Wall clock time and date at job start Mon Mar 30 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 H 1.08995 * 109.46893 * 304.99957 * 3 2 1 5 5 O 1.42906 * 109.47023 * 65.00099 * 3 2 1 6 6 C 1.50702 * 109.46962 * 184.99634 * 3 2 1 7 7 C 1.38288 * 119.91916 * 100.00255 * 6 3 2 8 8 C 1.38103 * 120.06977 * 180.02562 * 7 6 3 9 9 C 1.38912 * 119.92671 * 359.97438 * 8 7 6 10 10 N 1.39678 * 120.07226 * 179.97438 * 9 8 7 11 11 C 1.46498 * 120.00013 * 185.83857 * 10 9 8 12 12 C 1.46504 * 120.00122 * 5.84632 * 10 9 8 13 13 H 1.09002 * 109.47043 * 6.12938 * 12 10 9 14 14 C 1.52995 * 109.47059 * 126.12917 * 12 10 9 15 15 C 1.50700 * 109.46628 * 246.12817 * 12 10 9 16 16 H 1.07995 * 120.00354 * 333.10457 * 15 12 10 17 17 C 1.37880 * 119.99717 * 153.10473 * 15 12 10 18 18 N 1.31517 * 120.00042 * 183.83137 * 17 15 12 19 19 Si 1.86804 * 120.00032 * 3.83396 * 17 15 12 20 20 H 1.48505 * 109.46912 * 264.94518 * 19 17 15 21 21 H 1.48496 * 109.46979 * 24.94036 * 19 17 15 22 22 H 1.48494 * 109.47278 * 144.94045 * 19 17 15 23 23 C 1.38903 * 119.85037 * 0.25452 * 9 8 7 24 24 C 1.38107 * 119.92699 * 359.48651 * 23 9 8 25 25 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47136 * 299.99756 * 1 2 3 27 27 H 1.08992 * 109.47344 * 60.00122 * 1 2 3 28 28 H 1.08997 * 109.47509 * 239.99602 * 2 1 3 29 29 H 1.09007 * 109.46967 * 119.99550 * 2 1 3 30 30 H 0.96699 * 114.00004 * 59.99872 * 5 3 2 31 31 H 1.08002 * 119.96575 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.03843 * 179.97438 * 8 7 6 33 33 H 1.08997 * 109.47367 * 270.00699 * 11 10 9 34 34 H 1.09003 * 109.46854 * 30.00452 * 11 10 9 35 35 H 1.09000 * 109.47348 * 150.00033 * 11 10 9 36 36 H 1.08997 * 109.47679 * 294.89363 * 14 12 10 37 37 H 1.09007 * 109.47285 * 54.89359 * 14 12 10 38 38 H 1.09004 * 109.47405 * 174.89251 * 14 12 10 39 39 H 0.96999 * 119.99725 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.03766 * 179.73176 * 23 9 8 41 41 H 1.07995 * 119.96640 * 180.24971 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5419 1.4443 -0.1237 7 6 4.1327 1.6875 -1.3502 8 6 5.5087 1.6893 -1.4673 9 6 6.2995 1.4470 -0.3512 10 7 7.6915 1.4476 -0.4662 11 6 8.5214 1.0669 0.6795 12 6 8.3218 1.8292 -1.7325 13 1 7.5587 2.1816 -2.4265 14 6 9.3370 2.9457 -1.4808 15 6 9.0251 0.6345 -2.3235 16 1 9.3874 -0.1523 -1.6787 17 6 9.2060 0.5462 -3.6875 18 7 9.7519 -0.5302 -4.2101 19 14 8.6757 1.9553 -4.7933 20 1 7.3112 1.6885 -5.3151 21 1 8.6694 3.2199 -4.0149 22 1 9.6248 2.0777 -5.9287 23 6 5.7027 1.1984 0.8782 24 6 4.3261 1.2034 0.9894 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0141 1.6542 2.0139 31 1 3.5173 1.8753 -2.2176 32 1 5.9696 1.8788 -2.4255 33 1 8.7521 1.9526 1.2713 34 1 7.9815 0.3483 1.2962 35 1 9.4478 0.6163 0.3233 36 1 8.8162 3.8401 -1.1389 37 1 10.0479 2.6256 -0.7190 38 1 9.8704 3.1671 -2.4053 39 1 9.8794 -0.5922 -5.1697 40 1 6.3146 1.0054 1.7470 41 1 3.8615 1.0141 1.9458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233905961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:03 Heat of formation + Delta-G solvation = -45.476688 kcal Electronic energy + Delta-G solvation = -20017.665166 eV Core-core repulsion = 17089.445521 eV Total energy + Delta-G solvation = -2928.219645 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77463 -38.96373 -37.10354 -34.76031 -33.64850 -32.60222 -31.68499 -30.50780 -27.67889 -27.18224 -25.79665 -23.70386 -22.64076 -22.21534 -20.70674 -19.26649 -18.41049 -17.43065 -16.94014 -16.54378 -16.10172 -15.79738 -15.44677 -15.05426 -14.81057 -14.51827 -14.37214 -14.12404 -13.81444 -13.73216 -13.45309 -13.24021 -13.13127 -12.87506 -12.82994 -12.67121 -12.53487 -12.28514 -11.80810 -11.75586 -11.67313 -11.59324 -11.22035 -10.83294 -10.80381 -10.31494 -9.74820 -8.35004 -7.91685 -6.39359 0.62771 0.76932 1.28963 1.32728 1.42116 2.28312 2.48666 2.99980 3.06492 3.68600 3.82779 3.97841 4.12516 4.19591 4.23686 4.37214 4.46502 4.57086 4.58677 4.65568 4.71420 4.73343 4.81269 4.86093 4.93171 4.96988 5.00563 5.09021 5.17892 5.18632 5.29597 5.39294 5.45689 5.53510 5.58450 5.61512 5.83769 6.04084 6.20810 6.59050 6.69835 6.89382 6.89884 7.27706 8.81875 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.005105 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.169536 B = 5482.989293 C = 6017.983286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 C 0.166 3.834 4 H 0.097 0.903 5 O -0.568 6.568 6 C -0.195 4.195 7 C -0.067 4.067 8 C -0.227 4.227 9 C 0.211 3.789 10 N -0.619 5.619 11 C 0.101 3.899 12 C 0.239 3.761 13 H 0.045 0.955 14 C -0.147 4.147 15 C -0.524 4.524 16 H 0.035 0.965 17 C 0.020 3.980 18 N -0.944 5.944 19 Si 0.924 3.076 20 H -0.273 1.273 21 H -0.231 1.231 22 H -0.281 1.281 23 C -0.213 4.213 24 C -0.058 4.058 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.384 0.616 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.267 0.733 40 H 0.134 0.866 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 4.852 10.603 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.115 0.885 5 O -0.376 6.376 6 C -0.197 4.197 7 C -0.086 4.086 8 C -0.249 4.249 9 C 0.106 3.894 10 N -0.326 5.326 11 C -0.042 4.042 12 C 0.136 3.864 13 H 0.063 0.937 14 C -0.206 4.206 15 C -0.562 4.562 16 H 0.053 0.947 17 C -0.178 4.178 18 N -0.584 5.584 19 Si 0.747 3.253 20 H -0.198 1.198 21 H -0.154 1.154 22 H -0.207 1.207 23 C -0.236 4.236 24 C -0.077 4.077 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.147 0.853 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.152 0.848 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.390 5.171 10.028 18.286 hybrid contribution 0.924 -0.424 -0.832 1.314 sum -13.466 4.747 9.196 16.983 Atomic orbital electron populations 1.21700 0.94472 1.01858 1.02243 1.22195 0.97107 0.96185 1.03030 1.20588 0.87934 0.93193 0.87556 0.88467 1.86551 1.76730 1.58063 1.16221 1.20361 0.97000 1.08491 0.93887 1.20841 0.93095 0.96857 0.97808 1.20808 0.94662 1.11959 0.97500 1.18290 0.83739 0.92913 0.94443 1.46921 1.02016 1.70880 1.12770 1.21513 0.95097 0.99634 0.87979 1.18996 0.91825 0.92689 0.82904 0.93693 1.22237 0.99527 0.97522 1.01278 1.21480 1.36829 1.05576 0.92352 0.94711 1.25758 0.94769 0.97869 0.99443 1.70046 1.46134 1.29495 1.12706 0.86127 0.78513 0.81596 0.79036 1.19825 1.15413 1.20701 1.20798 0.95791 1.11218 0.95747 1.20807 0.92223 0.96071 0.98569 0.92155 0.92102 0.92834 0.91764 0.90968 0.76651 0.85292 0.88134 0.92367 0.91041 0.93020 0.93381 0.92679 0.92988 0.92438 0.84844 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.81 71.98 0.71 -1.62 16 2 C -0.15 -2.74 5.59 30.59 0.17 -2.56 16 3 C 0.17 3.56 3.20 29.85 0.10 3.66 16 4 H 0.10 2.11 8.00 -2.39 -0.02 2.09 16 5 O -0.57 -11.66 12.72 -148.98 -1.90 -13.56 16 6 C -0.19 -5.21 4.98 -19.84 -0.10 -5.31 16 7 C -0.07 -2.12 9.66 22.25 0.21 -1.91 16 8 C -0.23 -8.71 9.26 22.40 0.21 -8.50 16 9 C 0.21 8.04 6.54 38.21 0.25 8.29 16 10 N -0.62 -25.30 2.89 -702.27 -2.03 -27.32 16 11 C 0.10 3.46 8.77 127.77 1.12 4.58 16 12 C 0.24 10.95 2.07 44.24 0.09 11.04 16 13 H 0.05 2.11 3.35 -2.39 -0.01 2.10 16 14 C -0.15 -5.92 8.67 71.98 0.62 -5.30 16 15 C -0.52 -29.12 8.75 25.60 0.22 -28.90 16 16 H 0.03 2.16 7.30 -2.91 -0.02 2.14 16 17 C 0.02 1.13 5.47 84.66 0.46 1.59 16 18 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 19 Si 0.92 42.58 26.19 68.60 1.80 44.38 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.23 -9.63 5.66 99.48 0.56 -9.07 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 C -0.21 -6.54 9.16 22.40 0.21 -6.33 16 24 C -0.06 -1.49 9.31 22.25 0.21 -1.28 16 25 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.06 0.96 7.82 -2.39 -0.02 0.94 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.38 5.27 7.50 -74.06 -0.56 4.72 16 31 H 0.13 3.51 8.03 -2.91 -0.02 3.48 16 32 H 0.10 4.23 5.85 -2.91 -0.02 4.22 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.15 6.45 -2.39 -0.02 2.13 16 35 H 0.05 1.97 7.01 -2.39 -0.02 1.95 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.05 2.11 7.31 -2.38 -0.02 2.09 16 38 H 0.05 2.12 6.26 -2.39 -0.01 2.11 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.13 3.56 6.30 -2.91 -0.02 3.54 16 41 H 0.15 2.57 6.78 -2.91 -0.02 2.55 16 Total: -1.00 -66.46 321.99 2.98 -63.48 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.33 Total: 23.41 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 4.48 Total: -32.55 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.73 Total: -85.16 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.90 Total: -13.56 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.80 Total: 44.38 kcal Total: -66.46 2.98 -63.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233905961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.005 kcal (2) G-P(sol) polarization free energy of solvation -66.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds