Wall clock time and date at job start Mon Mar 30 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47338 * 2 1 4 4 H 1.08999 * 109.47269 * 305.00414 * 3 2 1 5 5 O 1.42903 * 109.46459 * 65.00307 * 3 2 1 6 6 C 1.50696 * 109.47222 * 184.99973 * 3 2 1 7 7 C 1.38288 * 119.92746 * 279.73015 * 6 3 2 8 8 C 1.38106 * 120.07266 * 179.73014 * 7 6 3 9 9 C 1.38909 * 119.92357 * 0.53883 * 8 7 6 10 10 N 1.39672 * 120.07060 * 179.70663 * 9 8 7 11 11 C 1.46504 * 120.00014 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47262 * 89.99927 * 11 10 9 13 13 C 1.46496 * 120.00228 * 0.02677 * 10 9 8 14 14 C 1.50702 * 109.46984 * 89.99907 * 13 10 9 15 15 H 1.07993 * 119.99829 * 0.02562 * 14 13 10 16 16 C 1.37883 * 119.99667 * 179.97438 * 14 13 10 17 17 N 1.31506 * 120.00254 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99524 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47064 * 90.00567 * 18 16 14 20 20 H 1.48499 * 109.46757 * 210.00309 * 18 16 14 21 21 H 1.48496 * 109.47367 * 329.99952 * 18 16 14 22 22 C 1.38914 * 119.85238 * 359.73564 * 9 8 7 23 23 C 1.38098 * 119.92307 * 359.97438 * 22 9 8 24 24 H 1.08999 * 109.47130 * 59.99742 * 1 2 3 25 25 H 1.08999 * 109.46960 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46490 * 299.99775 * 1 2 3 27 27 H 1.09005 * 109.46934 * 240.00522 * 2 1 3 28 28 H 1.08999 * 109.47130 * 120.00258 * 2 1 3 29 29 H 0.96700 * 114.00311 * 60.00313 * 5 3 2 30 30 H 1.07998 * 119.95754 * 359.97438 * 7 6 3 31 31 H 1.07995 * 120.03326 * 180.27344 * 8 7 6 32 32 H 1.08996 * 109.47171 * 210.00439 * 11 10 9 33 33 H 1.09012 * 109.46921 * 329.99801 * 11 10 9 34 34 H 1.09005 * 109.47134 * 299.99837 * 12 11 10 35 35 H 1.08995 * 109.47120 * 60.00282 * 12 11 10 36 36 H 1.09007 * 109.46801 * 180.02562 * 12 11 10 37 37 H 1.09006 * 109.47092 * 209.99432 * 13 10 9 38 38 H 1.08998 * 109.47152 * 329.99608 * 13 10 9 39 39 H 0.97000 * 120.00538 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.03650 * 179.97438 * 22 9 8 41 41 H 1.08005 * 119.96203 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0813 1.2212 6 6 3.5419 1.4443 -0.1238 7 6 4.3263 1.2083 0.9904 8 6 5.7029 1.2037 0.8792 9 6 6.2996 1.4476 -0.3513 10 7 7.6916 1.4497 -0.4660 11 6 8.3192 1.7077 -1.7644 12 6 8.5595 3.2101 -1.9252 13 6 8.5240 1.1941 0.7121 14 6 8.7880 -0.2850 0.8292 15 1 8.3771 -0.9663 0.0989 16 6 9.5549 -0.7683 1.8682 17 7 10.0556 0.0614 2.7571 18 14 9.8826 -2.6016 2.0129 19 1 11.1212 -2.9434 1.2683 20 1 10.0495 -2.9632 3.4435 21 1 8.7378 -3.3558 1.4421 22 6 5.5087 1.6899 -1.4673 23 6 4.1327 1.6871 -1.3503 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.0143 1.6541 2.0140 30 1 3.8618 1.0235 1.9476 31 1 6.3148 1.0150 1.7488 32 1 9.2711 1.1795 -1.8191 33 1 7.6630 1.3572 -2.5612 34 1 7.6075 3.7382 -1.8706 35 1 9.2157 3.5604 -1.1286 36 1 9.0261 3.4019 -2.8915 37 1 9.4706 1.7251 0.6103 38 1 8.0061 1.5426 1.6056 39 1 10.5949 -0.2785 3.4883 40 1 5.9695 1.8803 -2.4254 41 1 3.5172 1.8750 -2.2177 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233906580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:47 Heat of formation + Delta-G solvation = -37.225975 kcal Electronic energy + Delta-G solvation = -19868.424761 eV Core-core repulsion = 16940.562894 eV Total energy + Delta-G solvation = -2927.861868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.39936 -37.62773 -35.47242 -32.89308 -32.72088 -31.11668 -30.13599 -29.20915 -26.81352 -25.00789 -23.49889 -22.36681 -21.59261 -21.07649 -19.46159 -17.26117 -16.50407 -16.02821 -15.73221 -15.04436 -14.93986 -14.36643 -14.20131 -13.69400 -13.26519 -13.09042 -12.93483 -12.63060 -12.54756 -12.31399 -12.05381 -11.94220 -11.62736 -11.53615 -11.24914 -10.98805 -10.95320 -10.76724 -10.67890 -10.55160 -10.30517 -9.90378 -9.82979 -9.67305 -8.83343 -8.53371 -8.33291 -6.50127 -6.04619 -4.20085 2.04890 2.17494 3.23815 3.30937 3.35086 4.06673 4.35707 4.39725 4.69345 4.90459 5.11110 5.15717 5.19039 5.35160 5.44547 5.50643 5.60990 5.66920 5.74653 5.79747 5.81782 5.95270 5.97532 6.10183 6.12657 6.25317 6.26079 6.37587 6.43173 6.57815 6.59770 6.91448 6.98896 7.13569 7.20097 7.31999 7.53844 7.76779 7.78407 8.13106 8.24804 8.46379 8.89089 9.46896 10.93053 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017405 B = 0.005368 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.320801 B = 5214.732490 C = 6224.744710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.151 4.151 3 C 0.161 3.839 4 H 0.095 0.905 5 O -0.562 6.562 6 C -0.205 4.205 7 C -0.065 4.065 8 C -0.185 4.185 9 C 0.243 3.757 10 N -0.609 5.609 11 C 0.120 3.880 12 C -0.169 4.169 13 C 0.250 3.750 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.218 4.218 23 C -0.065 4.065 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.372 0.628 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.114 0.886 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 2.552 -6.678 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.103 3.897 4 H 0.113 0.887 5 O -0.368 6.368 6 C -0.208 4.208 7 C -0.084 4.084 8 C -0.207 4.207 9 C 0.136 3.864 10 N -0.314 5.314 11 C -0.004 4.004 12 C -0.227 4.227 13 C 0.130 3.870 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.242 4.242 23 C -0.084 4.084 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.219 0.781 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.791 2.954 -6.928 13.991 hybrid contribution 0.762 -1.506 0.479 1.755 sum -11.029 1.448 -6.449 12.858 Atomic orbital electron populations 1.21729 0.95666 1.01100 1.02063 1.22251 0.96078 0.97563 1.03039 1.20607 0.89999 0.92009 0.87122 0.88735 1.86534 1.76706 1.57736 1.15848 1.19959 0.95239 1.10962 0.94628 1.20462 0.93182 0.97821 0.96971 1.20855 0.94402 1.07932 0.97510 1.17952 0.84178 0.90994 0.93296 1.47219 1.01875 1.72565 1.09693 1.21242 0.98413 0.94898 0.85842 1.22222 1.01670 0.97717 1.01125 1.19270 0.89570 0.95966 0.82213 1.21577 1.31854 0.92758 1.10863 0.92283 1.24954 0.95516 0.98076 0.95449 1.69923 1.34569 1.34533 1.14324 0.86533 0.78665 0.85205 0.77292 1.20613 1.21081 1.19840 1.20558 0.93440 1.12592 0.97563 1.20463 0.93907 0.98015 0.96021 0.92994 0.93137 0.92256 0.91078 0.91640 0.78075 0.87429 0.84986 0.90701 0.91997 0.92875 0.92437 0.92641 0.95198 0.94715 0.92633 0.86774 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.81 37.16 0.36 -1.10 16 2 C -0.15 -1.72 5.59 -26.73 -0.15 -1.87 16 3 C 0.16 2.07 3.21 -27.88 -0.09 1.98 16 4 H 0.09 1.17 8.00 -51.93 -0.42 0.75 16 5 O -0.56 -7.43 12.72 -35.23 -0.45 -7.88 16 6 C -0.21 -3.15 4.98 -104.59 -0.52 -3.67 16 7 C -0.07 -1.09 9.31 -39.61 -0.37 -1.46 16 8 C -0.18 -3.67 9.21 -39.38 -0.36 -4.03 16 9 C 0.24 4.83 6.55 -83.79 -0.55 4.29 16 10 N -0.61 -12.70 2.59 -173.12 -0.45 -13.15 16 11 C 0.12 2.09 5.88 -4.04 -0.02 2.06 16 12 C -0.17 -2.53 10.24 37.16 0.38 -2.15 16 13 C 0.25 6.15 4.91 -5.19 -0.03 6.12 16 14 C -0.53 -14.30 9.39 -34.44 -0.32 -14.62 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 18 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 C -0.22 -3.75 9.21 -39.38 -0.36 -4.12 16 23 C -0.07 -1.01 9.66 -39.62 -0.38 -1.39 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.37 3.97 7.49 45.56 0.34 4.31 16 30 H 0.11 1.52 6.77 -52.49 -0.36 1.17 16 31 H 0.13 2.90 6.14 -52.49 -0.32 2.57 16 32 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.97 6.20 -51.92 -0.32 0.65 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.03 0.91 6.20 -51.93 -0.32 0.59 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.11 1.78 6.14 -52.49 -0.32 1.45 16 41 H 0.11 1.39 8.03 -52.48 -0.42 0.97 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -28.90 334.90 -8.53 -37.44 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.89 Total: 5.49 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.51 Total: -18.36 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.29 Total: -37.79 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.45 Total: -7.88 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.90 -8.53 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233906580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.211 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds