Wall clock time and date at job start Mon Mar 30 2020 07:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.52750 * 2 1 4 4 C 1.53121 * 109.52187 * 120.12486 * 2 1 3 5 5 C 1.53040 * 109.27773 * 177.62151 * 4 2 1 6 6 N 1.46849 * 109.52377 * 300.81908 * 5 4 2 7 7 C 1.46896 * 110.99866 * 185.83550 * 6 5 4 8 8 C 1.53002 * 109.46899 * 66.05154 * 7 6 5 9 9 C 1.50703 * 109.47207 * 179.97438 * 8 7 6 10 10 H 1.07994 * 119.99603 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99838 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00380 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99848 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99776 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99769 * 13 11 9 17 17 C 1.46854 * 111.19400 * 61.74338 * 6 5 4 18 18 H 1.09000 * 109.45867 * 58.27343 * 17 6 5 19 19 C 1.50701 * 109.45914 * 178.24046 * 17 6 5 20 20 C 1.34515 * 125.79027 * 219.71659 * 19 17 6 21 21 C 1.41374 * 106.84225 * 179.89235 * 20 19 17 22 22 C 1.34515 * 106.84182 * 0.36845 * 21 20 19 23 23 O 1.34302 * 108.42054 * 359.77306 * 22 21 20 24 24 C 1.53030 * 109.52116 * 298.25452 * 17 6 5 25 25 H 1.09005 * 109.47107 * 299.87424 * 1 2 3 26 26 H 1.08997 * 109.47397 * 59.87558 * 1 2 3 27 27 H 1.09005 * 109.47307 * 179.87675 * 1 2 3 28 28 H 1.08998 * 109.50457 * 57.68432 * 4 2 1 29 29 H 1.09001 * 109.53738 * 297.58504 * 4 2 1 30 30 H 1.08998 * 109.46235 * 180.80556 * 5 4 2 31 31 H 1.08994 * 109.46222 * 60.83744 * 5 4 2 32 32 H 1.08993 * 109.47625 * 306.04997 * 7 6 5 33 33 H 1.09006 * 109.47099 * 186.04477 * 7 6 5 34 34 H 1.09005 * 109.47493 * 59.99662 * 8 7 6 35 35 H 1.08998 * 109.47006 * 299.99626 * 8 7 6 36 36 H 0.97001 * 119.99667 * 0.02562 * 12 11 9 37 37 H 1.08004 * 126.57469 * 0.02562 * 20 19 17 38 38 H 1.08002 * 126.58248 * 180.17058 * 21 20 19 39 39 H 1.08003 * 125.78956 * 179.79697 * 22 21 20 40 40 H 1.08997 * 109.50754 * 299.23970 * 24 17 6 41 41 H 1.09007 * 109.50294 * 179.11960 * 24 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7243 1.2483 5 6 3.5709 -0.7731 1.2129 6 7 4.0116 -1.4768 0.0017 7 6 5.4685 -1.6642 0.0024 8 6 5.8600 -2.6129 1.1372 9 6 7.3546 -2.8058 1.1377 10 1 7.9642 -2.3025 0.4020 11 6 7.9435 -3.6257 2.0768 12 7 7.2011 -4.2391 2.9724 13 14 9.7962 -3.8643 2.0778 14 1 10.3983 -3.0698 0.9771 15 1 10.1104 -5.3020 1.8791 16 1 10.3530 -3.4111 3.3778 17 6 3.5721 -0.7736 -1.2104 18 1 3.9679 0.2420 -1.2046 19 6 4.0808 -1.5037 -2.4267 20 6 4.5613 -0.9303 -3.5446 21 6 4.9245 -1.9797 -4.4195 22 6 4.6367 -3.1316 -3.7873 23 8 4.1259 -2.8371 -2.5806 24 6 2.0430 -0.7249 -1.2473 25 1 -0.3633 0.5119 0.8911 26 1 -0.3634 0.5157 -0.8888 27 1 -0.3634 -1.0277 -0.0022 28 1 1.6456 -1.7396 1.2679 29 1 1.7151 -0.1890 2.1399 30 1 3.9378 -1.3008 2.0932 31 1 3.9666 0.2424 1.2072 32 1 5.9587 -0.7017 0.1482 33 1 5.7805 -2.0903 -0.9512 34 1 5.3698 -3.5756 0.9915 35 1 5.5479 -2.1870 2.0908 36 1 6.2391 -4.1149 2.9721 37 1 4.6540 0.1286 -3.7360 38 1 5.3485 -1.8764 -5.4075 39 1 4.7906 -4.1247 -4.1828 40 1 1.6469 -1.7402 -1.2670 41 1 1.7174 -0.1893 -2.1391 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247569910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:52 Heat of formation + Delta-G solvation = -23.802003 kcal Electronic energy + Delta-G solvation = -20518.585427 eV Core-core repulsion = 17591.305666 eV Total energy + Delta-G solvation = -2927.279760 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.53008 -40.32422 -36.63778 -35.10251 -34.04374 -33.04602 -31.45149 -29.36930 -28.46836 -25.83221 -24.54478 -23.80882 -22.67699 -22.20762 -21.07837 -20.60530 -19.00714 -18.21048 -17.08906 -16.81140 -16.22079 -15.79315 -15.61272 -15.54006 -15.12630 -14.82769 -14.69333 -14.37398 -13.82439 -13.68369 -13.50500 -13.35809 -13.12928 -12.85310 -12.77651 -12.65532 -12.33328 -12.12197 -11.95911 -11.86315 -11.60176 -11.42367 -11.13969 -10.81856 -10.74786 -10.55443 -9.36817 -9.33725 -8.73139 -6.42804 0.82577 1.49327 1.59785 1.70875 1.76409 2.15862 2.52600 2.84073 3.13141 3.56858 3.78049 3.84031 4.01484 4.06339 4.14551 4.18760 4.26025 4.28233 4.43994 4.44940 4.65439 4.73244 4.76354 4.81005 4.84761 4.90314 4.95552 4.97697 5.07255 5.15674 5.16586 5.20977 5.23705 5.33820 5.39395 5.50737 5.61588 5.84619 6.06231 6.13595 6.15983 6.35295 6.54335 7.39496 8.68096 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.006227 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.103627 B = 4495.788451 C = 5825.393257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.105 4.105 5 C 0.053 3.947 6 N -0.543 5.543 7 C 0.093 3.907 8 C 0.026 3.974 9 C -0.620 4.620 10 H 0.045 0.955 11 C -0.036 4.036 12 N -0.935 5.935 13 Si 1.124 2.876 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.274 1.274 17 C 0.160 3.840 18 H 0.072 0.928 19 C -0.015 4.015 20 C -0.221 4.221 21 C -0.218 4.218 22 C -0.058 4.058 23 O -0.187 6.187 24 C -0.095 4.095 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.016 0.984 33 H 0.052 0.948 34 H -0.016 1.016 35 H -0.005 1.005 36 H 0.255 0.745 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.226 0.774 40 H 0.058 0.942 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.424 9.779 -12.054 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.143 4.143 5 C -0.075 4.075 6 N -0.268 5.268 7 C -0.034 4.034 8 C -0.011 4.011 9 C -0.658 4.658 10 H 0.064 0.936 11 C -0.233 4.233 12 N -0.572 5.572 13 Si 0.944 3.056 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.200 1.200 17 C 0.052 3.948 18 H 0.089 0.911 19 C -0.065 4.065 20 C -0.240 4.240 21 C -0.237 4.237 22 C -0.125 4.125 23 O -0.083 6.083 24 C -0.132 4.132 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.002 0.998 35 H 0.013 0.987 36 H 0.064 0.936 37 H 0.181 0.819 38 H 0.191 0.809 39 H 0.243 0.757 40 H 0.077 0.923 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.537 8.357 -11.065 17.416 hybrid contribution -0.611 1.212 -0.747 1.549 sum -11.148 9.569 -11.812 18.851 Atomic orbital electron populations 1.21743 0.93100 1.02025 1.02698 1.21172 0.97085 0.99116 0.93203 0.90278 1.21660 0.92386 1.01217 0.99033 1.22156 0.97365 0.95877 0.92067 1.61978 1.12766 1.49924 1.02171 1.21739 0.85906 0.96941 0.98833 1.19039 0.95226 0.93574 0.93272 1.22436 0.93465 1.31846 1.18039 0.93631 1.27467 1.11360 0.92456 0.92021 1.70848 1.07088 1.43180 1.36107 0.82868 0.68704 0.77101 0.76901 1.19608 1.20207 1.19984 1.20324 0.97157 0.93264 0.84032 0.91068 1.22537 1.04875 0.80820 0.98294 1.21859 1.06337 1.01587 0.94257 1.22102 1.07213 0.91524 1.02889 1.24782 1.01972 1.02151 0.83622 1.84125 1.64518 1.24973 1.34715 1.21676 0.90782 1.01465 0.99318 0.91522 0.91431 0.93070 0.92291 0.89604 0.92594 0.94576 0.96563 0.92999 0.99765 0.98725 0.93557 0.81872 0.80941 0.75737 0.92315 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.20 71.98 0.66 -1.62 16 2 C -0.09 -1.84 2.79 -10.71 -0.03 -1.87 16 3 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.11 -2.74 5.38 30.65 0.16 -2.57 16 5 C 0.05 1.81 5.29 86.33 0.46 2.26 16 6 N -0.54 -20.91 4.48 -875.51 -3.92 -24.83 16 7 C 0.09 4.34 4.68 86.30 0.40 4.75 16 8 C 0.03 1.48 4.22 29.85 0.13 1.60 16 9 C -0.62 -37.47 9.11 25.60 0.23 -37.24 16 10 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 11 C -0.04 -2.15 5.46 84.65 0.46 -1.69 16 12 N -0.94 -60.11 13.65 21.45 0.29 -59.81 16 13 Si 1.12 52.09 29.90 68.60 2.05 54.15 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 C 0.16 4.97 2.30 44.19 0.10 5.07 16 18 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 19 C -0.01 -0.48 4.42 24.83 0.11 -0.37 16 20 C -0.22 -6.20 10.80 22.19 0.24 -5.96 16 21 C -0.22 -5.63 10.91 22.19 0.24 -5.39 16 22 C -0.06 -1.64 12.09 66.97 0.81 -0.83 16 23 O -0.19 -6.81 10.15 -2.50 -0.03 -6.84 16 24 C -0.09 -2.33 4.64 30.64 0.14 -2.19 16 25 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 2.24 6.22 -2.39 -0.01 2.22 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 33 H 0.05 2.53 6.18 -2.38 -0.01 2.51 16 34 H -0.02 -0.99 8.01 -2.38 -0.02 -1.01 16 35 H -0.01 -0.32 6.30 -2.39 -0.02 -0.33 16 36 H 0.26 16.74 7.22 -92.71 -0.67 16.07 16 37 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.23 4.61 8.06 -2.91 -0.02 4.58 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -72.19 326.19 3.60 -68.58 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.08 Total: 14.80 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 4.12 Total: -46.05 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -3.63 Total: -84.64 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.03 Total: -6.84 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 2.05 Total: 54.15 kcal Total: -72.19 3.60 -68.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247569910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.781 kcal (2) G-P(sol) polarization free energy of solvation -72.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds