Wall clock time and date at job start Mon Mar 30 2020 07:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 N 1.46490 * 109.47041 * 120.00332 * 2 1 3 5 5 C 1.36941 * 120.00401 * 302.23322 * 4 2 1 6 6 H 1.08001 * 119.99862 * 321.91996 * 5 4 2 7 7 C 1.38813 * 119.99867 * 141.91363 * 5 4 2 8 8 N 1.31613 * 120.00349 * 338.45765 * 7 5 4 9 9 Si 1.86798 * 119.99653 * 158.45568 * 7 5 4 10 10 H 1.48494 * 109.47400 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47007 * 120.00237 * 9 7 5 12 12 H 1.48498 * 109.47329 * 240.00123 * 9 7 5 13 13 C 1.46502 * 119.99837 * 122.23980 * 4 2 1 14 14 C 1.53000 * 109.47560 * 89.99713 * 13 4 2 15 15 C 1.52995 * 109.47074 * 179.97438 * 14 13 4 16 16 H 1.08997 * 109.47699 * 304.99985 * 15 14 13 17 17 O 1.42897 * 109.46968 * 65.00612 * 15 14 13 18 18 C 1.50701 * 109.46744 * 184.99811 * 15 14 13 19 19 C 1.38234 * 120.00359 * 279.72900 * 18 15 14 20 20 C 1.38230 * 120.00335 * 179.78930 * 19 18 15 21 21 C 1.38239 * 119.99991 * 0.43950 * 20 19 18 22 22 C 1.38234 * 119.99579 * 359.81607 * 21 20 19 23 23 C 1.38233 * 120.00522 * 359.97372 * 22 21 20 24 24 H 1.09005 * 109.46761 * 305.40295 * 1 2 3 25 25 H 1.08998 * 109.47494 * 65.39617 * 1 2 3 26 26 H 1.09000 * 109.47183 * 185.40159 * 1 2 3 27 27 H 1.08997 * 109.46531 * 240.00506 * 2 1 3 28 28 H 1.08998 * 109.46855 * 180.44573 * 3 2 1 29 29 H 1.08993 * 109.47469 * 300.44445 * 3 2 1 30 30 H 1.08997 * 109.47260 * 60.44764 * 3 2 1 31 31 H 0.97001 * 120.00443 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47240 * 329.99340 * 13 4 2 33 33 H 1.09008 * 109.47054 * 209.99804 * 13 4 2 34 34 H 1.09003 * 109.47050 * 60.00074 * 14 13 4 35 35 H 1.08996 * 109.46880 * 300.00524 * 14 13 4 36 36 H 0.96699 * 114.00543 * 59.99370 * 17 15 14 37 37 H 1.08004 * 119.99897 * 359.97438 * 19 18 15 38 38 H 1.08000 * 120.00445 * 180.27601 * 20 19 18 39 39 H 1.07997 * 120.00061 * 179.83331 * 21 20 19 40 40 H 1.07998 * 119.99645 * 179.97438 * 22 21 20 41 41 H 1.07991 * 120.00506 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6503 -0.2502 2.4394 6 1 1.5675 0.8088 2.6345 7 6 1.3834 -1.1649 3.4488 8 7 1.0661 -2.4057 3.1456 9 14 1.4746 -0.6347 5.2376 10 1 1.8485 0.8006 5.3101 11 1 0.1512 -0.8341 5.8811 12 1 2.4961 -1.4490 5.9438 13 6 2.9006 -1.8525 1.0621 14 6 4.3581 -1.3873 1.0480 15 6 5.2794 -2.6008 0.9087 16 1 5.0595 -3.3168 1.7005 17 8 5.0670 -3.2166 -0.3631 18 6 6.7153 -2.1564 1.0180 19 6 7.3512 -1.5982 -0.0751 20 6 8.6669 -1.1866 0.0263 21 6 9.3496 -1.3415 1.2183 22 6 8.7154 -1.9046 2.3099 23 6 7.3983 -2.3123 2.2097 24 1 -0.3633 0.5954 0.8377 25 1 -0.3634 0.4278 -0.9343 26 1 -0.3633 -1.0231 0.0967 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0080 29 1 1.6703 1.9587 -0.8859 30 1 1.6833 1.9540 0.8939 31 1 0.8799 -3.0450 3.8510 32 1 2.6765 -2.3735 0.1313 33 1 2.7428 -2.5275 1.9034 34 1 4.5823 -0.8663 1.9789 35 1 4.5159 -0.7123 0.2068 36 1 5.2440 -2.6360 -1.1158 37 1 6.8191 -1.4808 -1.0076 38 1 9.1623 -0.7463 -0.8264 39 1 10.3784 -1.0224 1.2968 40 1 9.2488 -2.0261 3.2410 41 1 6.9029 -2.7525 3.0623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310101021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:31 Heat of formation + Delta-G solvation = -36.293051 kcal Electronic energy + Delta-G solvation = -20240.363151 eV Core-core repulsion = 17312.541738 eV Total energy + Delta-G solvation = -2927.821413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57195 -38.59950 -37.60177 -34.31264 -33.40952 -32.08043 -31.73310 -30.00613 -27.75175 -26.99089 -25.14451 -23.50906 -22.70537 -21.78687 -21.30264 -18.56682 -18.01935 -17.01055 -16.75968 -16.63693 -16.28315 -15.68691 -15.57274 -14.99367 -14.79463 -14.28587 -14.24692 -14.15750 -13.75285 -13.63933 -13.21264 -13.02402 -12.88580 -12.76105 -12.56897 -12.51524 -12.26293 -12.04563 -11.95375 -11.79229 -11.64558 -11.37194 -11.29819 -10.87550 -10.46250 -9.81801 -9.62934 -8.46562 -7.75759 -5.37837 0.42943 0.50315 1.41998 1.46214 1.54969 2.52060 2.85412 3.27989 3.55729 3.60122 3.84027 3.94823 4.15257 4.27535 4.28805 4.35066 4.44135 4.58706 4.61031 4.66019 4.76918 4.83154 4.95194 4.97053 5.05521 5.12176 5.15153 5.18146 5.19650 5.21946 5.48293 5.56778 5.60928 5.61200 5.67933 5.70945 5.76380 5.91577 6.12019 6.54232 6.81393 7.24800 7.95913 8.48589 9.19205 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.006091 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.033963 B = 4595.642909 C = 5384.913375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.152 3.848 3 C -0.141 4.141 4 N -0.595 5.595 5 C -0.246 4.246 6 H 0.052 0.948 7 C -0.037 4.037 8 N -0.917 5.917 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.293 1.293 12 H -0.290 1.290 13 C 0.157 3.843 14 C -0.134 4.134 15 C 0.157 3.843 16 H 0.083 0.917 17 O -0.564 6.564 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.134 4.134 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.248 0.752 32 H 0.025 0.975 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.383 0.617 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.196 3.178 -7.181 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 C -0.200 4.200 4 N -0.316 5.316 5 C -0.376 4.376 6 H 0.070 0.930 7 C -0.234 4.234 8 N -0.562 5.562 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.220 1.220 12 H -0.217 1.217 13 C 0.031 3.969 14 C -0.174 4.174 15 C 0.097 3.903 16 H 0.101 0.899 17 O -0.371 6.371 18 C -0.121 4.121 19 C -0.140 4.140 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.153 4.153 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.232 0.768 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.967 2.553 -6.725 15.710 hybrid contribution -0.291 0.359 1.115 1.207 sum 13.676 2.912 -5.610 15.066 Atomic orbital electron populations 1.21966 0.97813 0.99640 1.00081 1.20655 0.92597 0.93034 0.89136 1.22024 1.00105 0.97213 1.00661 1.44125 1.52587 1.33545 1.01336 1.19059 1.39687 0.90931 0.87970 0.93014 1.25761 0.99356 0.96594 1.01681 1.70151 1.49037 1.05056 1.31960 0.85574 0.76844 0.78130 0.82154 1.19398 1.22037 1.21724 1.20688 0.87226 0.89783 0.99193 1.22569 0.97046 0.96762 1.01009 1.20644 0.89359 0.94235 0.86034 0.89903 1.86577 1.91558 1.43524 1.15454 1.20665 0.96306 0.99829 0.95331 1.21121 0.95904 0.98674 0.98301 1.21463 0.94149 0.99389 0.98890 1.21517 1.01113 0.99055 0.92911 1.21409 0.94252 0.98624 1.00013 1.21210 0.95717 1.01032 0.97296 0.94649 0.91551 0.95850 0.92368 0.93734 0.91345 0.94590 0.94284 0.95614 0.92744 0.93679 0.92068 0.76801 0.84743 0.83385 0.83423 0.84212 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 9.03 71.98 0.65 -4.87 16 2 C 0.15 6.21 3.36 45.00 0.15 6.36 16 3 C -0.14 -4.98 9.20 71.98 0.66 -4.32 16 4 N -0.59 -29.02 2.36 -678.03 -1.60 -30.62 16 5 C -0.25 -13.26 8.23 84.03 0.69 -12.57 16 6 H 0.05 2.83 6.95 -2.91 -0.02 2.81 16 7 C -0.04 -2.06 4.94 84.86 0.42 -1.64 16 8 N -0.92 -54.18 11.52 21.65 0.25 -53.93 16 9 Si 0.94 45.05 29.61 68.60 2.03 47.08 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 C 0.16 7.39 5.17 86.38 0.45 7.84 16 14 C -0.13 -5.16 5.20 30.59 0.16 -5.00 16 15 C 0.16 5.33 3.21 29.85 0.10 5.42 16 16 H 0.08 3.13 8.00 -2.39 -0.02 3.11 16 17 O -0.56 -18.06 12.72 -148.98 -1.90 -19.95 16 18 C -0.12 -3.55 4.97 -19.86 -0.10 -3.65 16 19 C -0.12 -2.95 9.32 22.27 0.21 -2.74 16 20 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 21 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 22 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 23 C -0.13 -3.80 9.67 22.27 0.22 -3.59 16 24 H 0.03 1.52 7.80 -2.38 -0.02 1.51 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 2.21 7.78 -2.39 -0.02 2.19 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 1.38 7.06 -2.39 -0.02 1.36 16 31 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.03 1.19 7.58 -2.39 -0.02 1.17 16 33 H 0.05 3.00 5.56 -2.38 -0.01 2.99 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.38 9.13 7.50 -74.06 -0.56 8.57 16 37 H 0.13 2.67 6.78 -2.91 -0.02 2.65 16 38 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.12 3.29 8.04 -2.92 -0.02 3.27 16 Total: -1.00 -64.70 334.36 3.50 -61.21 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.44 Total: 22.17 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: 4.27 Total: -25.95 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -1.35 Total: -84.55 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -1.90 Total: -19.95 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.70 3.50 -61.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310101021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.913 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds