Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00096 * 2 1 4 4 H 1.08997 * 109.46676 * 0.08145 * 3 2 1 5 5 C 1.53002 * 109.47415 * 120.08186 * 3 2 1 6 6 N 1.46504 * 109.46945 * 299.99878 * 5 3 2 7 7 C 1.38857 * 119.99594 * 179.97438 * 6 5 3 8 8 C 1.39558 * 119.84269 * 359.72926 * 7 6 5 9 9 C 1.36347 * 120.15637 * 179.71724 * 8 7 6 10 10 C 1.40885 * 119.83483 * 0.55302 * 9 8 7 11 11 C 1.41136 * 120.14944 * 179.70117 * 10 9 8 12 12 H 1.08005 * 119.99876 * 205.89145 * 11 10 9 13 13 C 1.39866 * 120.00418 * 25.89681 * 11 10 9 14 14 N 1.30897 * 120.00177 * 13.82527 * 13 11 10 15 15 Si 1.86805 * 120.00023 * 193.83190 * 13 11 10 16 16 H 1.48507 * 109.47052 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47331 * 119.99621 * 15 13 11 18 18 H 1.48495 * 109.46872 * 239.99855 * 15 13 11 19 19 C 1.40875 * 119.68924 * 359.72105 * 10 9 8 20 20 C 1.36340 * 119.84260 * 0.02562 * 19 10 9 21 21 C 1.53001 * 109.46774 * 240.08462 * 3 2 1 22 22 C 1.52998 * 109.47136 * 303.06206 * 21 3 2 23 23 C 1.52999 * 109.47369 * 63.06547 * 21 3 2 24 24 H 1.09003 * 109.46864 * 295.40558 * 1 2 3 25 25 H 1.09000 * 109.46662 * 175.40841 * 1 2 3 26 26 H 1.08993 * 109.47090 * 55.40539 * 1 2 3 27 27 H 1.09001 * 109.46959 * 59.99866 * 5 3 2 28 28 H 1.08991 * 109.46841 * 180.02562 * 5 3 2 29 29 H 0.96998 * 119.99842 * 0.02562 * 6 5 3 30 30 H 1.08002 * 119.92371 * 359.97438 * 8 7 6 31 31 H 1.07997 * 120.07875 * 180.27838 * 9 8 7 32 32 H 0.97006 * 120.00213 * 180.02562 * 14 13 11 33 33 H 1.08008 * 120.07865 * 179.97438 * 19 10 9 34 34 H 1.07992 * 119.92457 * 179.97438 * 20 19 10 35 35 H 1.09004 * 109.46441 * 183.06715 * 21 3 2 36 36 H 1.09004 * 109.47297 * 60.00390 * 22 21 3 37 37 H 1.09003 * 109.47226 * 180.02562 * 22 21 3 38 38 H 1.08999 * 109.47221 * 300.00714 * 22 21 3 39 39 H 1.08995 * 109.46843 * 55.30337 * 23 21 3 40 40 H 1.08998 * 109.47007 * 175.29950 * 23 21 3 41 41 H 1.08993 * 109.47018 * 295.30033 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2192 2.0553 0.0015 5 6 2.8782 1.4774 1.2482 6 7 2.0502 1.3115 2.4454 7 6 2.6219 1.4238 3.7058 8 6 3.9865 1.6891 3.8283 9 6 4.5534 1.8064 5.0628 10 6 3.7602 1.6475 6.2163 11 6 4.3413 1.7612 7.4974 12 1 3.8941 1.2550 8.3401 13 6 5.4963 2.5296 7.6758 14 7 5.8855 3.3540 6.7365 15 14 6.4836 2.3793 9.2545 16 1 5.8370 1.3867 10.1501 17 1 7.8634 1.9333 8.9349 18 1 6.5347 3.6988 9.9338 19 6 2.3845 1.3741 6.0848 20 6 1.8300 1.2646 4.8441 21 6 2.8749 1.4787 -1.2503 22 6 3.9380 0.3792 -1.2915 23 6 1.9935 1.3828 -2.4973 24 1 -0.3633 0.4409 0.9283 25 1 -0.3633 -1.0244 -0.0823 26 1 -0.3633 0.5834 -0.8459 27 1 3.6693 0.7274 1.2467 28 1 3.3212 2.4732 1.2483 29 1 1.1029 1.1225 2.3575 30 1 4.5943 1.8059 2.9432 31 1 5.6087 2.0162 5.1562 32 1 6.6868 3.8867 6.8600 33 1 1.7706 1.2507 6.9649 34 1 0.7757 1.0547 4.7418 35 1 3.3614 2.4537 -1.2233 36 1 3.4515 -0.5959 -1.3185 37 1 4.5543 0.5028 -2.1821 38 1 4.5659 0.4474 -0.4032 39 1 1.1859 2.1115 -2.4281 40 1 2.5939 1.5889 -3.3833 41 1 1.5729 0.3799 -2.5686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310230221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = -37.363602 kcal Electronic energy + Delta-G solvation = -19682.342479 eV Core-core repulsion = 16754.474644 eV Total energy + Delta-G solvation = -2927.867835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.14296 -37.67071 -35.01889 -34.56937 -32.81169 -29.62826 -29.39247 -27.83128 -27.12014 -26.25642 -24.24980 -22.87210 -21.00413 -19.94820 -19.85279 -17.16093 -16.78793 -16.31287 -15.59865 -15.21605 -14.88009 -14.21338 -14.09759 -13.81207 -13.71842 -13.25474 -12.96213 -12.61643 -12.42907 -12.16560 -12.05321 -11.73362 -11.61493 -11.54824 -11.26632 -11.08888 -11.00607 -10.78915 -10.77755 -10.58753 -10.38050 -9.64951 -9.45726 -9.23210 -9.20846 -8.47423 -7.44596 -6.55573 -6.32392 -4.00215 2.94305 3.14522 3.18256 3.23643 3.38797 3.74438 4.09463 4.23168 4.73012 4.83057 4.88715 4.92277 5.14080 5.19692 5.35009 5.45691 5.53635 5.61775 5.63537 5.76876 5.82552 5.84365 5.93687 6.03238 6.06073 6.26636 6.31464 6.35174 6.38716 6.98011 6.98184 7.19518 7.24818 7.40832 7.60068 7.74263 7.90152 8.20185 8.34238 8.54176 8.75461 8.84918 9.11347 9.20001 10.44191 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036404 B = 0.003849 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.962551 B = 7272.894854 C = 7823.808792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.084 3.916 4 H 0.064 0.936 5 C 0.129 3.871 6 N -0.757 5.757 7 C 0.098 3.902 8 C -0.167 4.167 9 C -0.120 4.120 10 C 0.071 3.929 11 C -0.465 4.465 12 H 0.072 0.928 13 C 0.072 3.928 14 N -0.814 5.814 15 Si 0.904 3.096 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.278 1.278 19 C -0.184 4.184 20 C -0.163 4.163 21 C -0.103 4.103 22 C -0.144 4.144 23 C -0.144 4.144 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.381 0.619 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.274 0.726 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 -2.651 -14.765 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.026 3.974 4 H 0.082 0.918 5 C 0.003 3.997 6 N -0.393 5.393 7 C 0.000 4.000 8 C -0.188 4.188 9 C -0.140 4.140 10 C 0.068 3.932 11 C -0.497 4.497 12 H 0.090 0.910 13 C -0.142 4.142 14 N -0.442 5.442 15 Si 0.730 3.270 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.203 1.203 19 C -0.204 4.204 20 C -0.185 4.185 21 C -0.122 4.122 22 C -0.201 4.201 23 C -0.202 4.202 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.213 0.787 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.438 -2.610 -14.893 16.068 hybrid contribution -0.097 0.277 0.674 0.735 sum -5.535 -2.333 -14.219 15.436 Atomic orbital electron populations 1.22826 0.81701 1.02430 0.99628 1.87949 1.18909 1.27298 1.94903 1.22455 0.95519 0.85048 0.94418 0.91818 1.21406 0.94068 1.00300 0.83927 1.43746 1.09367 1.84148 1.02051 1.17377 0.92694 1.06129 0.83753 1.20104 0.92599 1.08899 0.97245 1.21016 1.00122 1.02098 0.90762 1.17501 0.90357 0.91919 0.93432 1.19402 1.08290 1.27095 0.94910 0.91024 1.25782 0.97141 0.93493 0.97784 1.69839 1.22084 1.18623 1.33636 0.86334 0.79786 0.78730 0.82192 1.18714 1.20036 1.20320 1.20558 0.95005 1.10092 0.94729 1.19788 0.96871 1.09614 0.92227 1.21378 0.96585 1.00152 0.94089 1.21784 0.97926 0.98952 1.01489 1.21795 0.99345 1.01955 0.97072 0.94193 0.89915 0.94360 0.92371 0.92671 0.78679 0.89444 0.86046 0.91503 0.89099 0.89751 0.90226 0.91834 0.93161 0.92155 0.93197 0.92648 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.60 101.05 1.07 1.38 16 2 O -0.37 -4.77 8.83 -35.23 -0.31 -5.08 16 3 C 0.08 1.03 2.03 -26.73 -0.05 0.97 16 4 H 0.06 0.73 7.60 -51.93 -0.39 0.34 16 5 C 0.13 2.00 4.30 -4.04 -0.02 1.98 16 6 N -0.76 -13.78 5.59 -58.50 -0.33 -14.10 16 7 C 0.10 2.20 6.67 -83.69 -0.56 1.64 16 8 C -0.17 -4.01 9.23 -39.77 -0.37 -4.38 16 9 C -0.12 -3.22 8.62 -39.26 -0.34 -3.56 16 10 C 0.07 1.96 5.57 -106.80 -0.60 1.36 16 11 C -0.47 -12.89 9.05 -37.87 -0.34 -13.23 16 12 H 0.07 1.92 7.88 -52.48 -0.41 1.51 16 13 C 0.07 1.89 5.21 -17.34 -0.09 1.80 16 14 N -0.81 -21.95 10.80 55.54 0.60 -21.35 16 15 Si 0.90 19.58 29.58 -169.99 -5.03 14.56 16 16 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 C -0.18 -4.66 9.74 -39.27 -0.38 -5.04 16 20 C -0.16 -3.77 9.82 -39.77 -0.39 -4.16 16 21 C -0.10 -1.08 2.77 -90.62 -0.25 -1.33 16 22 C -0.14 -1.57 8.73 37.16 0.32 -1.24 16 23 C -0.14 -1.28 9.02 37.16 0.34 -0.95 16 24 H 0.04 0.40 7.26 -51.93 -0.38 0.02 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.97 6.28 -51.93 -0.33 0.64 16 28 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16 29 H 0.38 6.29 7.35 -40.82 -0.30 5.99 16 30 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 31 H 0.12 3.38 6.10 -52.49 -0.32 3.06 16 32 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 33 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 34 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.74 7.60 -51.93 -0.39 0.34 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.71 6.51 -51.93 -0.34 0.37 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -29.11 329.85 -8.31 -37.42 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.55 Total: 8.34 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -1.66 Total: -24.75 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.27 Total: -35.45 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.31 Total: -5.08 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.11 -8.31 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310230221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.053 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds