Wall clock time and date at job start Mon Mar 30 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.46299 * 113.99580 * 2 1 4 4 C 1.46896 * 111.00111 * 243.95268 * 3 2 1 5 5 C 1.53005 * 109.46923 * 66.05198 * 4 3 2 6 6 C 1.52995 * 109.47350 * 64.99904 * 5 4 3 7 7 C 1.53000 * 109.47064 * 185.00086 * 5 4 3 8 8 C 1.46900 * 110.99864 * 119.99913 * 3 2 1 9 9 H 1.09002 * 109.46998 * 63.95642 * 8 3 2 10 10 C 1.50704 * 109.47249 * 183.95354 * 8 3 2 11 11 H 1.08000 * 119.99621 * 54.79644 * 10 8 3 12 12 C 1.37874 * 119.99957 * 234.52798 * 10 8 3 13 13 N 1.31513 * 119.99983 * 183.97808 * 12 10 8 14 14 Si 1.86797 * 120.00000 * 3.97394 * 12 10 8 15 15 H 1.48501 * 109.47111 * 84.55310 * 14 12 10 16 16 H 1.48503 * 109.46912 * 204.54890 * 14 12 10 17 17 H 1.48501 * 109.47480 * 324.54537 * 14 12 10 18 18 C 1.50697 * 109.47344 * 303.95600 * 8 3 2 19 19 C 1.38235 * 119.99687 * 311.99344 * 18 8 3 20 20 C 1.38239 * 119.99992 * 179.81085 * 19 18 8 21 21 C 1.38235 * 119.99723 * 0.39726 * 20 19 18 22 22 C 1.38233 * 120.00165 * 359.85604 * 21 20 19 23 23 C 1.38233 * 120.00060 * 132.26821 * 18 8 3 24 24 H 1.09004 * 109.46517 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47427 * 299.99399 * 1 2 3 26 26 H 1.08999 * 109.46950 * 60.00233 * 1 2 3 27 27 H 1.09004 * 109.47230 * 186.04247 * 4 3 2 28 28 H 1.08996 * 109.47739 * 306.04652 * 4 3 2 29 29 H 1.09000 * 109.46841 * 304.99608 * 5 4 3 30 30 H 1.09002 * 109.47149 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47178 * 299.99707 * 6 5 4 32 32 H 1.09000 * 109.47390 * 60.00041 * 6 5 4 33 33 H 1.09006 * 109.47243 * 59.99078 * 7 5 4 34 34 H 1.08997 * 109.47245 * 179.97438 * 7 5 4 35 35 H 1.09002 * 109.47154 * 299.99969 * 7 5 4 36 36 H 0.97003 * 120.00590 * 179.97438 * 13 12 10 37 37 H 1.07999 * 120.00154 * 0.02562 * 19 18 8 38 38 H 1.07993 * 120.00253 * 180.23248 * 20 19 18 39 39 H 1.08000 * 120.00259 * 179.83530 * 21 20 19 40 40 H 1.08004 * 120.00490 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.00438 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0240 1.3366 0.0000 4 6 2.7882 1.5726 -1.2321 5 6 1.8333 1.5994 -2.4273 6 6 0.8904 2.7975 -2.3000 7 6 2.6398 1.7203 -3.7218 8 6 2.8645 1.5386 1.1877 9 1 3.7055 0.8457 1.1598 10 6 3.3806 2.9545 1.2030 11 1 2.6889 3.7819 1.1455 12 6 4.7353 3.1934 1.2959 13 7 5.1805 4.4275 1.3881 14 14 5.9383 1.7644 1.2908 15 1 6.2379 1.3745 -0.1104 16 1 7.1941 2.1722 1.9704 17 1 5.3394 0.6105 2.0086 18 6 2.0482 1.2881 2.4294 19 6 0.8005 1.8676 2.5648 20 6 0.0499 1.6346 3.7020 21 6 0.5506 0.8289 4.7075 22 6 1.8005 0.2537 4.5745 23 6 2.5494 0.4835 3.4355 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.3072 2.5285 -1.1603 28 1 3.5166 0.7730 -1.3668 29 1 1.2503 0.6786 -2.4472 30 1 0.2098 2.8162 -3.1513 31 1 0.3158 2.7113 -1.3779 32 1 1.4734 3.7182 -2.2802 33 1 3.3118 0.8668 -3.8124 34 1 1.9596 1.7389 -4.5733 35 1 3.2230 2.6411 -3.7019 36 1 6.1336 4.5957 1.4538 37 1 0.4105 2.4994 1.7805 38 1 -0.9264 2.0843 3.8062 39 1 -0.0346 0.6490 5.5972 40 1 2.1919 -0.3755 5.3602 41 1 3.5259 0.0340 3.3315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310560072.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:16 Heat of formation + Delta-G solvation = 1.925756 kcal Electronic energy + Delta-G solvation = -21040.662678 eV Core-core repulsion = 18114.498556 eV Total energy + Delta-G solvation = -2926.164121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.22206 -38.54869 -36.20675 -35.70929 -33.79916 -31.64442 -31.55718 -28.69246 -27.95726 -27.08697 -25.75971 -23.76721 -23.16674 -21.34809 -20.89068 -19.22205 -17.76349 -17.27847 -16.94846 -16.36853 -16.15344 -15.75533 -15.35660 -15.08425 -14.84848 -14.60257 -14.32656 -14.14339 -13.94738 -13.84218 -13.43061 -13.09860 -13.04461 -12.92736 -12.75830 -12.37457 -12.13976 -11.92436 -11.86238 -11.74154 -11.57925 -11.44372 -11.32745 -10.87997 -10.65224 -9.63408 -9.36532 -9.32711 -8.41296 -6.44158 0.65798 0.70933 1.21516 1.25077 1.32123 1.95846 2.20108 2.97142 3.15882 3.74829 4.09044 4.12068 4.17677 4.26860 4.32339 4.41774 4.49165 4.64015 4.70378 4.74219 4.79994 4.84210 4.86716 4.90476 4.93204 4.97050 5.07717 5.11813 5.15921 5.24064 5.26904 5.34774 5.38276 5.51321 5.61328 5.73121 5.76193 5.90612 6.02080 6.18722 6.34272 6.53715 6.63074 7.19321 8.73607 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.010335 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.026899 B = 2708.616464 C = 4001.750679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.297 6.297 3 N -0.343 5.343 4 C 0.050 3.950 5 C -0.082 4.082 6 C -0.130 4.130 7 C -0.141 4.141 8 C 0.202 3.798 9 H 0.009 0.991 10 C -0.484 4.484 11 H 0.049 0.951 12 C 0.038 3.962 13 N -0.923 5.923 14 Si 0.914 3.086 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.257 1.257 18 C -0.049 4.049 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.154 4.154 24 H 0.096 0.904 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.017 0.983 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.271 0.729 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.174 -8.342 -1.950 12.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.300 6.300 3 N -0.114 5.114 4 C -0.078 4.078 5 C -0.101 4.101 6 C -0.187 4.187 7 C -0.199 4.199 8 C 0.096 3.904 9 H 0.027 0.973 10 C -0.523 4.523 11 H 0.067 0.933 12 C -0.163 4.163 13 N -0.562 5.562 14 Si 0.739 3.261 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.181 1.181 18 C -0.050 4.050 19 C -0.127 4.127 20 C -0.143 4.143 21 C -0.154 4.154 22 C -0.140 4.140 23 C -0.172 4.172 24 H 0.114 0.886 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.035 0.965 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.297 -8.107 -1.930 12.485 hybrid contribution 1.746 -0.549 -0.022 1.830 sum -7.551 -8.656 -1.952 11.651 Atomic orbital electron populations 1.22715 0.80513 1.01917 1.00380 1.90554 1.21479 1.21154 1.96813 1.68088 1.35144 1.05407 1.02715 1.22408 0.95184 1.00246 0.89950 1.21013 0.96372 0.99490 0.93201 1.21655 0.98798 0.96752 1.01514 1.21787 1.00088 1.01489 0.96531 1.18977 0.89993 0.95162 0.86305 0.97283 1.20608 0.91995 0.89878 1.49810 0.93278 1.25615 0.99458 0.97363 0.93849 1.69958 1.15320 1.20845 1.50054 0.86245 0.79220 0.81036 0.79586 1.18960 1.20368 1.18136 1.20048 0.94682 0.94268 0.96002 1.20874 0.94187 0.99386 0.98230 1.21400 1.00444 0.98953 0.93480 1.21331 0.96023 0.98356 0.99736 1.21276 0.95261 1.00493 0.96954 1.21111 0.99945 1.00449 0.95738 0.88598 0.94294 0.93571 0.90154 0.96485 0.91188 0.91308 0.93207 0.94162 0.92993 0.90451 0.93187 0.91945 0.87363 0.84017 0.83276 0.84211 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 11.25 113.37 1.28 2.57 16 2 O -0.30 -11.83 9.79 -50.16 -0.49 -12.33 16 3 N -0.34 -14.74 3.57 -499.35 -1.78 -16.52 16 4 C 0.05 2.07 4.50 86.31 0.39 2.46 16 5 C -0.08 -2.63 2.97 -10.79 -0.03 -2.66 16 6 C -0.13 -4.00 9.08 71.98 0.65 -3.34 16 7 C -0.14 -3.81 9.19 71.98 0.66 -3.15 16 8 C 0.20 9.77 1.91 43.42 0.08 9.85 16 9 H 0.01 0.48 4.33 -2.39 -0.01 0.47 16 10 C -0.48 -26.67 7.38 25.60 0.19 -26.48 16 11 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 12 C 0.04 2.15 5.47 84.65 0.46 2.61 16 13 N -0.92 -55.00 13.96 21.45 0.30 -54.70 16 14 Si 0.91 43.68 27.20 68.60 1.87 45.55 16 15 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.26 -11.93 6.13 99.48 0.61 -11.32 16 18 C -0.05 -2.17 4.31 -19.87 -0.09 -2.26 16 19 C -0.11 -4.29 7.28 22.27 0.16 -4.13 16 20 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 21 C -0.14 -3.99 10.05 22.27 0.22 -3.76 16 22 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 23 C -0.15 -6.28 9.67 22.27 0.22 -6.07 16 24 H 0.10 2.42 8.14 -2.38 -0.02 2.41 16 25 H 0.04 1.24 6.12 -2.39 -0.01 1.22 16 26 H 0.05 1.31 7.41 -2.39 -0.02 1.30 16 27 H 0.08 3.76 6.77 -2.38 -0.02 3.75 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 2.18 7.00 -2.39 -0.02 2.17 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.66 7.57 -2.39 -0.02 1.64 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.11 4.45 7.94 -2.91 -0.02 4.42 16 38 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 39 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.10 4.11 7.67 -2.91 -0.02 4.09 16 Total: -1.00 -63.18 330.34 5.42 -57.76 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.88 Total: 22.11 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 4.65 Total: -41.87 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.48 Total: -71.22 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.49 Total: -12.33 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.87 Total: 45.55 kcal Total: -63.18 5.42 -57.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310560072.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.682 kcal (2) G-P(sol) polarization free energy of solvation -63.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds