Wall clock time and date at job start Mon Mar 30 2020 06:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47277 * 2 1 4 4 H 1.08993 * 109.47659 * 54.99383 * 3 2 1 5 5 C 1.52999 * 109.47133 * 175.00095 * 3 2 1 6 6 N 1.46903 * 109.47186 * 184.99613 * 5 3 2 7 7 C 1.46902 * 111.00283 * 179.97438 * 6 5 3 8 8 H 1.09008 * 109.46792 * 34.99613 * 7 6 5 9 9 C 1.50697 * 109.47258 * 275.00184 * 7 6 5 10 10 H 1.08007 * 119.99892 * 294.98025 * 9 7 6 11 11 C 1.37877 * 120.00464 * 114.97372 * 9 7 6 12 12 N 1.31507 * 120.00390 * 184.83762 * 11 9 7 13 13 Si 1.86807 * 119.99540 * 4.83725 * 11 9 7 14 14 H 1.48502 * 109.47020 * 84.70062 * 13 11 9 15 15 H 1.48497 * 109.46958 * 204.69629 * 13 11 9 16 16 H 1.48497 * 109.47006 * 324.69900 * 13 11 9 17 17 C 1.50700 * 109.47276 * 154.99982 * 7 6 5 18 18 C 1.38234 * 119.99797 * 44.79490 * 17 7 6 19 19 C 1.38234 * 119.99526 * 179.79048 * 18 17 7 20 20 C 1.38234 * 119.99972 * 0.44040 * 19 18 17 21 21 C 1.38236 * 120.00215 * 359.81403 * 20 19 18 22 22 C 1.38233 * 119.99890 * 359.97438 * 21 20 19 23 23 O 1.42899 * 109.46761 * 294.99470 * 3 2 1 24 24 C 1.42904 * 114.00079 * 150.00276 * 23 3 2 25 25 H 1.08999 * 109.47506 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47281 * 300.00720 * 1 2 3 27 27 H 1.09002 * 109.47184 * 60.00420 * 1 2 3 28 28 H 1.08999 * 109.47281 * 239.99280 * 2 1 3 29 29 H 1.09004 * 109.46927 * 119.99111 * 2 1 3 30 30 H 1.09000 * 109.46840 * 304.99211 * 5 3 2 31 31 H 1.08991 * 109.47648 * 64.99116 * 5 3 2 32 32 H 1.00905 * 111.00232 * 56.04289 * 6 5 3 33 33 H 0.97000 * 120.00084 * 180.02562 * 12 11 9 34 34 H 1.07998 * 120.00169 * 0.02562 * 18 17 7 35 35 H 1.08002 * 119.99774 * 180.27612 * 19 18 17 36 36 H 1.08004 * 119.99804 * 179.83713 * 20 19 18 37 37 H 1.08004 * 119.99881 * 180.02562 * 21 20 19 38 38 H 1.07995 * 119.99861 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.46924 * 59.99948 * 24 23 3 40 40 H 1.08999 * 109.46786 * 180.02562 * 24 23 3 41 41 H 1.08996 * 109.47147 * 300.00075 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4443 0.1257 6 7 4.0446 2.8275 0.2460 7 6 5.5079 2.8684 0.3695 8 1 5.9457 2.0724 -0.2330 9 6 5.8957 2.6767 1.8131 10 1 5.6197 3.4172 2.5493 11 6 6.6027 1.5560 2.1941 12 7 6.8587 1.3408 3.4659 13 14 7.1971 0.3432 0.9035 14 1 8.4944 0.8065 0.3491 15 1 7.3736 -0.9939 1.5249 16 1 6.1956 0.2529 -0.1893 17 6 6.0158 4.2021 -0.1142 18 6 5.3779 5.3661 0.2720 19 6 5.8465 6.5898 -0.1682 20 6 6.9474 6.6489 -1.0021 21 6 7.5821 5.4847 -1.3926 22 6 7.1162 4.2612 -0.9488 23 8 1.6620 2.0812 -1.2211 24 6 1.4560 3.4902 -1.1005 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8570 0.8800 1.0114 31 1 4.0030 0.9834 -0.7595 32 1 3.6033 3.2971 1.0224 33 1 7.3565 0.5526 3.7339 34 1 4.5158 5.3196 0.9208 35 1 5.3508 7.4994 0.1371 36 1 7.3119 7.6049 -1.3482 37 1 8.4425 5.5310 -2.0438 38 1 7.6123 3.3517 -1.2535 39 1 2.3770 3.9643 -0.7612 40 1 1.1717 3.9000 -2.0697 41 1 0.6619 3.6808 -0.3787 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310521826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:48 Heat of formation + Delta-G solvation = -31.262629 kcal Electronic energy + Delta-G solvation = -20360.028421 eV Core-core repulsion = 17432.425143 eV Total energy + Delta-G solvation = -2927.603277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.73129 -38.07593 -35.31711 -33.37100 -32.24308 -30.77257 -30.18693 -27.97129 -26.56777 -25.31181 -23.04542 -22.27309 -21.52873 -20.71499 -19.69835 -17.29904 -16.42683 -16.26742 -15.15247 -14.93168 -14.76594 -14.25250 -14.22212 -13.68754 -13.46955 -13.08178 -12.82737 -12.69988 -12.63620 -12.46050 -12.11243 -11.92793 -11.60961 -11.36866 -11.09170 -10.99751 -10.79199 -10.76427 -10.46699 -10.39637 -10.18424 -9.84604 -9.40280 -9.06895 -8.75173 -8.22792 -7.93909 -7.29925 -6.28579 -4.31167 2.10323 2.17398 3.15007 3.22457 3.24679 4.22338 4.24063 4.52128 4.87630 5.10900 5.26304 5.38639 5.46749 5.52702 5.56152 5.62006 5.70343 5.73368 5.87938 5.93396 6.00384 6.09127 6.12452 6.20057 6.24787 6.29990 6.35577 6.40602 6.44830 6.49834 6.63941 6.73625 6.83590 7.13598 7.21938 7.36781 7.51910 7.68666 7.75436 7.95632 8.20329 8.46906 8.76472 9.33237 10.83682 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.008169 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.844394 B = 3426.817578 C = 4886.660431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.094 3.906 4 H 0.055 0.945 5 C 0.042 3.958 6 N -0.681 5.681 7 C 0.201 3.799 8 H 0.054 0.946 9 C -0.535 4.535 10 H 0.077 0.923 11 C 0.081 3.919 12 N -0.887 5.887 13 Si 0.868 3.132 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.259 1.259 17 C -0.014 4.014 18 C -0.105 4.105 19 C -0.125 4.125 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.132 4.132 23 O -0.381 6.381 24 C 0.030 3.970 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.329 0.671 33 H 0.267 0.733 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 2.751 -7.635 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.036 3.964 4 H 0.073 0.927 5 C -0.088 4.088 6 N -0.311 5.311 7 C 0.093 3.907 8 H 0.072 0.928 9 C -0.573 4.573 10 H 0.095 0.905 11 C -0.124 4.124 12 N -0.524 5.524 13 Si 0.695 3.305 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.184 1.184 17 C -0.015 4.015 18 C -0.124 4.124 19 C -0.143 4.143 20 C -0.169 4.169 21 C -0.140 4.140 22 C -0.151 4.151 23 O -0.300 6.300 24 C -0.067 4.067 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.346 2.617 -8.351 11.426 hybrid contribution 0.778 -0.809 0.725 1.336 sum -6.568 1.808 -7.626 10.225 Atomic orbital electron populations 1.21697 0.95702 1.01083 1.01895 1.21593 0.96130 0.95606 1.02683 1.22180 0.94212 0.93055 0.86932 0.92668 1.22374 0.93639 0.92035 1.00755 1.61139 1.07995 1.14041 1.47919 1.18706 0.85646 0.90528 0.95812 0.92809 1.21503 1.36896 1.07328 0.91619 0.90489 1.25106 0.94813 0.97413 0.95084 1.69892 1.39252 1.28042 1.15202 0.87030 0.80164 0.80914 0.82409 1.19777 1.21238 1.18403 1.20241 0.93174 0.96539 0.91508 1.20813 0.99917 0.91686 0.99945 1.21016 0.97162 0.97383 0.98749 1.20841 0.97756 0.97438 1.00878 1.20932 0.99643 0.92827 1.00607 1.20939 0.97766 0.97176 0.99193 1.87789 1.89299 1.20641 1.32291 1.22843 1.00827 0.82275 1.00737 0.93115 0.93176 0.92208 0.91305 0.90767 0.93885 0.91612 0.85427 0.92341 0.86815 0.87284 0.87420 0.87277 0.87334 0.90934 0.91198 0.95656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.81 37.16 0.36 -1.38 16 2 C -0.12 -1.70 5.64 -26.73 -0.15 -1.85 16 3 C 0.09 1.51 2.41 -26.73 -0.06 1.45 16 4 H 0.06 0.86 7.79 -51.93 -0.40 0.45 16 5 C 0.04 0.80 5.14 -3.82 -0.02 0.78 16 6 N -0.68 -13.48 3.82 -109.19 -0.42 -13.90 16 7 C 0.20 4.51 2.15 -70.02 -0.15 4.36 16 8 H 0.05 1.27 3.98 -51.92 -0.21 1.06 16 9 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 10 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 11 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 12 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 13 Si 0.87 20.56 27.25 -169.99 -4.63 15.93 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.26 -5.85 6.31 56.52 0.36 -5.50 16 17 C -0.01 -0.29 4.93 -104.62 -0.52 -0.80 16 18 C -0.11 -2.01 9.28 -39.58 -0.37 -2.38 16 19 C -0.12 -2.11 10.05 -39.58 -0.40 -2.50 16 20 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 21 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 22 C -0.13 -2.62 9.67 -39.58 -0.38 -3.01 16 23 O -0.38 -6.30 9.88 -35.23 -0.35 -6.65 16 24 C 0.03 0.43 10.69 101.05 1.08 1.51 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 31 H 0.07 1.32 7.98 -51.93 -0.41 0.91 16 32 H 0.33 6.40 7.83 -39.29 -0.31 6.09 16 33 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 34 H 0.11 2.09 7.42 -52.49 -0.39 1.70 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 38 H 0.11 2.10 8.00 -52.49 -0.42 1.68 16 39 H 0.07 1.13 6.20 -51.93 -0.32 0.81 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -28.56 333.70 -8.08 -36.64 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.69 Total: 9.43 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.79 Total: -21.39 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.36 Total: -38.99 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.35 Total: -6.65 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.63 Total: 15.93 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.56 -8.08 -36.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310521826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.375 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds