Wall clock time and date at job start Mon Mar 30 2020 07:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 N 1.46490 * 109.47041 * 120.00332 * 2 1 3 5 5 C 1.36941 * 120.00401 * 302.23322 * 4 2 1 6 6 H 1.08001 * 119.99862 * 321.91996 * 5 4 2 7 7 C 1.38813 * 119.99867 * 141.91363 * 5 4 2 8 8 N 1.31613 * 120.00349 * 338.45765 * 7 5 4 9 9 Si 1.86798 * 119.99653 * 158.45568 * 7 5 4 10 10 H 1.48494 * 109.47400 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47007 * 120.00237 * 9 7 5 12 12 H 1.48498 * 109.47329 * 240.00123 * 9 7 5 13 13 C 1.46502 * 119.99837 * 122.23980 * 4 2 1 14 14 C 1.53000 * 109.47560 * 89.99713 * 13 4 2 15 15 C 1.52995 * 109.47074 * 179.97438 * 14 13 4 16 16 H 1.08997 * 109.47699 * 304.99985 * 15 14 13 17 17 O 1.42897 * 109.46968 * 65.00612 * 15 14 13 18 18 C 1.50701 * 109.46744 * 184.99811 * 15 14 13 19 19 C 1.38234 * 120.00359 * 279.72900 * 18 15 14 20 20 C 1.38230 * 120.00335 * 179.78930 * 19 18 15 21 21 C 1.38239 * 119.99991 * 0.43950 * 20 19 18 22 22 C 1.38234 * 119.99579 * 359.81607 * 21 20 19 23 23 C 1.38233 * 120.00522 * 359.97372 * 22 21 20 24 24 H 1.09005 * 109.46761 * 305.40295 * 1 2 3 25 25 H 1.08998 * 109.47494 * 65.39617 * 1 2 3 26 26 H 1.09000 * 109.47183 * 185.40159 * 1 2 3 27 27 H 1.08997 * 109.46531 * 240.00506 * 2 1 3 28 28 H 1.08998 * 109.46855 * 180.44573 * 3 2 1 29 29 H 1.08993 * 109.47469 * 300.44445 * 3 2 1 30 30 H 1.08997 * 109.47260 * 60.44764 * 3 2 1 31 31 H 0.97001 * 120.00443 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47240 * 329.99340 * 13 4 2 33 33 H 1.09008 * 109.47054 * 209.99804 * 13 4 2 34 34 H 1.09003 * 109.47050 * 60.00074 * 14 13 4 35 35 H 1.08996 * 109.46880 * 300.00524 * 14 13 4 36 36 H 0.96699 * 114.00543 * 59.99370 * 17 15 14 37 37 H 1.08004 * 119.99897 * 359.97438 * 19 18 15 38 38 H 1.08000 * 120.00445 * 180.27601 * 20 19 18 39 39 H 1.07997 * 120.00061 * 179.83331 * 21 20 19 40 40 H 1.07998 * 119.99645 * 179.97438 * 22 21 20 41 41 H 1.07991 * 120.00506 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6503 -0.2502 2.4394 6 1 1.5675 0.8088 2.6345 7 6 1.3834 -1.1649 3.4488 8 7 1.0661 -2.4057 3.1456 9 14 1.4746 -0.6347 5.2376 10 1 1.8485 0.8006 5.3101 11 1 0.1512 -0.8341 5.8811 12 1 2.4961 -1.4490 5.9438 13 6 2.9006 -1.8525 1.0621 14 6 4.3581 -1.3873 1.0480 15 6 5.2794 -2.6008 0.9087 16 1 5.0595 -3.3168 1.7005 17 8 5.0670 -3.2166 -0.3631 18 6 6.7153 -2.1564 1.0180 19 6 7.3512 -1.5982 -0.0751 20 6 8.6669 -1.1866 0.0263 21 6 9.3496 -1.3415 1.2183 22 6 8.7154 -1.9046 2.3099 23 6 7.3983 -2.3123 2.2097 24 1 -0.3633 0.5954 0.8377 25 1 -0.3634 0.4278 -0.9343 26 1 -0.3633 -1.0231 0.0967 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0080 29 1 1.6703 1.9587 -0.8859 30 1 1.6833 1.9540 0.8939 31 1 0.8799 -3.0450 3.8510 32 1 2.6765 -2.3735 0.1313 33 1 2.7428 -2.5275 1.9034 34 1 4.5823 -0.8663 1.9789 35 1 4.5159 -0.7123 0.2068 36 1 5.2440 -2.6360 -1.1158 37 1 6.8191 -1.4808 -1.0076 38 1 9.1623 -0.7463 -0.8264 39 1 10.3784 -1.0224 1.2968 40 1 9.2488 -2.0261 3.2410 41 1 6.9029 -2.7525 3.0623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310101021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:32 Heat of formation + Delta-G solvation = -19.746180 kcal Electronic energy + Delta-G solvation = -20239.645625 eV Core-core repulsion = 17312.541738 eV Total energy + Delta-G solvation = -2927.103887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.48201 -37.09547 -36.09151 -32.50250 -31.88383 -30.79480 -30.63420 -28.33732 -26.14647 -25.28630 -23.52709 -22.51509 -21.27757 -20.47016 -19.47084 -17.40347 -16.17426 -15.74481 -15.45176 -14.99323 -14.84523 -14.16732 -14.03825 -13.55708 -13.47310 -13.24829 -12.82010 -12.57072 -12.36703 -12.04752 -11.58640 -11.52685 -11.30240 -11.17458 -11.04424 -10.90639 -10.71980 -10.50935 -10.39021 -10.07468 -9.98020 -9.74364 -9.47742 -9.38654 -8.85337 -8.57785 -8.40749 -6.47325 -5.72148 -3.29972 1.42896 1.46833 3.36072 3.45548 3.48000 3.84846 4.50843 4.82604 4.84096 4.93251 5.02714 5.16066 5.35801 5.42256 5.54534 5.60232 5.74505 5.92925 5.99254 6.04970 6.08665 6.23290 6.35329 6.40066 6.47554 6.48384 6.55259 6.61072 6.74075 6.77371 6.83678 6.84292 6.87721 7.06858 7.21397 7.26488 7.39435 7.77131 7.90370 7.94382 8.59850 9.27170 9.89870 10.49474 11.27223 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.006091 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.033963 B = 4595.642909 C = 5384.913375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 C -0.154 4.154 4 N -0.580 5.580 5 C -0.250 4.250 6 H 0.058 0.942 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.289 1.289 13 C 0.154 3.846 14 C -0.156 4.156 15 C 0.145 3.855 16 H 0.105 0.895 17 O -0.554 6.554 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.112 4.112 24 H 0.053 0.947 25 H 0.028 0.972 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.252 0.748 32 H 0.029 0.971 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.366 0.634 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 1.611 -5.827 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.055 3.945 3 C -0.213 4.213 4 N -0.301 5.301 5 C -0.380 4.380 6 H 0.076 0.924 7 C -0.188 4.188 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.215 1.215 13 C 0.027 3.973 14 C -0.196 4.196 15 C 0.085 3.915 16 H 0.123 0.877 17 O -0.359 6.359 18 C -0.100 4.100 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.137 4.137 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.213 0.787 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.956 0.961 -5.347 13.132 hybrid contribution 0.299 0.832 0.796 1.189 sum 12.254 1.793 -4.552 13.195 Atomic orbital electron populations 1.22063 0.97948 1.01537 0.98867 1.20398 0.92410 0.91711 0.89941 1.22184 1.00043 0.99090 0.99966 1.43890 1.51872 1.33347 1.00944 1.18934 1.41089 0.91240 0.86725 0.92423 1.25157 0.98715 0.96437 0.98507 1.70026 1.47256 1.04154 1.31381 0.86449 0.77341 0.78310 0.86050 1.20194 1.21746 1.21533 1.20836 0.84988 0.90406 1.01061 1.22907 0.99148 0.95820 1.01741 1.21004 0.88216 0.96050 0.86223 0.87702 1.86613 1.91376 1.42842 1.15072 1.20835 0.97380 0.97763 0.94033 1.20864 0.94989 0.99061 0.98346 1.21068 0.94739 1.00245 0.97749 1.21086 0.99769 1.00508 0.93513 1.21120 0.95011 0.99049 0.98548 1.21070 0.94462 0.99996 0.97477 0.92832 0.95345 0.93013 0.93760 0.93963 0.94647 0.92821 0.93759 0.95292 0.89126 0.91402 0.93466 0.78690 0.86395 0.86342 0.86466 0.86257 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.03 37.16 0.34 -2.66 16 2 C 0.16 3.41 3.36 -67.93 -0.23 3.18 16 3 C -0.15 -2.88 9.20 37.16 0.34 -2.54 16 4 N -0.58 -14.00 2.36 -165.66 -0.39 -14.39 16 5 C -0.25 -6.63 8.23 -15.06 -0.12 -6.76 16 6 H 0.06 1.56 6.95 -52.49 -0.36 1.19 16 7 C 0.01 0.32 4.94 -17.43 -0.09 0.24 16 8 N -0.89 -25.21 11.52 55.49 0.64 -24.57 16 9 Si 0.89 21.41 29.61 -169.99 -5.03 16.38 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.15 3.51 5.17 -4.04 -0.02 3.49 16 14 C -0.16 -2.97 5.20 -26.73 -0.14 -3.11 16 15 C 0.14 2.41 3.21 -27.88 -0.09 2.32 16 16 H 0.11 1.86 8.00 -51.93 -0.42 1.44 16 17 O -0.55 -8.97 12.72 -35.23 -0.45 -9.42 16 18 C -0.10 -1.49 4.97 -104.62 -0.52 -2.01 16 19 C -0.11 -1.51 9.32 -39.59 -0.37 -1.88 16 20 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 22 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 23 C -0.11 -1.59 9.67 -39.58 -0.38 -1.97 16 24 H 0.05 1.17 7.80 -51.93 -0.40 0.76 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.04 0.88 7.78 -51.93 -0.40 0.48 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.07 7.06 -51.93 -0.37 0.71 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.03 0.66 7.58 -51.93 -0.39 0.26 16 33 H 0.09 2.38 5.56 -51.92 -0.29 2.09 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.37 4.64 7.50 45.56 0.34 4.98 16 37 H 0.12 1.33 6.78 -52.48 -0.36 0.98 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.67 8.04 -52.49 -0.42 1.24 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -29.42 334.36 -8.68 -38.11 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.01 Total: 6.16 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.48 Total: -17.31 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.25 Total: -38.96 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.45 Total: -9.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.42 -8.68 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310101021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.359 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds