Wall clock time and date at job start Mon Mar 30 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 N 1.46904 * 109.46850 * 185.15177 * 3 2 1 5 5 C 1.46901 * 110.99640 * 282.35227 * 4 3 2 6 6 C 1.50698 * 109.47475 * 76.83425 * 5 4 3 7 7 C 1.38160 * 120.02650 * 243.88701 * 6 5 4 8 8 C 1.38248 * 120.05419 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.11319 * 359.97438 * 8 7 6 10 10 C 1.38122 * 120.05528 * 0.02744 * 9 8 7 11 11 C 1.38710 * 120.02894 * 63.92530 * 6 5 4 12 12 O 1.35904 * 120.05691 * 359.96154 * 11 6 5 13 13 C 1.46896 * 110.99979 * 158.39744 * 4 3 2 14 14 H 1.08998 * 109.47329 * 174.30576 * 13 4 3 15 15 C 1.53006 * 109.47089 * 54.31017 * 13 4 3 16 16 C 1.50703 * 109.47267 * 294.30907 * 13 4 3 17 17 H 1.07996 * 119.99893 * 5.46241 * 16 13 4 18 18 C 1.37872 * 120.00238 * 185.45935 * 16 13 4 19 19 N 1.31519 * 119.99772 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00333 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46700 * 90.00105 * 20 18 16 22 22 H 1.48498 * 109.47026 * 210.00401 * 20 18 16 23 23 H 1.48497 * 109.46736 * 330.00138 * 20 18 16 24 24 H 1.09001 * 109.47175 * 60.00054 * 1 2 3 25 25 H 1.08997 * 109.47564 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47306 * 300.00377 * 1 2 3 27 27 H 1.08998 * 109.47208 * 239.99753 * 2 1 3 28 28 H 1.09002 * 109.46892 * 119.99476 * 2 1 3 29 29 H 1.08992 * 109.46995 * 65.15141 * 3 2 1 30 30 H 1.09003 * 109.47017 * 305.15002 * 3 2 1 31 31 H 1.08993 * 109.47317 * 316.82922 * 5 4 3 32 32 H 1.09004 * 109.46778 * 196.82923 * 5 4 3 33 33 H 1.07997 * 119.97627 * 0.03636 * 7 6 5 34 34 H 1.07999 * 119.94526 * 180.28039 * 8 7 6 35 35 H 1.07999 * 119.97306 * 180.02562 * 9 8 7 36 36 H 1.07995 * 120.03201 * 179.97438 * 10 9 8 37 37 H 0.96705 * 114.00093 * 270.02175 * 12 11 6 38 38 H 1.09002 * 109.46726 * 180.02562 * 15 13 4 39 39 H 1.08998 * 109.46675 * 299.99960 * 15 13 4 40 40 H 1.08998 * 109.46947 * 60.00074 * 15 13 4 41 41 H 0.97001 * 120.00112 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 -0.1244 5 6 4.1413 1.1116 1.1566 6 6 4.0410 -0.3727 1.3972 7 6 3.3124 -0.8517 2.4689 8 6 3.2205 -2.2132 2.6904 9 6 3.8567 -3.0990 1.8401 10 6 4.5863 -2.6252 0.7673 11 6 4.6807 -1.2591 0.5433 12 8 5.3980 -0.7904 -0.5117 13 6 3.9872 2.7346 -0.6336 14 1 5.0771 2.7450 -0.6207 15 6 3.4560 3.8637 0.2517 16 6 3.4997 2.9318 -2.0459 17 1 2.8200 2.2179 -2.4872 18 6 3.9212 4.0236 -2.7746 19 7 4.7484 4.8933 -2.2371 20 14 3.3174 4.2677 -4.5254 21 1 2.0691 5.0720 -4.5108 22 1 4.3560 4.9799 -5.3124 23 1 3.0472 2.9454 -5.1446 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7540 1.9290 0.9325 30 1 1.6033 1.9823 -0.8403 31 1 3.6376 1.6451 1.9625 32 1 5.1907 1.4047 1.1271 33 1 2.8142 -0.1620 3.1341 34 1 2.6468 -2.5859 3.5261 35 1 3.7830 -4.1622 2.0151 36 1 5.0833 -3.3172 0.1037 37 1 4.8825 -0.6882 -1.3235 38 1 3.8144 4.8211 -0.1265 39 1 2.3661 3.8533 0.2388 40 1 3.8087 3.7211 1.2731 41 1 5.0453 5.6613 -2.7498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:31 Heat of formation + Delta-G solvation = -37.315131 kcal Electronic energy + Delta-G solvation = -20878.118001 eV Core-core repulsion = 17950.252267 eV Total energy + Delta-G solvation = -2927.865734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96231 -38.84046 -37.31894 -35.22234 -33.92732 -32.72206 -30.73794 -29.80477 -27.57559 -27.07102 -25.28322 -23.34947 -22.50435 -22.15849 -20.87229 -18.92296 -18.26356 -17.11224 -16.85015 -16.62370 -16.32401 -15.78850 -15.48427 -15.29329 -14.70379 -14.56031 -14.13306 -13.89474 -13.67989 -13.52809 -13.20728 -12.98123 -12.77890 -12.71328 -12.65144 -12.53220 -12.29388 -12.17435 -12.16668 -11.84397 -11.44979 -11.31834 -11.10788 -10.87620 -10.48027 -9.56211 -9.30913 -8.87043 -8.09417 -6.18201 0.47021 0.49086 1.42558 1.44000 1.53963 2.44134 2.79963 3.21260 3.43543 3.62831 3.94203 4.05976 4.23010 4.28152 4.35260 4.46668 4.59060 4.65336 4.69956 4.73767 4.75596 4.78769 4.88518 5.02520 5.04234 5.08296 5.16938 5.20339 5.25441 5.39531 5.50657 5.53585 5.60395 5.64753 5.70884 5.73957 5.80178 6.05685 6.22930 6.56028 6.76737 6.96038 7.01393 7.50449 8.98568 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.006061 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.134110 B = 4618.274870 C = 4840.521226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.068 3.932 4 N -0.522 5.522 5 C 0.102 3.898 6 C -0.103 4.103 7 C -0.108 4.108 8 C -0.129 4.129 9 C -0.106 4.106 10 C -0.159 4.159 11 C 0.110 3.890 12 O -0.510 6.510 13 C 0.220 3.780 14 H 0.004 0.996 15 C -0.153 4.153 16 C -0.504 4.504 17 H 0.058 0.942 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.956 3.044 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.268 1.268 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.399 0.601 38 H 0.049 0.951 39 H 0.035 0.965 40 H 0.022 0.978 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 -14.384 8.538 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.060 4.060 4 N -0.245 5.245 5 C -0.026 4.026 6 C -0.104 4.104 7 C -0.127 4.127 8 C -0.147 4.147 9 C -0.124 4.124 10 C -0.177 4.177 11 C 0.065 3.935 12 O -0.322 6.322 13 C 0.112 3.888 14 H 0.022 0.978 15 C -0.213 4.213 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.782 3.218 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.192 1.192 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.148 0.852 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.257 0.743 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.333 -14.567 8.528 17.702 hybrid contribution -0.376 1.578 -0.901 1.855 sum -5.709 -12.989 7.627 16.108 Atomic orbital electron populations 1.21693 0.94941 1.01969 1.01505 1.21746 0.95872 0.95835 1.02343 1.22038 0.87966 0.97034 0.98940 1.62137 1.05521 1.32530 1.24341 1.20820 0.98495 0.91943 0.91341 1.20239 0.98118 0.94980 0.97095 1.21092 0.98240 0.96786 0.96568 1.21388 1.00495 0.92252 1.00563 1.21308 0.96243 1.01100 0.93750 1.21618 1.01428 0.93957 1.00724 1.18558 0.93473 0.91352 0.90152 1.84659 1.38449 1.87376 1.21694 1.19058 0.93531 0.83216 0.92960 0.97796 1.22207 0.99127 1.03007 0.96947 1.21307 1.27231 1.07504 0.98198 0.92355 1.25677 0.95374 0.95901 1.01846 1.70055 1.34459 1.13587 1.38356 0.85583 0.77739 0.78207 0.80243 1.20332 1.21334 1.19244 0.93554 0.91478 0.92545 0.93407 0.90437 0.96169 0.92505 0.94565 0.93003 0.85161 0.83114 0.83005 0.84790 0.74348 0.93205 0.94627 0.95886 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.12 -3.67 5.49 30.59 0.17 -3.50 16 3 C 0.07 2.56 3.50 86.30 0.30 2.86 16 4 N -0.52 -21.62 4.01 -879.92 -3.53 -25.15 16 5 C 0.10 3.82 4.09 85.56 0.35 4.17 16 6 C -0.10 -3.24 3.49 -19.77 -0.07 -3.31 16 7 C -0.11 -2.70 7.61 22.25 0.17 -2.53 16 8 C -0.13 -2.57 10.04 22.28 0.22 -2.34 16 9 C -0.11 -2.11 10.04 22.25 0.22 -1.89 16 10 C -0.16 -4.00 9.99 22.37 0.22 -3.78 16 11 C 0.11 3.47 6.62 22.51 0.15 3.62 16 12 O -0.51 -18.25 12.67 -92.47 -1.17 -19.42 16 13 C 0.22 11.08 2.18 44.17 0.10 11.18 16 14 H 0.00 0.24 7.83 -2.39 -0.02 0.22 16 15 C -0.15 -7.45 8.40 71.98 0.60 -6.85 16 16 C -0.50 -27.30 7.71 25.60 0.20 -27.11 16 17 H 0.06 3.14 7.11 -2.91 -0.02 3.12 16 18 C 0.01 0.56 5.33 84.65 0.45 1.02 16 19 N -0.92 -53.88 11.73 21.45 0.25 -53.63 16 20 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.31 8.14 -2.38 -0.02 1.30 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 2.22 4.14 -2.39 -0.01 2.21 16 29 H 0.02 0.74 7.11 -2.39 -0.02 0.72 16 30 H 0.06 2.41 6.40 -2.39 -0.02 2.40 16 31 H 0.04 1.30 6.91 -2.39 -0.02 1.28 16 32 H 0.05 2.18 7.72 -2.38 -0.02 2.16 16 33 H 0.13 2.90 7.95 -2.91 -0.02 2.88 16 34 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.40 13.29 9.06 -74.05 -0.67 12.62 16 38 H 0.05 2.69 6.52 -2.39 -0.02 2.68 16 39 H 0.03 1.64 6.79 -2.39 -0.02 1.63 16 40 H 0.02 1.00 7.18 -2.39 -0.02 0.98 16 41 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -61.77 323.43 1.72 -60.05 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.34 Total: 23.64 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 3.80 Total: -31.36 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -3.28 Total: -78.78 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -1.17 Total: -19.42 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -61.77 1.72 -60.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.732 kcal (2) G-P(sol) polarization free energy of solvation -61.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds