Wall clock time and date at job start Mon Mar 30 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47338 * 2 1 4 4 H 1.08999 * 109.47269 * 305.00414 * 3 2 1 5 5 O 1.42903 * 109.46459 * 65.00307 * 3 2 1 6 6 C 1.50696 * 109.47222 * 184.99973 * 3 2 1 7 7 C 1.38288 * 119.92746 * 279.73015 * 6 3 2 8 8 C 1.38106 * 120.07266 * 179.73014 * 7 6 3 9 9 C 1.38909 * 119.92357 * 0.53883 * 8 7 6 10 10 N 1.39672 * 120.07060 * 179.70663 * 9 8 7 11 11 C 1.46504 * 120.00014 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47262 * 89.99927 * 11 10 9 13 13 C 1.46496 * 120.00228 * 0.02677 * 10 9 8 14 14 C 1.50702 * 109.46984 * 89.99907 * 13 10 9 15 15 H 1.07993 * 119.99829 * 0.02562 * 14 13 10 16 16 C 1.37883 * 119.99667 * 179.97438 * 14 13 10 17 17 N 1.31506 * 120.00254 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99524 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47064 * 90.00567 * 18 16 14 20 20 H 1.48499 * 109.46757 * 210.00309 * 18 16 14 21 21 H 1.48496 * 109.47367 * 329.99952 * 18 16 14 22 22 C 1.38914 * 119.85238 * 359.73564 * 9 8 7 23 23 C 1.38098 * 119.92307 * 359.97438 * 22 9 8 24 24 H 1.08999 * 109.47130 * 59.99742 * 1 2 3 25 25 H 1.08999 * 109.46960 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46490 * 299.99775 * 1 2 3 27 27 H 1.09005 * 109.46934 * 240.00522 * 2 1 3 28 28 H 1.08999 * 109.47130 * 120.00258 * 2 1 3 29 29 H 0.96700 * 114.00311 * 60.00313 * 5 3 2 30 30 H 1.07998 * 119.95754 * 359.97438 * 7 6 3 31 31 H 1.07995 * 120.03326 * 180.27344 * 8 7 6 32 32 H 1.08996 * 109.47171 * 210.00439 * 11 10 9 33 33 H 1.09012 * 109.46921 * 329.99801 * 11 10 9 34 34 H 1.09005 * 109.47134 * 299.99837 * 12 11 10 35 35 H 1.08995 * 109.47120 * 60.00282 * 12 11 10 36 36 H 1.09007 * 109.46801 * 180.02562 * 12 11 10 37 37 H 1.09006 * 109.47092 * 209.99432 * 13 10 9 38 38 H 1.08998 * 109.47152 * 329.99608 * 13 10 9 39 39 H 0.97000 * 120.00538 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.03650 * 179.97438 * 22 9 8 41 41 H 1.08005 * 119.96203 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0813 1.2212 6 6 3.5419 1.4443 -0.1238 7 6 4.3263 1.2083 0.9904 8 6 5.7029 1.2037 0.8792 9 6 6.2996 1.4476 -0.3513 10 7 7.6916 1.4497 -0.4660 11 6 8.3192 1.7077 -1.7644 12 6 8.5595 3.2101 -1.9252 13 6 8.5240 1.1941 0.7121 14 6 8.7880 -0.2850 0.8292 15 1 8.3771 -0.9663 0.0989 16 6 9.5549 -0.7683 1.8682 17 7 10.0556 0.0614 2.7571 18 14 9.8826 -2.6016 2.0129 19 1 11.1212 -2.9434 1.2683 20 1 10.0495 -2.9632 3.4435 21 1 8.7378 -3.3558 1.4421 22 6 5.5087 1.6899 -1.4673 23 6 4.1327 1.6871 -1.3503 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.0143 1.6541 2.0140 30 1 3.8618 1.0235 1.9476 31 1 6.3148 1.0150 1.7488 32 1 9.2711 1.1795 -1.8191 33 1 7.6630 1.3572 -2.5612 34 1 7.6075 3.7382 -1.8706 35 1 9.2157 3.5604 -1.1286 36 1 9.0261 3.4019 -2.8915 37 1 9.4706 1.7251 0.6103 38 1 8.0061 1.5426 1.6056 39 1 10.5949 -0.2785 3.4883 40 1 5.9695 1.8803 -2.4254 41 1 3.5172 1.8750 -2.2177 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233906580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:47 Heat of formation + Delta-G solvation = -53.613898 kcal Electronic energy + Delta-G solvation = -19869.135395 eV Core-core repulsion = 16940.562894 eV Total energy + Delta-G solvation = -2928.572501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72428 -38.86899 -36.84655 -34.89208 -33.66341 -32.50856 -31.47489 -30.74273 -28.45023 -26.25073 -25.19953 -23.65352 -22.93530 -22.25306 -20.86793 -18.68265 -18.47789 -17.29874 -17.11947 -16.44824 -16.18276 -15.85885 -15.53568 -15.12997 -14.68748 -14.48656 -14.14876 -14.00692 -13.80804 -13.52943 -13.49007 -13.26282 -13.00249 -12.81441 -12.76895 -12.66344 -12.49347 -12.21805 -11.95236 -11.80312 -11.77052 -11.65226 -11.35473 -10.84501 -10.64545 -10.34014 -9.69751 -8.36520 -7.80548 -6.37819 0.67720 0.81887 1.36217 1.37266 1.48173 2.33213 2.59483 3.05047 3.06343 3.68925 3.86617 4.02079 4.11805 4.18433 4.26232 4.30009 4.43222 4.54147 4.59179 4.63502 4.75421 4.81199 4.87154 4.95884 5.00938 5.03586 5.09408 5.16492 5.18325 5.28218 5.32782 5.37388 5.46556 5.58686 5.65978 5.69714 5.87314 6.07297 6.17570 6.50741 6.83213 6.84441 6.94643 7.34317 8.82962 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017405 B = 0.005368 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.320801 B = 5214.732490 C = 6224.744710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.148 4.148 3 C 0.166 3.834 4 H 0.108 0.892 5 O -0.572 6.572 6 C -0.196 4.196 7 C -0.067 4.067 8 C -0.216 4.216 9 C 0.214 3.786 10 N -0.622 5.622 11 C 0.117 3.883 12 C -0.157 4.157 13 C 0.269 3.731 14 C -0.541 4.541 15 H 0.049 0.951 16 C 0.014 3.986 17 N -0.927 5.927 18 Si 0.961 3.039 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.272 1.272 22 C -0.215 4.215 23 C -0.063 4.063 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.381 0.619 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.036 0.964 36 H 0.087 0.913 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.267 0.733 40 H 0.133 0.867 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.913 2.045 -8.455 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.186 4.186 3 C 0.107 3.893 4 H 0.126 0.874 5 O -0.379 6.379 6 C -0.198 4.198 7 C -0.086 4.086 8 C -0.238 4.238 9 C 0.109 3.891 10 N -0.329 5.329 11 C -0.006 4.006 12 C -0.216 4.216 13 C 0.147 3.853 14 C -0.580 4.580 15 H 0.067 0.933 16 C -0.185 4.185 17 N -0.566 5.566 18 Si 0.786 3.214 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.237 4.237 23 C -0.081 4.081 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.230 0.770 30 H 0.145 0.855 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.025 0.975 38 H 0.027 0.973 39 H 0.076 0.924 40 H 0.151 0.849 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.868 2.455 -8.722 16.566 hybrid contribution 1.275 -1.308 1.027 2.096 sum -12.593 1.147 -7.696 14.802 Atomic orbital electron populations 1.21695 0.94327 1.01838 1.02309 1.22203 0.97189 0.96319 1.02886 1.20675 0.87917 0.93178 0.87532 0.87405 1.86519 1.76743 1.58255 1.16430 1.20364 0.96831 1.08607 0.94024 1.20681 0.91993 0.97186 0.98739 1.20771 0.95687 1.10605 0.96782 1.18235 0.83865 0.92624 0.94334 1.47066 1.02249 1.74081 1.09545 1.21418 0.97994 0.96412 0.84823 1.22119 1.01577 0.95782 1.02108 1.18720 0.88785 0.94508 0.83255 1.21776 1.31737 0.93738 1.10707 0.93277 1.25763 0.95240 1.02503 0.95037 1.70033 1.35224 1.36499 1.14890 0.85512 0.78634 0.79784 0.77487 1.19628 1.20449 1.19688 1.20796 0.94076 1.11616 0.97240 1.20917 0.93529 0.96369 0.97309 0.92182 0.92208 0.92579 0.91002 0.92100 0.76955 0.85488 0.88583 0.92152 0.89800 0.92665 0.94458 0.89407 0.97493 0.97342 0.92410 0.84887 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.81 71.98 0.71 -1.71 16 2 C -0.15 -2.94 5.59 30.60 0.17 -2.77 16 3 C 0.17 3.74 3.21 29.85 0.10 3.84 16 4 H 0.11 2.21 8.00 -2.39 -0.02 2.19 16 5 O -0.57 -13.68 12.72 -148.98 -1.90 -15.57 16 6 C -0.20 -5.56 4.98 -19.84 -0.10 -5.65 16 7 C -0.07 -2.23 9.31 22.25 0.21 -2.02 16 8 C -0.22 -8.94 9.21 22.40 0.21 -8.73 16 9 C 0.21 8.67 6.55 38.21 0.25 8.92 16 10 N -0.62 -26.91 2.59 -701.62 -1.82 -28.73 16 11 C 0.12 4.05 5.88 86.38 0.51 4.55 16 12 C -0.16 -4.61 10.24 71.98 0.74 -3.87 16 13 C 0.27 14.11 4.91 85.63 0.42 14.53 16 14 C -0.54 -30.30 9.39 25.60 0.24 -30.06 16 15 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 16 C 0.01 0.77 5.46 84.66 0.46 1.24 16 17 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 18 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 C -0.21 -6.99 9.21 22.40 0.21 -6.78 16 23 C -0.06 -1.75 9.66 22.25 0.21 -1.53 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.98 7.82 -2.38 -0.02 0.96 16 27 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.38 7.38 7.49 -74.06 -0.55 6.83 16 30 H 0.13 3.54 6.77 -2.91 -0.02 3.52 16 31 H 0.10 4.60 6.14 -2.91 -0.02 4.58 16 32 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 33 H 0.08 2.50 6.20 -2.38 -0.01 2.49 16 34 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.01 0.39 8.07 -2.38 -0.02 0.37 16 38 H 0.01 0.49 6.20 -2.39 -0.01 0.48 16 39 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.13 3.75 6.14 -2.91 -0.02 3.74 16 41 H 0.15 3.00 8.03 -2.91 -0.02 2.98 16 Total: -1.00 -64.15 334.90 3.38 -60.77 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.45 Total: 21.72 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.33 Total: -30.06 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.53 Total: -82.82 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.90 Total: -15.57 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -64.15 3.38 -60.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233906580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.157 kcal (2) G-P(sol) polarization free energy of solvation -64.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds