Wall clock time and date at job start Mon Mar 30 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 C 1.53004 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46887 * 54.99963 * 4 3 2 6 6 C 1.52995 * 109.47212 * 174.99665 * 4 3 2 7 7 C 1.52996 * 109.47211 * 185.00127 * 6 4 3 8 8 N 1.46491 * 109.47229 * 295.00012 * 4 3 2 9 9 C 1.39676 * 120.00112 * 154.99709 * 8 4 3 10 10 C 1.39000 * 120.03640 * 0.02562 * 9 8 4 11 11 C 1.38150 * 120.05976 * 180.02562 * 10 9 8 12 12 C 1.38176 * 120.14183 * 0.23408 * 11 10 9 13 13 C 1.38918 * 120.08067 * 359.48829 * 12 11 10 14 14 O 1.35749 * 120.03368 * 180.25546 * 13 12 11 15 15 C 1.34830 * 116.99830 * 174.74237 * 14 13 12 16 16 H 1.07996 * 120.00380 * 5.05514 * 15 14 13 17 17 C 1.38652 * 119.99840 * 185.05886 * 15 14 13 18 18 N 1.31558 * 119.99980 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99889 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46725 * 90.00436 * 19 17 15 21 21 H 1.48497 * 109.47080 * 209.99917 * 19 17 15 22 22 H 1.48491 * 109.47042 * 330.00332 * 19 17 15 23 23 C 1.38754 * 120.03948 * 180.02562 * 9 8 4 24 24 H 1.09006 * 109.47471 * 300.00432 * 1 2 3 25 25 H 1.08999 * 109.47092 * 60.00384 * 1 2 3 26 26 H 1.08996 * 109.47351 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47790 * 239.99918 * 2 1 3 28 28 H 1.09008 * 109.47319 * 119.99705 * 2 1 3 29 29 H 1.09006 * 109.47097 * 59.99954 * 3 2 1 30 30 H 1.09000 * 109.47261 * 299.99860 * 3 2 1 31 31 H 1.09004 * 109.47609 * 305.00360 * 6 4 3 32 32 H 1.09001 * 109.47029 * 65.00115 * 6 4 3 33 33 H 1.09001 * 109.47133 * 60.00052 * 7 6 4 34 34 H 1.09002 * 109.47412 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47237 * 300.00082 * 7 6 4 36 36 H 0.97008 * 120.00044 * 335.00031 * 8 4 3 37 37 H 1.07999 * 119.97354 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.93185 * 179.97438 * 11 10 9 39 39 H 1.08000 * 119.96133 * 179.72069 * 12 11 10 40 40 H 0.97006 * 119.99498 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.06773 * 359.95036 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0800 2.8795 -0.1252 7 6 5.6049 2.8703 -0.2499 8 7 4.0578 0.8590 1.2527 9 6 5.3242 0.2719 1.3028 10 6 6.1224 0.2413 0.1652 11 6 7.3748 -0.3398 0.2141 12 6 7.8359 -0.8964 1.3918 13 6 7.0454 -0.8640 2.5336 14 8 7.5015 -1.4065 3.6914 15 6 6.7328 -1.2456 4.7873 16 1 5.7635 -0.7769 4.7030 17 6 7.1867 -1.6819 6.0226 18 7 6.4369 -1.5244 7.0921 19 14 8.8631 -2.4932 6.1684 20 1 9.8931 -1.4568 6.4338 21 1 8.8445 -3.4703 7.2865 22 1 9.1842 -3.1972 4.9011 23 6 5.7868 -0.2815 2.4881 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6458 3.3430 -1.0110 32 1 3.7913 3.4463 0.7600 33 1 5.8936 2.3035 -1.1351 34 1 5.9683 3.8941 -0.3391 35 1 6.0392 2.4069 0.6359 36 1 3.5013 0.8804 2.0470 37 1 5.7633 0.6721 -0.7577 38 1 7.9931 -0.3628 -0.6711 39 1 8.8137 -1.3540 1.4255 40 1 6.7544 -1.8300 7.9563 41 1 5.1689 -0.2583 3.3736 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231288805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:25 Heat of formation + Delta-G solvation = -32.223384 kcal Electronic energy + Delta-G solvation = -19929.312149 eV Core-core repulsion = 17001.667210 eV Total energy + Delta-G solvation = -2927.644939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00887 -39.54369 -37.48341 -34.85353 -34.33640 -33.49800 -30.61081 -30.55252 -28.44504 -27.08284 -24.93519 -23.46479 -23.01186 -21.94224 -21.06464 -19.67332 -19.21554 -17.25402 -17.12859 -16.65580 -15.93398 -15.78304 -15.55329 -15.42109 -15.22153 -14.88546 -14.49190 -14.18529 -14.08828 -13.81180 -13.35244 -13.25324 -13.11990 -12.78383 -12.58439 -12.50788 -12.36826 -12.08646 -12.01481 -11.88269 -11.54180 -11.51179 -11.38878 -11.28330 -10.93782 -10.56310 -9.12203 -8.48005 -8.13761 -6.19794 0.78053 0.93142 1.31066 1.36227 1.52673 2.29611 2.60738 2.84037 3.18341 3.29283 3.71286 4.05679 4.07583 4.22458 4.27700 4.39366 4.49681 4.51722 4.61501 4.63886 4.71429 4.82158 4.85195 4.90885 4.97680 5.03373 5.07519 5.13644 5.17781 5.27109 5.31566 5.38284 5.46976 5.47777 5.54547 5.56636 5.79673 5.87605 5.94095 6.21956 6.67348 6.87482 6.88726 7.65915 8.63951 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.004961 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.566677 B = 5642.190629 C = 6389.288137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.118 4.118 4 C 0.151 3.849 5 H 0.082 0.918 6 C -0.133 4.133 7 C -0.158 4.158 8 N -0.738 5.738 9 C 0.259 3.741 10 C -0.252 4.252 11 C -0.033 4.033 12 C -0.254 4.254 13 C 0.156 3.844 14 O -0.248 6.248 15 C -0.394 4.394 16 H 0.078 0.922 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.264 1.264 23 C -0.315 4.315 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.393 0.607 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.117 0.883 40 H 0.283 0.717 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.164 7.125 -18.457 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.156 4.156 4 C 0.046 3.954 5 H 0.100 0.900 6 C -0.172 4.172 7 C -0.215 4.215 8 N -0.366 5.366 9 C 0.155 3.845 10 C -0.274 4.274 11 C -0.051 4.051 12 C -0.275 4.275 13 C 0.107 3.893 14 O -0.156 6.156 15 C -0.471 4.471 16 H 0.095 0.905 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.339 4.339 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.227 0.773 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.057 7.052 -18.391 20.923 hybrid contribution 0.125 -0.357 1.431 1.480 sum -6.932 6.695 -16.960 19.507 Atomic orbital electron populations 1.21754 0.95027 1.01708 1.02199 1.21498 0.96384 0.96850 1.01520 1.21858 0.92848 0.97147 1.03743 1.21159 0.94229 0.93621 0.86391 0.90033 1.22027 0.96220 0.96441 1.02504 1.22134 0.96238 1.01248 1.01869 1.44869 1.14773 1.63816 1.13168 1.17535 0.85834 0.88895 0.92248 1.20875 0.96467 1.12072 0.97975 1.20865 0.95180 0.92958 0.96108 1.20272 1.01557 1.13427 0.92202 1.19391 0.92560 0.90926 0.86450 1.83518 1.47508 1.68999 1.15531 1.20681 1.00713 1.41064 0.84619 0.90494 1.25273 1.03039 0.97517 0.93122 1.69738 1.39516 1.47825 0.99697 0.85219 0.78259 0.78850 0.78384 1.19101 1.19137 1.18835 1.20564 0.99042 1.15426 0.98863 0.92940 0.91451 0.93060 0.91971 0.93933 0.91660 0.88388 0.89083 0.92795 0.91302 0.93022 0.94021 0.77274 0.83263 0.82769 0.86457 0.90712 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.12 -2.30 5.82 30.59 0.18 -2.12 16 3 C -0.12 -1.89 4.75 30.60 0.15 -1.75 16 4 C 0.15 3.00 2.22 44.99 0.10 3.10 16 5 H 0.08 1.60 6.48 -2.39 -0.02 1.58 16 6 C -0.13 -2.45 5.61 30.59 0.17 -2.27 16 7 C -0.16 -3.40 8.22 71.98 0.59 -2.80 16 8 N -0.74 -20.74 4.64 -319.03 -1.48 -22.22 16 9 C 0.26 9.21 5.48 38.20 0.21 9.42 16 10 C -0.25 -7.66 6.72 22.43 0.15 -7.50 16 11 C -0.03 -1.03 10.03 22.23 0.22 -0.81 16 12 C -0.25 -10.29 9.99 22.42 0.22 -10.07 16 13 C 0.16 7.72 6.64 22.56 0.15 7.87 16 14 O -0.25 -14.15 8.58 -22.73 -0.20 -14.35 16 15 C -0.39 -24.16 9.94 67.92 0.68 -23.49 16 16 H 0.08 4.96 5.43 -2.91 -0.02 4.95 16 17 C 0.01 0.49 5.49 84.83 0.47 0.95 16 18 N -0.93 -56.82 13.96 21.61 0.30 -56.52 16 19 Si 0.97 47.02 28.62 68.60 1.96 48.98 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 23 C -0.31 -14.50 9.01 22.52 0.20 -14.30 16 24 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 28 H 0.04 0.99 7.75 -2.38 -0.02 0.98 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.29 6.35 -2.39 -0.02 1.27 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 1.18 5.39 -2.38 -0.01 1.17 16 36 H 0.39 11.37 8.61 -92.70 -0.80 10.57 16 37 H 0.15 3.55 4.00 -2.91 -0.01 3.54 16 38 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 39 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.28 15.93 8.31 -92.70 -0.77 15.16 16 41 H 0.10 5.07 5.64 -2.91 -0.02 5.06 16 Total: -1.00 -68.35 324.32 5.02 -63.34 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.22 Total: 26.16 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 4.20 Total: -45.39 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.18 Total: -78.74 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.20 Total: -14.35 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.96 Total: 48.98 kcal Total: -68.35 5.02 -63.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231288805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.114 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds