Wall clock time and date at job start Mon Mar 30 2020 06:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47277 * 2 1 4 4 H 1.08993 * 109.47659 * 54.99383 * 3 2 1 5 5 C 1.52999 * 109.47133 * 175.00095 * 3 2 1 6 6 N 1.46903 * 109.47186 * 184.99613 * 5 3 2 7 7 C 1.46902 * 111.00283 * 179.97438 * 6 5 3 8 8 H 1.09008 * 109.46792 * 34.99613 * 7 6 5 9 9 C 1.50697 * 109.47258 * 275.00184 * 7 6 5 10 10 H 1.08007 * 119.99892 * 294.98025 * 9 7 6 11 11 C 1.37877 * 120.00464 * 114.97372 * 9 7 6 12 12 N 1.31507 * 120.00390 * 184.83762 * 11 9 7 13 13 Si 1.86807 * 119.99540 * 4.83725 * 11 9 7 14 14 H 1.48502 * 109.47020 * 84.70062 * 13 11 9 15 15 H 1.48497 * 109.46958 * 204.69629 * 13 11 9 16 16 H 1.48497 * 109.47006 * 324.69900 * 13 11 9 17 17 C 1.50700 * 109.47276 * 154.99982 * 7 6 5 18 18 C 1.38234 * 119.99797 * 44.79490 * 17 7 6 19 19 C 1.38234 * 119.99526 * 179.79048 * 18 17 7 20 20 C 1.38234 * 119.99972 * 0.44040 * 19 18 17 21 21 C 1.38236 * 120.00215 * 359.81403 * 20 19 18 22 22 C 1.38233 * 119.99890 * 359.97438 * 21 20 19 23 23 O 1.42899 * 109.46761 * 294.99470 * 3 2 1 24 24 C 1.42904 * 114.00079 * 150.00276 * 23 3 2 25 25 H 1.08999 * 109.47506 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47281 * 300.00720 * 1 2 3 27 27 H 1.09002 * 109.47184 * 60.00420 * 1 2 3 28 28 H 1.08999 * 109.47281 * 239.99280 * 2 1 3 29 29 H 1.09004 * 109.46927 * 119.99111 * 2 1 3 30 30 H 1.09000 * 109.46840 * 304.99211 * 5 3 2 31 31 H 1.08991 * 109.47648 * 64.99116 * 5 3 2 32 32 H 1.00905 * 111.00232 * 56.04289 * 6 5 3 33 33 H 0.97000 * 120.00084 * 180.02562 * 12 11 9 34 34 H 1.07998 * 120.00169 * 0.02562 * 18 17 7 35 35 H 1.08002 * 119.99774 * 180.27612 * 19 18 17 36 36 H 1.08004 * 119.99804 * 179.83713 * 20 19 18 37 37 H 1.08004 * 119.99881 * 180.02562 * 21 20 19 38 38 H 1.07995 * 119.99861 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.46924 * 59.99948 * 24 23 3 40 40 H 1.08999 * 109.46786 * 180.02562 * 24 23 3 41 41 H 1.08996 * 109.47147 * 300.00075 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4443 0.1257 6 7 4.0446 2.8275 0.2460 7 6 5.5079 2.8684 0.3695 8 1 5.9457 2.0724 -0.2330 9 6 5.8957 2.6767 1.8131 10 1 5.6197 3.4172 2.5493 11 6 6.6027 1.5560 2.1941 12 7 6.8587 1.3408 3.4659 13 14 7.1971 0.3432 0.9035 14 1 8.4944 0.8065 0.3491 15 1 7.3736 -0.9939 1.5249 16 1 6.1956 0.2529 -0.1893 17 6 6.0158 4.2021 -0.1142 18 6 5.3779 5.3661 0.2720 19 6 5.8465 6.5898 -0.1682 20 6 6.9474 6.6489 -1.0021 21 6 7.5821 5.4847 -1.3926 22 6 7.1162 4.2612 -0.9488 23 8 1.6620 2.0812 -1.2211 24 6 1.4560 3.4902 -1.1005 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8570 0.8800 1.0114 31 1 4.0030 0.9834 -0.7595 32 1 3.6033 3.2971 1.0224 33 1 7.3565 0.5526 3.7339 34 1 4.5158 5.3196 0.9208 35 1 5.3508 7.4994 0.1371 36 1 7.3119 7.6049 -1.3482 37 1 8.4425 5.5310 -2.0438 38 1 7.6123 3.3517 -1.2535 39 1 2.3770 3.9643 -0.7612 40 1 1.1717 3.9000 -2.0697 41 1 0.6619 3.6808 -0.3787 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310521826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:47 Heat of formation + Delta-G solvation = -47.840618 kcal Electronic energy + Delta-G solvation = -20360.747296 eV Core-core repulsion = 17432.425143 eV Total energy + Delta-G solvation = -2928.322153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.19803 -39.39101 -36.93885 -34.66580 -34.13641 -32.23439 -31.58379 -29.40974 -28.11279 -26.71862 -24.60221 -23.71764 -22.89308 -22.04596 -21.27221 -19.29577 -17.76393 -17.67191 -16.73337 -16.41693 -16.33068 -15.66737 -15.59664 -15.03808 -14.89964 -14.67689 -14.31646 -14.05791 -14.01038 -13.91324 -13.79095 -13.41628 -12.96482 -12.92980 -12.76362 -12.26231 -12.15996 -11.97379 -11.89347 -11.81680 -11.73885 -11.48326 -11.23564 -10.88781 -10.33808 -9.63471 -9.43595 -8.97396 -8.40466 -6.45131 0.68653 0.75000 1.24121 1.26499 1.33663 2.21844 2.90085 3.01773 3.17436 3.48339 4.00074 4.14471 4.19458 4.22683 4.29861 4.38481 4.43364 4.53408 4.58055 4.62727 4.69315 4.81074 4.83852 4.89303 4.93074 4.94091 5.09337 5.11055 5.17141 5.22030 5.30389 5.39313 5.42619 5.44710 5.75545 5.79579 5.96954 6.03569 6.31248 6.39366 6.43591 6.61752 6.73111 7.22487 8.75488 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.008169 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.844394 B = 3426.817578 C = 4886.660431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.102 3.898 4 H 0.061 0.939 5 C 0.043 3.957 6 N -0.667 5.667 7 C 0.209 3.791 8 H 0.043 0.957 9 C -0.527 4.527 10 H 0.038 0.962 11 C 0.029 3.971 12 N -0.936 5.936 13 Si 0.923 3.077 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.246 1.246 17 C -0.047 4.047 18 C -0.120 4.120 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.155 4.155 23 O -0.392 6.392 24 C 0.027 3.973 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.330 0.670 33 H 0.267 0.733 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 3.929 -9.603 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.043 3.957 4 H 0.079 0.921 5 C -0.087 4.087 6 N -0.296 5.296 7 C 0.100 3.900 8 H 0.061 0.939 9 C -0.566 4.566 10 H 0.057 0.943 11 C -0.171 4.171 12 N -0.575 5.575 13 Si 0.748 3.252 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.170 1.170 17 C -0.048 4.048 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.161 4.161 21 C -0.139 4.139 22 C -0.174 4.174 23 O -0.311 6.311 24 C -0.069 4.069 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.906 3.809 -10.340 13.562 hybrid contribution 0.921 -1.007 1.321 1.899 sum -6.985 2.803 -9.019 11.747 Atomic orbital electron populations 1.21644 0.93794 1.02295 1.01983 1.21616 0.97772 0.93981 1.02676 1.22117 0.91756 0.94616 0.87176 0.92125 1.22431 0.96166 0.91047 0.99081 1.61140 1.06420 1.14501 1.47519 1.18533 0.86848 0.91582 0.93025 0.93932 1.21660 1.35879 1.05924 0.93149 0.94324 1.25820 0.95271 0.99330 0.96688 1.70024 1.41195 1.29096 1.17191 0.86129 0.80022 0.78672 0.80373 1.19221 1.21063 1.17022 1.20203 0.94702 0.96173 0.93741 1.20916 1.00172 0.92327 1.00386 1.21392 0.97283 0.97465 0.98000 1.21329 0.96650 0.98761 0.99313 1.21299 1.00309 0.92028 1.00312 1.21107 0.97804 0.98520 0.99922 1.87780 1.89114 1.21777 1.32447 1.22939 1.00641 0.81112 1.02222 0.91393 0.92636 0.92513 0.91524 0.90631 0.96092 0.92728 0.85323 0.92385 0.87135 0.84151 0.83541 0.84240 0.87744 0.92512 0.89519 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.81 71.98 0.71 -2.35 16 2 C -0.12 -3.29 5.64 30.59 0.17 -3.11 16 3 C 0.10 3.19 2.41 30.59 0.07 3.27 16 4 H 0.06 1.83 7.79 -2.39 -0.02 1.82 16 5 C 0.04 1.66 5.14 86.30 0.44 2.10 16 6 N -0.67 -26.88 3.82 -499.35 -1.91 -28.79 16 7 C 0.21 9.59 2.15 43.42 0.09 9.68 16 8 H 0.04 2.04 3.98 -2.38 -0.01 2.03 16 9 C -0.53 -28.76 8.60 25.60 0.22 -28.54 16 10 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 11 C 0.03 1.62 5.47 84.66 0.46 2.09 16 12 N -0.94 -56.71 13.96 21.45 0.30 -56.41 16 13 Si 0.92 43.43 27.25 68.60 1.87 45.30 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.25 -10.91 6.31 99.48 0.63 -10.28 16 17 C -0.05 -2.00 4.93 -19.87 -0.10 -2.10 16 18 C -0.12 -4.51 9.28 22.27 0.21 -4.31 16 19 C -0.12 -3.83 10.05 22.27 0.22 -3.60 16 20 C -0.14 -4.09 10.05 22.27 0.22 -3.87 16 21 C -0.12 -3.85 10.05 22.27 0.22 -3.62 16 22 C -0.15 -6.03 9.67 22.27 0.22 -5.82 16 23 O -0.39 -12.48 9.88 -148.98 -1.47 -13.95 16 24 C 0.03 0.74 10.69 113.37 1.21 1.95 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.28 7.82 -2.39 -0.02 1.26 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 31 H 0.05 2.21 7.98 -2.39 -0.02 2.20 16 32 H 0.33 13.21 7.83 -89.69 -0.70 12.51 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.11 4.10 7.42 -2.91 -0.02 4.08 16 35 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 36 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 38 H 0.10 4.02 8.00 -2.91 -0.02 4.00 16 39 H 0.06 1.73 6.20 -2.39 -0.01 1.71 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.00 8.08 -2.39 -0.02 0.98 16 Total: -1.00 -63.45 333.70 3.39 -60.06 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.21 Total: 32.03 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 4.38 Total: -38.24 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -1.61 Total: -85.20 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.47 Total: -13.95 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.87 Total: 45.30 kcal Total: -63.45 3.39 -60.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310521826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.221 kcal (2) G-P(sol) polarization free energy of solvation -63.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds