Wall clock time and date at job start Mon Mar 30 2020 07:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.52750 * 2 1 4 4 C 1.53121 * 109.52187 * 120.12486 * 2 1 3 5 5 C 1.53040 * 109.27773 * 177.62151 * 4 2 1 6 6 N 1.46849 * 109.52377 * 300.81908 * 5 4 2 7 7 C 1.46896 * 110.99866 * 185.83550 * 6 5 4 8 8 C 1.53002 * 109.46899 * 66.05154 * 7 6 5 9 9 C 1.50703 * 109.47207 * 179.97438 * 8 7 6 10 10 H 1.07994 * 119.99603 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99838 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00380 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99848 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99776 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99769 * 13 11 9 17 17 C 1.46854 * 111.19400 * 61.74338 * 6 5 4 18 18 H 1.09000 * 109.45867 * 58.27343 * 17 6 5 19 19 C 1.50701 * 109.45914 * 178.24046 * 17 6 5 20 20 C 1.34515 * 125.79027 * 219.71659 * 19 17 6 21 21 C 1.41374 * 106.84225 * 179.89235 * 20 19 17 22 22 C 1.34515 * 106.84182 * 0.36845 * 21 20 19 23 23 O 1.34302 * 108.42054 * 359.77306 * 22 21 20 24 24 C 1.53030 * 109.52116 * 298.25452 * 17 6 5 25 25 H 1.09005 * 109.47107 * 299.87424 * 1 2 3 26 26 H 1.08997 * 109.47397 * 59.87558 * 1 2 3 27 27 H 1.09005 * 109.47307 * 179.87675 * 1 2 3 28 28 H 1.08998 * 109.50457 * 57.68432 * 4 2 1 29 29 H 1.09001 * 109.53738 * 297.58504 * 4 2 1 30 30 H 1.08998 * 109.46235 * 180.80556 * 5 4 2 31 31 H 1.08994 * 109.46222 * 60.83744 * 5 4 2 32 32 H 1.08993 * 109.47625 * 306.04997 * 7 6 5 33 33 H 1.09006 * 109.47099 * 186.04477 * 7 6 5 34 34 H 1.09005 * 109.47493 * 59.99662 * 8 7 6 35 35 H 1.08998 * 109.47006 * 299.99626 * 8 7 6 36 36 H 0.97001 * 119.99667 * 0.02562 * 12 11 9 37 37 H 1.08004 * 126.57469 * 0.02562 * 20 19 17 38 38 H 1.08002 * 126.58248 * 180.17058 * 21 20 19 39 39 H 1.08003 * 125.78956 * 179.79697 * 22 21 20 40 40 H 1.08997 * 109.50754 * 299.23970 * 24 17 6 41 41 H 1.09007 * 109.50294 * 179.11960 * 24 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7243 1.2483 5 6 3.5709 -0.7731 1.2129 6 7 4.0116 -1.4768 0.0017 7 6 5.4685 -1.6642 0.0024 8 6 5.8600 -2.6129 1.1372 9 6 7.3546 -2.8058 1.1377 10 1 7.9642 -2.3025 0.4020 11 6 7.9435 -3.6257 2.0768 12 7 7.2011 -4.2391 2.9724 13 14 9.7962 -3.8643 2.0778 14 1 10.3983 -3.0698 0.9771 15 1 10.1104 -5.3020 1.8791 16 1 10.3530 -3.4111 3.3778 17 6 3.5721 -0.7736 -1.2104 18 1 3.9679 0.2420 -1.2046 19 6 4.0808 -1.5037 -2.4267 20 6 4.5613 -0.9303 -3.5446 21 6 4.9245 -1.9797 -4.4195 22 6 4.6367 -3.1316 -3.7873 23 8 4.1259 -2.8371 -2.5806 24 6 2.0430 -0.7249 -1.2473 25 1 -0.3633 0.5119 0.8911 26 1 -0.3634 0.5157 -0.8888 27 1 -0.3634 -1.0277 -0.0022 28 1 1.6456 -1.7396 1.2679 29 1 1.7151 -0.1890 2.1399 30 1 3.9378 -1.3008 2.0932 31 1 3.9666 0.2424 1.2072 32 1 5.9587 -0.7017 0.1482 33 1 5.7805 -2.0903 -0.9512 34 1 5.3698 -3.5756 0.9915 35 1 5.5479 -2.1870 2.0908 36 1 6.2391 -4.1149 2.9721 37 1 4.6540 0.1286 -3.7360 38 1 5.3485 -1.8764 -5.4075 39 1 4.7906 -4.1247 -4.1828 40 1 1.6469 -1.7402 -1.2670 41 1 1.7174 -0.1893 -2.1391 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247569910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:53 Heat of formation + Delta-G solvation = -4.272723 kcal Electronic energy + Delta-G solvation = -20517.738574 eV Core-core repulsion = 17591.305666 eV Total energy + Delta-G solvation = -2926.432907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.34775 -39.03770 -35.06928 -33.25212 -32.78187 -31.78326 -29.75202 -28.15751 -27.10943 -23.86437 -23.31630 -22.37914 -21.49303 -20.51017 -19.93913 -19.42635 -17.18174 -16.63520 -15.78996 -15.41797 -14.87850 -14.53934 -14.21790 -13.98102 -13.68926 -13.32965 -13.24268 -12.74467 -12.58040 -12.42588 -12.27826 -11.98114 -11.86478 -11.63917 -11.32788 -11.10545 -10.83415 -10.63765 -10.41764 -10.28081 -10.11213 -9.97217 -9.68560 -9.55567 -8.53068 -8.26409 -8.19773 -7.84391 -6.31673 -3.99640 2.00064 2.81470 3.27587 3.46067 3.50444 3.63810 4.19455 4.58472 4.70180 4.85479 4.87184 5.05578 5.21305 5.26427 5.34421 5.38797 5.46216 5.53830 5.65521 5.68091 5.73718 5.76962 5.97035 6.00516 6.04024 6.06476 6.12665 6.18842 6.23641 6.31372 6.35748 6.45153 6.52779 6.68237 6.87487 7.25487 7.42049 7.46034 7.69199 7.75735 8.29547 8.52462 8.94235 9.72337 11.09708 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.006227 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.103627 B = 4495.788451 C = 5825.393257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.066 0.934 4 C -0.112 4.112 5 C 0.054 3.946 6 N -0.531 5.531 7 C 0.071 3.929 8 C 0.018 3.982 9 C -0.601 4.601 10 H 0.047 0.953 11 C 0.016 3.984 12 N -0.915 5.915 13 Si 1.073 2.927 14 H -0.290 1.290 15 H -0.287 1.287 16 H -0.287 1.287 17 C 0.162 3.838 18 H 0.062 0.938 19 C 0.017 3.983 20 C -0.223 4.223 21 C -0.218 4.218 22 C -0.044 4.044 23 O -0.153 6.153 24 C -0.102 4.102 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.064 0.936 34 H 0.016 0.984 35 H 0.008 0.992 36 H 0.270 0.730 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.199 0.801 40 H 0.075 0.925 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.368 8.297 -10.613 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.073 4.073 6 N -0.256 5.256 7 C -0.055 4.055 8 C -0.020 4.020 9 C -0.640 4.640 10 H 0.065 0.935 11 C -0.188 4.188 12 N -0.551 5.551 13 Si 0.902 3.098 14 H -0.216 1.216 15 H -0.213 1.213 16 H -0.214 1.214 17 C 0.053 3.947 18 H 0.080 0.920 19 C -0.035 4.035 20 C -0.243 4.243 21 C -0.237 4.237 22 C -0.112 4.112 23 O -0.047 6.047 24 C -0.140 4.140 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.026 0.974 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.215 0.785 40 H 0.094 0.906 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.444 6.856 -9.610 15.762 hybrid contribution -0.595 1.682 -1.150 2.123 sum -11.040 8.538 -10.760 17.622 Atomic orbital electron populations 1.21790 0.95069 1.01903 1.01327 1.21179 0.95556 0.99155 0.95237 0.91576 1.21690 0.95329 1.01200 0.96783 1.22126 0.94785 0.96355 0.94057 1.62093 1.15549 1.47956 1.00022 1.22206 0.83067 0.98600 1.01630 1.19205 0.96494 0.94171 0.92083 1.22053 0.92125 1.31756 1.18018 0.93504 1.25798 1.06817 0.93280 0.92871 1.70706 1.07729 1.41839 1.34825 0.83493 0.74322 0.76284 0.75705 1.21607 1.21327 1.21367 1.20159 0.95318 0.93398 0.85838 0.92048 1.22260 1.03051 0.80894 0.97251 1.21480 1.07741 1.00248 0.94800 1.21702 1.07881 0.92247 1.01885 1.24045 1.02422 1.00288 0.84471 1.84161 1.63483 1.24050 1.32994 1.21695 0.92988 1.01826 0.97516 0.92725 0.92939 0.92531 0.90959 0.91722 0.89418 0.95425 0.96203 0.91734 0.96581 0.97436 0.91958 0.84024 0.83860 0.78475 0.90640 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 37.16 0.34 -1.04 16 2 C -0.09 -1.08 2.79 -90.50 -0.25 -1.33 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.50 5.38 -26.65 -0.14 -1.64 16 5 C 0.05 0.91 5.29 -3.83 -0.02 0.89 16 6 N -0.53 -9.95 4.48 -228.08 -1.02 -10.97 16 7 C 0.07 1.60 4.68 -3.82 -0.02 1.59 16 8 C 0.02 0.48 4.22 -27.88 -0.12 0.36 16 9 C -0.60 -17.71 9.11 -34.44 -0.31 -18.02 16 10 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 11 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 12 N -0.91 -28.66 13.65 55.43 0.76 -27.91 16 13 Si 1.07 26.07 29.90 -169.99 -5.08 20.99 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.16 2.55 2.30 -68.87 -0.16 2.39 16 18 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 19 C 0.02 0.28 4.42 -35.62 -0.16 0.12 16 20 C -0.22 -3.31 10.80 -39.71 -0.43 -3.74 16 21 C -0.22 -3.02 10.91 -39.71 -0.43 -3.45 16 22 C -0.04 -0.64 12.09 29.42 0.36 -0.28 16 23 O -0.15 -2.74 10.15 5.71 0.06 -2.68 16 24 C -0.10 -1.33 4.64 -26.65 -0.12 -1.46 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.65 6.22 -51.93 -0.32 1.33 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.45 8.12 -51.93 -0.42 0.02 16 33 H 0.06 1.52 6.18 -51.93 -0.32 1.20 16 34 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 35 H 0.01 0.21 6.30 -51.93 -0.33 -0.12 16 36 H 0.27 8.46 7.22 -40.82 -0.29 8.16 16 37 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.20 2.14 8.06 -52.48 -0.42 1.71 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -32.42 326.19 -8.74 -41.16 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.80 Total: -0.26 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -1.57 Total: -25.24 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.26 Total: -38.88 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: 0.06 Total: -2.68 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.42 -8.74 -41.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247569910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.888 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds