Wall clock time and date at job start Mon Mar 30 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 N 1.46904 * 109.46850 * 185.15177 * 3 2 1 5 5 C 1.46901 * 110.99640 * 282.35227 * 4 3 2 6 6 C 1.50698 * 109.47475 * 76.83425 * 5 4 3 7 7 C 1.38160 * 120.02650 * 243.88701 * 6 5 4 8 8 C 1.38248 * 120.05419 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.11319 * 359.97438 * 8 7 6 10 10 C 1.38122 * 120.05528 * 0.02744 * 9 8 7 11 11 C 1.38710 * 120.02894 * 63.92530 * 6 5 4 12 12 O 1.35904 * 120.05691 * 359.96154 * 11 6 5 13 13 C 1.46896 * 110.99979 * 158.39744 * 4 3 2 14 14 H 1.08998 * 109.47329 * 174.30576 * 13 4 3 15 15 C 1.53006 * 109.47089 * 54.31017 * 13 4 3 16 16 C 1.50703 * 109.47267 * 294.30907 * 13 4 3 17 17 H 1.07996 * 119.99893 * 5.46241 * 16 13 4 18 18 C 1.37872 * 120.00238 * 185.45935 * 16 13 4 19 19 N 1.31519 * 119.99772 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00333 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46700 * 90.00105 * 20 18 16 22 22 H 1.48498 * 109.47026 * 210.00401 * 20 18 16 23 23 H 1.48497 * 109.46736 * 330.00138 * 20 18 16 24 24 H 1.09001 * 109.47175 * 60.00054 * 1 2 3 25 25 H 1.08997 * 109.47564 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47306 * 300.00377 * 1 2 3 27 27 H 1.08998 * 109.47208 * 239.99753 * 2 1 3 28 28 H 1.09002 * 109.46892 * 119.99476 * 2 1 3 29 29 H 1.08992 * 109.46995 * 65.15141 * 3 2 1 30 30 H 1.09003 * 109.47017 * 305.15002 * 3 2 1 31 31 H 1.08993 * 109.47317 * 316.82922 * 5 4 3 32 32 H 1.09004 * 109.46778 * 196.82923 * 5 4 3 33 33 H 1.07997 * 119.97627 * 0.03636 * 7 6 5 34 34 H 1.07999 * 119.94526 * 180.28039 * 8 7 6 35 35 H 1.07999 * 119.97306 * 180.02562 * 9 8 7 36 36 H 1.07995 * 120.03201 * 179.97438 * 10 9 8 37 37 H 0.96705 * 114.00093 * 270.02175 * 12 11 6 38 38 H 1.09002 * 109.46726 * 180.02562 * 15 13 4 39 39 H 1.08998 * 109.46675 * 299.99960 * 15 13 4 40 40 H 1.08998 * 109.46947 * 60.00074 * 15 13 4 41 41 H 0.97001 * 120.00112 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 -0.1244 5 6 4.1413 1.1116 1.1566 6 6 4.0410 -0.3727 1.3972 7 6 3.3124 -0.8517 2.4689 8 6 3.2205 -2.2132 2.6904 9 6 3.8567 -3.0990 1.8401 10 6 4.5863 -2.6252 0.7673 11 6 4.6807 -1.2591 0.5433 12 8 5.3980 -0.7904 -0.5117 13 6 3.9872 2.7346 -0.6336 14 1 5.0771 2.7450 -0.6207 15 6 3.4560 3.8637 0.2517 16 6 3.4997 2.9318 -2.0459 17 1 2.8200 2.2179 -2.4872 18 6 3.9212 4.0236 -2.7746 19 7 4.7484 4.8933 -2.2371 20 14 3.3174 4.2677 -4.5254 21 1 2.0691 5.0720 -4.5108 22 1 4.3560 4.9799 -5.3124 23 1 3.0472 2.9454 -5.1446 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7540 1.9290 0.9325 30 1 1.6033 1.9823 -0.8403 31 1 3.6376 1.6451 1.9625 32 1 5.1907 1.4047 1.1271 33 1 2.8142 -0.1620 3.1341 34 1 2.6468 -2.5859 3.5261 35 1 3.7830 -4.1622 2.0151 36 1 5.0833 -3.3172 0.1037 37 1 4.8825 -0.6882 -1.3235 38 1 3.8144 4.8211 -0.1265 39 1 2.3661 3.8533 0.2388 40 1 3.8087 3.7211 1.2731 41 1 5.0453 5.6613 -2.7498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170806916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:31 Heat of formation + Delta-G solvation = -20.168538 kcal Electronic energy + Delta-G solvation = -20877.374469 eV Core-core repulsion = 17950.252267 eV Total energy + Delta-G solvation = -2927.122202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75290 -37.26432 -36.11918 -33.46873 -32.47066 -31.25043 -29.56324 -28.18547 -26.11655 -25.14946 -23.77749 -22.26677 -21.02114 -20.91393 -19.17661 -17.71951 -16.37090 -15.74772 -15.53901 -15.11518 -14.84838 -14.42252 -13.95171 -13.81163 -13.50984 -13.09295 -12.59376 -12.44442 -12.38787 -12.07314 -11.74220 -11.57575 -11.33607 -11.15840 -10.96100 -10.90298 -10.84227 -10.48795 -10.37775 -10.30907 -9.98646 -9.89691 -9.62133 -8.89384 -8.48003 -8.38751 -8.15955 -7.21636 -6.01045 -4.03488 1.54307 1.56321 3.30852 3.38040 3.41204 3.87649 4.42376 4.75439 4.93559 5.10061 5.15348 5.26803 5.33701 5.49066 5.56051 5.61391 5.74070 5.88863 5.96246 6.06397 6.15436 6.21371 6.31360 6.33819 6.39847 6.50970 6.57257 6.66565 6.67244 6.75346 6.85294 6.88462 6.93058 7.09070 7.13870 7.47841 7.65441 7.83530 8.15607 8.24198 8.38510 8.59761 9.02554 9.61140 11.07503 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.006061 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.134110 B = 4618.274870 C = 4840.521226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.063 3.937 4 N -0.523 5.523 5 C 0.095 3.905 6 C -0.084 4.084 7 C -0.105 4.105 8 C -0.138 4.138 9 C -0.115 4.115 10 C -0.155 4.155 11 C 0.136 3.864 12 O -0.491 6.491 13 C 0.213 3.787 14 H 0.045 0.955 15 C -0.168 4.168 16 C -0.497 4.497 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.399 0.601 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.007 0.993 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 -11.974 7.540 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.065 4.065 4 N -0.246 5.246 5 C -0.033 4.033 6 C -0.085 4.085 7 C -0.124 4.124 8 C -0.156 4.156 9 C -0.134 4.134 10 C -0.173 4.173 11 C 0.091 3.909 12 O -0.303 6.303 13 C 0.107 3.893 14 H 0.062 0.938 15 C -0.227 4.227 16 C -0.536 4.536 17 H 0.080 0.920 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.257 0.743 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.026 0.974 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.552 -12.135 7.518 14.711 hybrid contribution -0.940 0.911 -0.682 1.476 sum -4.492 -11.225 6.836 13.889 Atomic orbital electron populations 1.21722 0.96961 1.00540 1.01305 1.21850 0.94270 0.98328 1.02434 1.22062 0.89267 0.95081 1.00096 1.62207 1.04449 1.35147 1.22836 1.20937 1.00330 0.89611 0.92430 1.20430 0.95913 0.96867 0.95323 1.20913 0.98794 0.95386 0.97314 1.20997 1.01279 0.93273 1.00077 1.20878 0.98080 0.99239 0.95184 1.21421 1.01182 0.94993 0.99754 1.18262 0.92348 0.90088 0.90246 1.84670 1.37553 1.86922 1.21117 1.19355 0.95921 0.80949 0.93086 0.93754 1.22402 0.99090 1.04796 0.96405 1.21059 1.27640 1.07749 0.97134 0.92043 1.24918 0.95152 0.96042 0.98086 1.69921 1.33273 1.13114 1.36977 0.86567 0.78275 0.78185 0.84770 1.20930 1.21358 1.19902 0.92962 0.93552 0.93466 0.92224 0.91456 0.96336 0.89975 0.94952 0.90322 0.86349 0.86523 0.86444 0.86039 0.74258 0.90378 0.95128 0.97380 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.67 16 2 C -0.13 -2.09 5.49 -26.73 -0.15 -2.24 16 3 C 0.06 1.18 3.50 -3.82 -0.01 1.17 16 4 N -0.52 -10.52 4.01 -229.47 -0.92 -11.44 16 5 C 0.10 1.74 4.09 -4.98 -0.02 1.72 16 6 C -0.08 -1.35 3.49 -104.48 -0.36 -1.71 16 7 C -0.11 -1.46 7.61 -39.61 -0.30 -1.76 16 8 C -0.14 -1.68 10.04 -39.56 -0.40 -2.07 16 9 C -0.12 -1.39 10.04 -39.61 -0.40 -1.79 16 10 C -0.15 -2.12 9.99 -39.43 -0.39 -2.52 16 11 C 0.14 2.18 6.62 -39.22 -0.26 1.92 16 12 O -0.49 -8.47 12.67 -19.44 -0.25 -8.71 16 13 C 0.21 5.14 2.18 -68.86 -0.15 4.99 16 14 H 0.04 1.21 7.83 -51.93 -0.41 0.80 16 15 C -0.17 -3.94 8.40 37.16 0.31 -3.63 16 16 C -0.50 -13.07 7.71 -34.44 -0.27 -13.34 16 17 H 0.06 1.62 7.11 -52.49 -0.37 1.24 16 18 C 0.06 1.60 5.33 -17.82 -0.09 1.51 16 19 N -0.89 -25.22 11.73 55.43 0.65 -24.57 16 20 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.04 4.14 -51.93 -0.21 0.82 16 29 H 0.02 0.35 7.11 -51.93 -0.37 -0.02 16 30 H 0.08 1.72 6.40 -51.93 -0.33 1.39 16 31 H 0.03 0.58 6.91 -51.93 -0.36 0.22 16 32 H 0.08 1.55 7.72 -51.93 -0.40 1.15 16 33 H 0.12 1.49 7.95 -52.49 -0.42 1.08 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.40 6.28 9.06 45.56 0.41 6.69 16 38 H 0.08 2.04 6.52 -51.93 -0.34 1.70 16 39 H 0.03 0.69 6.79 -51.93 -0.35 0.34 16 40 H 0.01 0.16 7.18 -51.93 -0.37 -0.22 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -27.86 323.43 -8.41 -36.27 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.62 Total: 6.96 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.12 Total: -19.42 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.27 Total: -36.00 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.25 Total: -8.71 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.86 -8.41 -36.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.098 kcal (2) G-P(sol) polarization free energy of solvation -27.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds