Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00096 * 2 1 4 4 H 1.08997 * 109.46676 * 0.08145 * 3 2 1 5 5 C 1.53002 * 109.47415 * 120.08186 * 3 2 1 6 6 N 1.46504 * 109.46945 * 299.99878 * 5 3 2 7 7 C 1.38857 * 119.99594 * 179.97438 * 6 5 3 8 8 C 1.39558 * 119.84269 * 359.72926 * 7 6 5 9 9 C 1.36347 * 120.15637 * 179.71724 * 8 7 6 10 10 C 1.40885 * 119.83483 * 0.55302 * 9 8 7 11 11 C 1.41136 * 120.14944 * 179.70117 * 10 9 8 12 12 H 1.08005 * 119.99876 * 205.89145 * 11 10 9 13 13 C 1.39866 * 120.00418 * 25.89681 * 11 10 9 14 14 N 1.30897 * 120.00177 * 13.82527 * 13 11 10 15 15 Si 1.86805 * 120.00023 * 193.83190 * 13 11 10 16 16 H 1.48507 * 109.47052 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47331 * 119.99621 * 15 13 11 18 18 H 1.48495 * 109.46872 * 239.99855 * 15 13 11 19 19 C 1.40875 * 119.68924 * 359.72105 * 10 9 8 20 20 C 1.36340 * 119.84260 * 0.02562 * 19 10 9 21 21 C 1.53001 * 109.46774 * 240.08462 * 3 2 1 22 22 C 1.52998 * 109.47136 * 303.06206 * 21 3 2 23 23 C 1.52999 * 109.47369 * 63.06547 * 21 3 2 24 24 H 1.09003 * 109.46864 * 295.40558 * 1 2 3 25 25 H 1.09000 * 109.46662 * 175.40841 * 1 2 3 26 26 H 1.08993 * 109.47090 * 55.40539 * 1 2 3 27 27 H 1.09001 * 109.46959 * 59.99866 * 5 3 2 28 28 H 1.08991 * 109.46841 * 180.02562 * 5 3 2 29 29 H 0.96998 * 119.99842 * 0.02562 * 6 5 3 30 30 H 1.08002 * 119.92371 * 359.97438 * 8 7 6 31 31 H 1.07997 * 120.07875 * 180.27838 * 9 8 7 32 32 H 0.97006 * 120.00213 * 180.02562 * 14 13 11 33 33 H 1.08008 * 120.07865 * 179.97438 * 19 10 9 34 34 H 1.07992 * 119.92457 * 179.97438 * 20 19 10 35 35 H 1.09004 * 109.46441 * 183.06715 * 21 3 2 36 36 H 1.09004 * 109.47297 * 60.00390 * 22 21 3 37 37 H 1.09003 * 109.47226 * 180.02562 * 22 21 3 38 38 H 1.08999 * 109.47221 * 300.00714 * 22 21 3 39 39 H 1.08995 * 109.46843 * 55.30337 * 23 21 3 40 40 H 1.08998 * 109.47007 * 175.29950 * 23 21 3 41 41 H 1.08993 * 109.47018 * 295.30033 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2192 2.0553 0.0015 5 6 2.8782 1.4774 1.2482 6 7 2.0502 1.3115 2.4454 7 6 2.6219 1.4238 3.7058 8 6 3.9865 1.6891 3.8283 9 6 4.5534 1.8064 5.0628 10 6 3.7602 1.6475 6.2163 11 6 4.3413 1.7612 7.4974 12 1 3.8941 1.2550 8.3401 13 6 5.4963 2.5296 7.6758 14 7 5.8855 3.3540 6.7365 15 14 6.4836 2.3793 9.2545 16 1 5.8370 1.3867 10.1501 17 1 7.8634 1.9333 8.9349 18 1 6.5347 3.6988 9.9338 19 6 2.3845 1.3741 6.0848 20 6 1.8300 1.2646 4.8441 21 6 2.8749 1.4787 -1.2503 22 6 3.9380 0.3792 -1.2915 23 6 1.9935 1.3828 -2.4973 24 1 -0.3633 0.4409 0.9283 25 1 -0.3633 -1.0244 -0.0823 26 1 -0.3633 0.5834 -0.8459 27 1 3.6693 0.7274 1.2467 28 1 3.3212 2.4732 1.2483 29 1 1.1029 1.1225 2.3575 30 1 4.5943 1.8059 2.9432 31 1 5.6087 2.0162 5.1562 32 1 6.6868 3.8867 6.8600 33 1 1.7706 1.2507 6.9649 34 1 0.7757 1.0547 4.7418 35 1 3.3614 2.4537 -1.2233 36 1 3.4515 -0.5959 -1.3185 37 1 4.5543 0.5028 -2.1821 38 1 4.5659 0.4474 -0.4032 39 1 1.1859 2.1115 -2.4281 40 1 2.5939 1.5889 -3.3833 41 1 1.5729 0.3799 -2.5686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310230221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = -53.564058 kcal Electronic energy + Delta-G solvation = -19683.044984 eV Core-core repulsion = 16754.474644 eV Total energy + Delta-G solvation = -2928.570340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28372 -39.36483 -36.50506 -35.66874 -34.59924 -31.36086 -31.17103 -29.22582 -27.97057 -27.26823 -25.95535 -24.22572 -22.79402 -21.65360 -20.89956 -19.14902 -18.05952 -17.50518 -16.89512 -16.74077 -16.30139 -15.72729 -15.26152 -15.04494 -14.84794 -14.52789 -14.41055 -14.14048 -13.88735 -13.69546 -13.42600 -13.14366 -12.92012 -12.75235 -12.67143 -12.54289 -12.32956 -12.22083 -12.01184 -11.59933 -11.57450 -11.51234 -11.16878 -11.08315 -10.40468 -10.27859 -9.40724 -8.50226 -8.15402 -6.01902 1.10343 1.18759 1.40761 1.55306 1.58048 2.28593 2.82430 2.85506 2.88807 3.79658 3.85414 3.97039 4.01091 4.27118 4.42682 4.43909 4.49325 4.56335 4.60645 4.69208 4.73096 4.84846 4.87824 4.91439 5.03093 5.04219 5.08752 5.14151 5.23213 5.28542 5.43530 5.46435 5.49967 5.68981 5.80157 5.97267 6.19605 6.30712 6.39332 6.67230 6.86967 7.09554 7.13891 7.29902 8.51438 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036404 B = 0.003849 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.962551 B = 7272.894854 C = 7823.808792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.391 6.391 3 C 0.092 3.908 4 H 0.077 0.923 5 C 0.124 3.876 6 N -0.747 5.747 7 C 0.114 3.886 8 C -0.177 4.177 9 C -0.139 4.139 10 C 0.032 3.968 11 C -0.504 4.504 12 H 0.067 0.933 13 C 0.029 3.971 14 N -0.846 5.846 15 Si 0.979 3.021 16 H -0.261 1.261 17 H -0.267 1.267 18 H -0.268 1.268 19 C -0.192 4.192 20 C -0.169 4.169 21 C -0.102 4.102 22 C -0.143 4.143 23 C -0.139 4.139 24 H 0.039 0.961 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.393 0.607 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.281 0.719 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -2.655 -16.104 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.034 3.966 4 H 0.095 0.905 5 C -0.001 4.001 6 N -0.382 5.382 7 C 0.014 3.986 8 C -0.199 4.199 9 C -0.160 4.160 10 C 0.029 3.971 11 C -0.535 4.535 12 H 0.085 0.915 13 C -0.182 4.182 14 N -0.475 5.475 15 Si 0.801 3.199 16 H -0.185 1.185 17 H -0.192 1.192 18 H -0.194 1.194 19 C -0.212 4.212 20 C -0.191 4.191 21 C -0.121 4.121 22 C -0.200 4.200 23 C -0.196 4.196 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.227 0.773 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.437 -2.622 -16.277 17.699 hybrid contribution 0.086 0.240 0.929 0.963 sum -6.351 -2.382 -15.348 16.780 Atomic orbital electron populations 1.23005 0.80222 1.03577 1.00376 1.87934 1.20599 1.27491 1.94940 1.22376 0.95565 0.85397 0.93283 0.90546 1.21577 0.94337 0.99811 0.84367 1.43797 1.10231 1.82845 1.01321 1.17498 0.92103 1.03456 0.85527 1.20246 0.93749 1.09094 0.96846 1.20939 0.99432 1.03719 0.91875 1.17828 0.91641 0.93716 0.93874 1.19630 1.10151 1.28683 0.95083 0.91467 1.26617 0.97636 0.92556 1.01408 1.69907 1.22722 1.19237 1.35643 0.85207 0.78075 0.78927 0.77700 1.18476 1.19175 1.19350 1.20774 0.94453 1.09823 0.96162 1.20088 0.98503 1.08977 0.91517 1.21401 0.96468 1.00221 0.94023 1.21758 0.98037 0.98719 1.01468 1.21746 0.99414 1.02002 0.96460 0.94266 0.88891 0.92547 0.93576 0.92759 0.77323 0.87922 0.87960 0.90866 0.88401 0.86578 0.89508 0.92803 0.91664 0.93711 0.92261 0.91517 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.60 113.37 1.20 1.62 16 2 O -0.39 -9.14 8.83 -148.98 -1.32 -10.45 16 3 C 0.09 2.04 2.03 30.60 0.06 2.10 16 4 H 0.08 1.51 7.60 -2.39 -0.02 1.49 16 5 C 0.12 3.67 4.30 86.38 0.37 4.04 16 6 N -0.75 -25.74 5.59 -338.99 -1.90 -27.64 16 7 C 0.11 5.01 6.67 38.67 0.26 5.27 16 8 C -0.18 -8.61 9.23 22.15 0.20 -8.40 16 9 C -0.14 -7.74 8.62 22.48 0.19 -7.55 16 10 C 0.03 1.84 5.57 -21.27 -0.12 1.72 16 11 C -0.50 -28.87 9.05 23.38 0.21 -28.66 16 12 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 13 C 0.03 1.54 5.21 85.23 0.44 1.98 16 14 N -0.85 -46.95 10.80 21.82 0.24 -46.72 16 15 Si 0.98 40.83 29.58 68.60 2.03 42.86 16 16 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 19 C -0.19 -9.83 9.74 22.47 0.22 -9.61 16 20 C -0.17 -7.61 9.82 22.15 0.22 -7.39 16 21 C -0.10 -1.90 2.77 -10.79 -0.03 -1.93 16 22 C -0.14 -2.90 8.73 71.98 0.63 -2.27 16 23 C -0.14 -2.06 9.02 71.98 0.65 -1.41 16 24 H 0.04 0.67 7.26 -2.39 -0.02 0.65 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 1.50 6.28 -2.39 -0.01 1.49 16 28 H 0.05 1.64 7.94 -2.39 -0.02 1.62 16 29 H 0.39 11.90 7.35 -92.71 -0.68 11.22 16 30 H 0.10 4.55 6.68 -2.91 -0.02 4.53 16 31 H 0.10 5.97 6.10 -2.91 -0.02 5.95 16 32 H 0.28 14.15 8.30 -92.70 -0.77 13.38 16 33 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 34 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.19 7.60 -2.39 -0.02 1.17 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.04 1.03 6.51 -2.39 -0.02 1.02 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.05 0.88 7.90 -2.39 -0.02 0.86 16 Total: -1.00 -63.75 329.85 3.89 -59.86 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.32 Total: 32.58 kcal Atomic # 6 Polarization: -55.00 SS G_CDS: 4.51 Total: -50.49 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.66 Total: -74.36 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.32 Total: -10.45 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -63.75 3.89 -59.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310230221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.296 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds