Wall clock time and date at job start Mon Mar 30 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 C 1.53004 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46887 * 54.99963 * 4 3 2 6 6 C 1.52995 * 109.47212 * 174.99665 * 4 3 2 7 7 C 1.52996 * 109.47211 * 185.00127 * 6 4 3 8 8 N 1.46491 * 109.47229 * 295.00012 * 4 3 2 9 9 C 1.39676 * 120.00112 * 154.99709 * 8 4 3 10 10 C 1.39000 * 120.03640 * 0.02562 * 9 8 4 11 11 C 1.38150 * 120.05976 * 180.02562 * 10 9 8 12 12 C 1.38176 * 120.14183 * 0.23408 * 11 10 9 13 13 C 1.38918 * 120.08067 * 359.48829 * 12 11 10 14 14 O 1.35749 * 120.03368 * 180.25546 * 13 12 11 15 15 C 1.34830 * 116.99830 * 174.74237 * 14 13 12 16 16 H 1.07996 * 120.00380 * 5.05514 * 15 14 13 17 17 C 1.38652 * 119.99840 * 185.05886 * 15 14 13 18 18 N 1.31558 * 119.99980 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99889 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46725 * 90.00436 * 19 17 15 21 21 H 1.48497 * 109.47080 * 209.99917 * 19 17 15 22 22 H 1.48491 * 109.47042 * 330.00332 * 19 17 15 23 23 C 1.38754 * 120.03948 * 180.02562 * 9 8 4 24 24 H 1.09006 * 109.47471 * 300.00432 * 1 2 3 25 25 H 1.08999 * 109.47092 * 60.00384 * 1 2 3 26 26 H 1.08996 * 109.47351 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47790 * 239.99918 * 2 1 3 28 28 H 1.09008 * 109.47319 * 119.99705 * 2 1 3 29 29 H 1.09006 * 109.47097 * 59.99954 * 3 2 1 30 30 H 1.09000 * 109.47261 * 299.99860 * 3 2 1 31 31 H 1.09004 * 109.47609 * 305.00360 * 6 4 3 32 32 H 1.09001 * 109.47029 * 65.00115 * 6 4 3 33 33 H 1.09001 * 109.47133 * 60.00052 * 7 6 4 34 34 H 1.09002 * 109.47412 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47237 * 300.00082 * 7 6 4 36 36 H 0.97008 * 120.00044 * 335.00031 * 8 4 3 37 37 H 1.07999 * 119.97354 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.93185 * 179.97438 * 11 10 9 39 39 H 1.08000 * 119.96133 * 179.72069 * 12 11 10 40 40 H 0.97006 * 119.99498 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.06773 * 359.95036 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0800 2.8795 -0.1252 7 6 5.6049 2.8703 -0.2499 8 7 4.0578 0.8590 1.2527 9 6 5.3242 0.2719 1.3028 10 6 6.1224 0.2413 0.1652 11 6 7.3748 -0.3398 0.2141 12 6 7.8359 -0.8964 1.3918 13 6 7.0454 -0.8640 2.5336 14 8 7.5015 -1.4065 3.6914 15 6 6.7328 -1.2456 4.7873 16 1 5.7635 -0.7769 4.7030 17 6 7.1867 -1.6819 6.0226 18 7 6.4369 -1.5244 7.0921 19 14 8.8631 -2.4932 6.1684 20 1 9.8931 -1.4568 6.4338 21 1 8.8445 -3.4703 7.2865 22 1 9.1842 -3.1972 4.9011 23 6 5.7868 -0.2815 2.4881 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6458 3.3430 -1.0110 32 1 3.7913 3.4463 0.7600 33 1 5.8936 2.3035 -1.1351 34 1 5.9683 3.8941 -0.3391 35 1 6.0392 2.4069 0.6359 36 1 3.5013 0.8804 2.0470 37 1 5.7633 0.6721 -0.7577 38 1 7.9931 -0.3628 -0.6711 39 1 8.8137 -1.3540 1.4255 40 1 6.7544 -1.8300 7.9563 41 1 5.1689 -0.2583 3.3736 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231288805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:26 Heat of formation + Delta-G solvation = -15.362415 kcal Electronic energy + Delta-G solvation = -19928.581003 eV Core-core repulsion = 17001.667210 eV Total energy + Delta-G solvation = -2926.913792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.46961 -38.06397 -36.07201 -33.80880 -32.42011 -32.17634 -29.41617 -28.98195 -27.19028 -25.12782 -24.02976 -21.97330 -21.54620 -21.12437 -19.72106 -17.73422 -17.61196 -15.94948 -15.65291 -15.20917 -14.71644 -14.38072 -14.23160 -13.78488 -13.67389 -13.58318 -13.12582 -12.96244 -12.42310 -12.39293 -12.18886 -12.12437 -11.93214 -11.54268 -11.36367 -11.00781 -10.97862 -10.82329 -10.75326 -10.70247 -10.51126 -10.23067 -10.10523 -9.36312 -9.35163 -8.75605 -7.40340 -6.72582 -6.34707 -4.01086 2.35314 2.52692 3.26767 3.30414 3.45854 3.82712 4.30105 4.57136 4.67548 4.91010 4.92773 4.99863 5.16903 5.19033 5.26803 5.35050 5.42736 5.59072 5.67373 5.69324 5.72969 5.81358 5.89970 5.99419 6.01113 6.08930 6.12336 6.20438 6.25661 6.30618 6.41058 6.55027 6.59955 6.65044 7.04175 7.28463 7.34410 7.59234 7.86731 7.99622 8.12260 8.26891 9.01790 9.67259 10.73345 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.004961 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.566677 B = 5642.190629 C = 6389.288137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.126 4.126 4 C 0.154 3.846 5 H 0.077 0.923 6 C -0.137 4.137 7 C -0.157 4.157 8 N -0.744 5.744 9 C 0.251 3.749 10 C -0.272 4.272 11 C -0.045 4.045 12 C -0.240 4.240 13 C 0.195 3.805 14 O -0.220 6.220 15 C -0.385 4.385 16 H 0.105 0.895 17 C 0.062 3.938 18 N -0.884 5.884 19 Si 0.904 3.096 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.292 4.292 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.394 0.606 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.278 0.722 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 6.093 -14.918 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.164 4.164 4 C 0.048 3.952 5 H 0.095 0.905 6 C -0.176 4.176 7 C -0.214 4.214 8 N -0.375 5.375 9 C 0.150 3.850 10 C -0.295 4.295 11 C -0.064 4.064 12 C -0.260 4.260 13 C 0.142 3.858 14 O -0.125 6.125 15 C -0.461 4.461 16 H 0.122 0.878 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.316 4.316 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.229 0.771 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.008 5.985 -14.805 17.439 hybrid contribution 0.299 -0.208 0.636 0.733 sum -6.709 5.777 -14.169 16.707 Atomic orbital electron populations 1.21776 0.96135 1.01539 1.01467 1.21514 0.95354 0.96594 1.02746 1.21889 0.94589 0.97426 1.02470 1.20880 0.92776 0.93333 0.88169 0.90541 1.22050 0.97086 0.97115 1.01385 1.22167 0.95406 1.00705 1.03137 1.44644 1.16164 1.64962 1.11726 1.17457 0.84425 0.89953 0.93195 1.20432 0.97206 1.14261 0.97569 1.20364 0.94773 0.95276 0.95988 1.20003 1.01328 1.12509 0.92202 1.18797 0.91122 0.89429 0.86443 1.83580 1.47238 1.66600 1.15069 1.20747 1.01157 1.40920 0.83250 0.87768 1.24454 0.99218 0.96769 0.93640 1.69653 1.37603 1.45940 0.99079 0.86196 0.82881 0.79529 0.78387 1.19969 1.20922 1.18352 1.20615 0.99302 1.13543 0.98113 0.92846 0.93046 0.92848 0.92106 0.91342 0.91642 0.91041 0.92116 0.92062 0.92555 0.93960 0.90610 0.77121 0.86770 0.87241 0.87141 0.91227 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.15 0.37 -0.97 16 2 C -0.12 -1.26 5.82 -26.74 -0.16 -1.42 16 3 C -0.13 -1.20 4.75 -26.73 -0.13 -1.33 16 4 C 0.15 1.78 2.22 -67.94 -0.15 1.63 16 5 H 0.08 0.92 6.48 -51.93 -0.34 0.58 16 6 C -0.14 -1.51 5.61 -26.74 -0.15 -1.66 16 7 C -0.16 -1.96 8.22 37.16 0.31 -1.66 16 8 N -0.74 -10.75 4.64 -52.19 -0.24 -11.00 16 9 C 0.25 4.52 5.48 -83.81 -0.46 4.06 16 10 C -0.27 -4.54 6.72 -39.33 -0.26 -4.81 16 11 C -0.05 -0.78 10.03 -39.64 -0.40 -1.18 16 12 C -0.24 -4.92 9.99 -39.35 -0.39 -5.32 16 13 C 0.19 4.62 6.64 -39.14 -0.26 4.36 16 14 O -0.22 -5.96 8.58 0.05 0.00 -5.96 16 15 C -0.38 -11.05 9.94 30.89 0.31 -10.74 16 16 H 0.11 3.06 5.43 -52.49 -0.29 2.77 16 17 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 18 N -0.88 -25.92 13.96 55.48 0.77 -25.14 16 19 Si 0.90 22.11 28.62 -169.99 -4.86 17.25 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.29 -6.38 9.01 -39.20 -0.35 -6.74 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.81 7.75 -51.92 -0.40 0.41 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.66 6.35 -51.93 -0.33 0.33 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.17 5.39 -51.93 -0.28 0.89 16 36 H 0.39 5.59 8.61 -40.82 -0.35 5.24 16 37 H 0.11 1.65 4.00 -52.49 -0.21 1.44 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.28 7.53 8.31 -40.82 -0.34 7.20 16 41 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -29.43 324.32 -7.55 -36.98 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.28 Total: 7.09 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -1.83 Total: -24.11 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.53 Total: -36.14 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: 0.00 Total: -5.96 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.86 Total: 17.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.43 -7.55 -36.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231288805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.613 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds