Wall clock time and date at job start Mon Mar 30 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.46299 * 113.99580 * 2 1 4 4 C 1.46896 * 111.00111 * 243.95268 * 3 2 1 5 5 C 1.53005 * 109.46923 * 66.05198 * 4 3 2 6 6 C 1.52995 * 109.47350 * 64.99904 * 5 4 3 7 7 C 1.53000 * 109.47064 * 185.00086 * 5 4 3 8 8 C 1.46900 * 110.99864 * 119.99913 * 3 2 1 9 9 H 1.09002 * 109.46998 * 63.95642 * 8 3 2 10 10 C 1.50704 * 109.47249 * 183.95354 * 8 3 2 11 11 H 1.08000 * 119.99621 * 54.79644 * 10 8 3 12 12 C 1.37874 * 119.99957 * 234.52798 * 10 8 3 13 13 N 1.31513 * 119.99983 * 183.97808 * 12 10 8 14 14 Si 1.86797 * 120.00000 * 3.97394 * 12 10 8 15 15 H 1.48501 * 109.47111 * 84.55310 * 14 12 10 16 16 H 1.48503 * 109.46912 * 204.54890 * 14 12 10 17 17 H 1.48501 * 109.47480 * 324.54537 * 14 12 10 18 18 C 1.50697 * 109.47344 * 303.95600 * 8 3 2 19 19 C 1.38235 * 119.99687 * 311.99344 * 18 8 3 20 20 C 1.38239 * 119.99992 * 179.81085 * 19 18 8 21 21 C 1.38235 * 119.99723 * 0.39726 * 20 19 18 22 22 C 1.38233 * 120.00165 * 359.85604 * 21 20 19 23 23 C 1.38233 * 120.00060 * 132.26821 * 18 8 3 24 24 H 1.09004 * 109.46517 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47427 * 299.99399 * 1 2 3 26 26 H 1.08999 * 109.46950 * 60.00233 * 1 2 3 27 27 H 1.09004 * 109.47230 * 186.04247 * 4 3 2 28 28 H 1.08996 * 109.47739 * 306.04652 * 4 3 2 29 29 H 1.09000 * 109.46841 * 304.99608 * 5 4 3 30 30 H 1.09002 * 109.47149 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47178 * 299.99707 * 6 5 4 32 32 H 1.09000 * 109.47390 * 60.00041 * 6 5 4 33 33 H 1.09006 * 109.47243 * 59.99078 * 7 5 4 34 34 H 1.08997 * 109.47245 * 179.97438 * 7 5 4 35 35 H 1.09002 * 109.47154 * 299.99969 * 7 5 4 36 36 H 0.97003 * 120.00590 * 179.97438 * 13 12 10 37 37 H 1.07999 * 120.00154 * 0.02562 * 19 18 8 38 38 H 1.07993 * 120.00253 * 180.23248 * 20 19 18 39 39 H 1.08000 * 120.00259 * 179.83530 * 21 20 19 40 40 H 1.08004 * 120.00490 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.00438 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0240 1.3366 0.0000 4 6 2.7882 1.5726 -1.2321 5 6 1.8333 1.5994 -2.4273 6 6 0.8904 2.7975 -2.3000 7 6 2.6398 1.7203 -3.7218 8 6 2.8645 1.5386 1.1877 9 1 3.7055 0.8457 1.1598 10 6 3.3806 2.9545 1.2030 11 1 2.6889 3.7819 1.1455 12 6 4.7353 3.1934 1.2959 13 7 5.1805 4.4275 1.3881 14 14 5.9383 1.7644 1.2908 15 1 6.2379 1.3745 -0.1104 16 1 7.1941 2.1722 1.9704 17 1 5.3394 0.6105 2.0086 18 6 2.0482 1.2881 2.4294 19 6 0.8005 1.8676 2.5648 20 6 0.0499 1.6346 3.7020 21 6 0.5506 0.8289 4.7075 22 6 1.8005 0.2537 4.5745 23 6 2.5494 0.4835 3.4355 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.3072 2.5285 -1.1603 28 1 3.5166 0.7730 -1.3668 29 1 1.2503 0.6786 -2.4472 30 1 0.2098 2.8162 -3.1513 31 1 0.3158 2.7113 -1.3779 32 1 1.4734 3.7182 -2.2802 33 1 3.3118 0.8668 -3.8124 34 1 1.9596 1.7389 -4.5733 35 1 3.2230 2.6411 -3.7019 36 1 6.1336 4.5957 1.4538 37 1 0.4105 2.4994 1.7805 38 1 -0.9264 2.0843 3.8062 39 1 -0.0346 0.6490 5.5972 40 1 2.1919 -0.3755 5.3602 41 1 3.5259 0.0340 3.3315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310560072.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:17 Heat of formation + Delta-G solvation = 16.686127 kcal Electronic energy + Delta-G solvation = -21040.022620 eV Core-core repulsion = 18114.498556 eV Total energy + Delta-G solvation = -2925.524063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.68828 -37.03029 -34.77457 -33.94882 -31.89856 -30.18258 -30.07655 -26.90534 -26.72451 -25.66509 -24.06055 -22.21565 -21.69580 -19.66219 -19.48378 -17.23372 -16.26017 -15.61664 -15.38625 -14.70648 -14.61786 -14.21452 -13.91569 -13.58077 -13.27129 -13.03667 -12.75537 -12.72088 -12.43419 -12.24089 -11.92036 -11.82687 -11.46680 -11.36264 -11.05415 -10.95478 -10.56782 -10.49818 -10.36845 -10.04573 -9.93395 -9.89162 -9.61938 -9.21851 -8.76336 -8.17160 -7.83942 -7.62646 -6.32530 -4.33195 2.13355 2.17735 3.12986 3.22280 3.24067 3.55433 4.19696 4.58820 5.07368 5.21108 5.42652 5.50369 5.54824 5.58553 5.69033 5.84437 5.98316 6.01514 6.02469 6.08913 6.14454 6.19585 6.26838 6.29185 6.31228 6.38886 6.41994 6.52106 6.56760 6.69103 6.77625 6.81020 6.87679 6.99688 7.16613 7.20754 7.27645 7.49518 7.76393 7.79872 7.97528 8.36494 8.78228 9.27486 10.78216 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.010335 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.026899 B = 2708.616464 C = 4001.750679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.289 6.289 3 N -0.345 5.345 4 C 0.050 3.950 5 C -0.089 4.089 6 C -0.135 4.135 7 C -0.145 4.145 8 C 0.197 3.803 9 H 0.027 0.973 10 C -0.493 4.493 11 H 0.087 0.913 12 C 0.083 3.917 13 N -0.877 5.877 14 Si 0.865 3.135 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.262 1.262 18 C -0.018 4.018 19 C -0.095 4.095 20 C -0.130 4.130 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.129 4.129 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.110 0.890 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.270 0.730 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 -6.385 -2.436 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.289 6.289 3 N -0.117 5.117 4 C -0.078 4.078 5 C -0.108 4.108 6 C -0.193 4.193 7 C -0.203 4.203 8 C 0.091 3.909 9 H 0.045 0.955 10 C -0.532 4.532 11 H 0.105 0.895 12 C -0.123 4.123 13 N -0.513 5.513 14 Si 0.692 3.308 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.187 1.187 18 C -0.019 4.019 19 C -0.113 4.113 20 C -0.148 4.148 21 C -0.165 4.165 22 C -0.143 4.143 23 C -0.148 4.148 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.128 0.872 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.399 -6.149 -2.409 9.918 hybrid contribution 1.354 -1.110 0.088 1.753 sum -6.045 -7.260 -2.321 9.728 Atomic orbital electron populations 1.22489 0.82666 0.99978 1.00019 1.90586 1.19145 1.22494 1.96710 1.68231 1.35836 1.04365 1.03285 1.22375 0.94452 1.02333 0.88610 1.21043 0.96833 0.99008 0.93909 1.21714 0.98841 0.97784 1.00943 1.21810 0.99825 1.01676 0.96973 1.19182 0.89719 0.97676 0.84308 0.95511 1.20653 0.92597 0.89154 1.50752 0.89450 1.25029 0.97950 0.95477 0.93807 1.69849 1.14950 1.19035 1.47492 0.87046 0.81065 0.83488 0.79235 1.19652 1.20905 1.18716 1.20089 0.93521 0.92018 0.96260 1.20887 0.94295 0.99115 0.97050 1.21032 0.99561 0.99537 0.94649 1.20843 0.96462 1.00299 0.98944 1.20909 0.95130 1.00720 0.97531 1.20995 0.99631 0.99650 0.94536 0.91481 0.93878 0.94711 0.87231 0.95416 0.91765 0.94320 0.91758 0.92713 0.93271 0.93145 0.92528 0.92022 0.86141 0.87246 0.87434 0.87331 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 11.25 101.05 1.14 1.89 16 2 O -0.29 -5.83 9.79 -13.92 -0.14 -5.96 16 3 N -0.34 -7.24 3.57 -109.19 -0.39 -7.63 16 4 C 0.05 1.01 4.50 -3.82 -0.02 0.99 16 5 C -0.09 -1.46 2.97 -90.62 -0.27 -1.73 16 6 C -0.14 -2.12 9.08 37.15 0.34 -1.78 16 7 C -0.14 -2.06 9.19 37.16 0.34 -1.71 16 8 C 0.20 4.60 1.91 -70.02 -0.13 4.46 16 9 H 0.03 0.67 4.33 -51.93 -0.22 0.44 16 10 C -0.49 -12.87 7.38 -34.44 -0.25 -13.13 16 11 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 12 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 13 N -0.88 -24.95 13.96 55.43 0.77 -24.17 16 14 Si 0.86 20.54 27.20 -169.99 -4.62 15.91 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.26 -6.10 6.13 56.52 0.35 -5.76 16 18 C -0.02 -0.39 4.31 -104.63 -0.45 -0.84 16 19 C -0.10 -1.90 7.28 -39.58 -0.29 -2.19 16 20 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 21 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 22 C -0.12 -2.22 10.05 -39.58 -0.40 -2.61 16 23 C -0.13 -2.68 9.67 -39.58 -0.38 -3.06 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.72 6.12 -51.93 -0.32 0.40 16 26 H 0.03 0.53 7.41 -51.93 -0.39 0.14 16 27 H 0.11 2.42 6.77 -51.93 -0.35 2.07 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.06 7.00 -51.93 -0.36 0.69 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.07 7.57 -51.93 -0.39 0.68 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.12 2.42 7.94 -52.49 -0.42 2.00 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.11 2.24 7.67 -52.49 -0.40 1.84 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -27.82 330.34 -7.36 -35.19 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.70 Total: 4.76 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -1.27 Total: -23.07 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.38 Total: -31.80 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.14 Total: -5.96 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.62 Total: 15.91 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.82 -7.36 -35.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310560072.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.874 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds