211 0.99073 1.00038 1.21392 0.96182 0.97210 1.00812 1.21317 1.00025 0.93539 0.97827 1.21689 0.91857 1.01542 1.02851 1.18426 0.87736 0.88768 0.98166 1.84613 1.54066 1.62335 1.30191 1.19516 0.94588 0.85018 0.92906 0.95051 1.22724 1.01690 0.99989 0.99680 1.21146 1.34839 1.03477 0.93590 0.94084 1.25689 0.96858 1.00457 0.95409 1.70031 1.49144 1.29214 1.10590 0.85956 0.78828 0.79738 0.78434 1.19781 1.22868 1.17362 0.93657 0.92357 0.91397 0.91618 0.92717 0.92765 0.95278 0.94248 0.89646 0.86048 0.83866 0.83088 0.84084 0.74235 0.94729 0.92400 0.92813 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.11 -3.19 6.08 30.59 0.19 -3.00 16 3 C 0.06 2.34 3.51 86.30 0.30 2.64 16 4 N -0.52 -20.20 4.29 -879.93 -3.78 -23.98 16 5 C 0.10 3.19 4.44 85.55 0.38 3.57 16 6 C -0.11 -3.60 4.82 -19.77 -0.10 -3.69 16 7 C -0.12 -3.53 9.00 22.25 0.20 -3.33 16 8 C -0.14 -3.55 10.04 22.28 0.22 -3.32 16 9 C -0.11 -2.60 10.04 22.25 0.22 -2.38 16 10 C -0.16 -4.27 9.99 22.37 0.22 -4.05 16 11 C 0.11 3.54 6.68 22.51 0.15 3.69 16 12 O -0.50 -14.77 12.84 -92.42 -1.19 -15.96 16 13 C 0.19 8.56 1.81 44.17 0.08 8.64 16 14 H 0.03 1.51 5.95 -2.39 -0.01 1.49 16 15 C -0.18 -7.55 8.03 71.98 0.58 -6.97 16 16 C -0.49 -27.48 8.26 25.60 0.21 -27.27 16 17 H 0.04 2.57 7.56 -2.91 -0.02 2.54 16 18 C 0.01 0.73 5.45 84.65 0.46 1.19 16 19 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 20 Si 0.94 44.99 24.37 68.60 1.67 46.66 16 21 H -0.27 -12.42 6.87 99.48 0.68 -11.74 16 22 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 23 H -0.25 -11.07 6.53 99.48 0.65 -10.42 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.86 6.71 -2.38 -0.02 1.85 16 28 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.05 2.36 6.56 -2.39 -0.02 2.35 16 30 H 0.03 0.99 7.33 -2.39 -0.02 0.98 16 31 H 0.04 1.27 5.99 -2.39 -0.01 1.26 16 32 H 0.09 2.68 6.35 -2.38 -0.02 2.66 16 33 H 0.12 3.50 8.00 -2.91 -0.02 3.48 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.40 10.54 9.06 -74.06 -0.67 9.87 16 38 H 0.03 1.49 3.27 -2.39 -0.01 1.48 16 39 H 0.06 2.04 6.45 -2.38 -0.02 2.02 16 40 H 0.05 2.21 6.77 -2.39 -0.02 2.20 16 41 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -65.21 319.06 1.12 -64.09 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.27 Total: 25.18 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 3.84 Total: -37.23 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -3.48 Total: -82.75 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -1.19 Total: -15.96 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.67 Total: 46.66 kcal Total: -65.21 1.12 -64.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.438 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds