Wall clock time and date at job start Mon Mar 30 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.46296 * 114.00387 * 2 1 4 4 C 1.46903 * 110.99944 * 126.85203 * 3 2 1 5 5 C 1.53001 * 109.47155 * 289.59340 * 4 3 2 6 6 C 1.53005 * 109.47171 * 66.97731 * 5 4 3 7 7 C 1.52998 * 109.46964 * 186.97289 * 5 4 3 8 8 C 1.46900 * 111.00280 * 250.80483 * 3 2 1 9 9 H 1.08997 * 109.47307 * 301.05232 * 8 3 2 10 10 C 1.50695 * 109.47399 * 181.04452 * 8 3 2 11 11 H 1.07995 * 120.00271 * 126.45269 * 10 8 3 12 12 C 1.37884 * 119.99892 * 306.45876 * 10 8 3 13 13 N 1.31512 * 119.99881 * 14.40178 * 12 10 8 14 14 Si 1.86797 * 119.99720 * 194.39916 * 12 10 8 15 15 H 1.48498 * 109.47227 * 60.00039 * 14 12 10 16 16 H 1.48505 * 109.46825 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47348 * 299.99753 * 14 12 10 18 18 C 1.50701 * 109.46541 * 61.04783 * 8 3 2 19 19 C 1.38228 * 120.00558 * 39.88443 * 18 8 3 20 20 C 1.38235 * 120.00113 * 180.02562 * 19 18 8 21 21 C 1.38236 * 120.00138 * 359.94877 * 20 19 18 22 22 C 1.38233 * 119.99948 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99812 * 0.07551 * 22 21 20 24 24 H 1.09004 * 109.46756 * 310.57048 * 1 2 3 25 25 H 1.08995 * 109.46843 * 70.56502 * 1 2 3 26 26 H 1.08998 * 109.47428 * 190.56885 * 1 2 3 27 27 H 1.09004 * 109.47154 * 49.59520 * 4 3 2 28 28 H 1.08996 * 109.47245 * 169.59047 * 4 3 2 29 29 H 1.09003 * 109.47121 * 306.97880 * 5 4 3 30 30 H 1.09004 * 109.46874 * 50.85826 * 6 5 4 31 31 H 1.08993 * 109.47412 * 170.85552 * 6 5 4 32 32 H 1.09001 * 109.46784 * 290.86252 * 6 5 4 33 33 H 1.09004 * 109.46777 * 60.00915 * 7 5 4 34 34 H 1.09002 * 109.46580 * 179.97438 * 7 5 4 35 35 H 1.08990 * 109.47500 * 300.00328 * 7 5 4 36 36 H 0.97004 * 119.99445 * 180.02562 * 13 12 10 37 37 H 1.08000 * 120.00014 * 359.97155 * 19 18 8 38 38 H 1.08002 * 119.99802 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.99393 * 179.72900 * 21 20 19 40 40 H 1.07995 * 119.99784 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99886 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.9897 1.4827 1.0974 5 6 2.2428 1.5211 2.4322 6 6 1.5991 0.1582 2.6958 7 6 3.2265 1.8466 3.5579 8 6 2.6502 1.6340 -1.2952 9 1 3.4204 0.8919 -1.5055 10 6 3.2732 3.0053 -1.2488 11 1 4.3116 3.1360 -1.5152 12 6 2.5175 4.0933 -0.8660 13 7 1.3562 3.9124 -0.2761 14 14 3.1434 5.8240 -1.1854 15 1 3.3388 6.0184 -2.6446 16 1 2.1521 6.8093 -0.6836 17 1 4.4367 6.0204 -0.4823 18 6 1.6045 1.5938 -2.3795 19 6 0.3465 2.1171 -2.1464 20 6 -0.6129 2.0797 -3.1410 21 6 -0.3139 1.5200 -4.3690 22 6 0.9446 0.9980 -4.6027 23 6 1.9036 1.0345 -3.6078 24 1 -0.3633 0.6684 0.7807 25 1 -0.3633 0.3419 -0.9691 26 1 -0.3634 -1.0102 0.1885 27 1 3.6784 0.6378 1.0905 28 1 3.5496 2.4088 0.9677 29 1 1.4684 2.2872 2.3933 30 1 2.3463 -0.6261 2.5741 31 1 1.2072 0.1320 3.7124 32 1 0.7855 -0.0022 1.9883 33 1 3.6850 2.8176 3.3701 34 1 2.6942 1.8744 4.5087 35 1 4.0008 1.0806 3.5967 36 1 0.8244 4.6778 -0.0072 37 1 0.1129 2.5545 -1.1869 38 1 -1.5959 2.4883 -2.9586 39 1 -1.0649 1.4869 -5.1445 40 1 1.1780 0.5603 -5.5620 41 1 2.8867 0.6264 -3.7903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310560075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:19 Heat of formation + Delta-G solvation = 32.670502 kcal Electronic energy + Delta-G solvation = -21464.542404 eV Core-core repulsion = 18539.711475 eV Total energy + Delta-G solvation = -2924.830929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.42243 -36.74267 -34.33174 -33.93138 -31.33115 -29.84849 -29.72450 -26.57037 -26.49606 -25.21096 -23.96698 -21.97302 -21.29560 -19.78153 -19.16329 -16.51406 -16.02256 -15.54665 -14.82280 -14.65896 -14.20584 -13.76706 -13.69367 -13.58489 -12.97565 -12.64765 -12.54970 -12.29556 -12.17497 -11.83687 -11.67397 -11.56922 -11.24394 -10.99532 -10.82209 -10.80698 -10.50948 -10.13433 -10.04758 -9.92374 -9.73825 -9.63253 -9.32686 -8.88136 -8.41829 -7.84472 -7.43764 -7.10966 -6.10060 -4.24816 2.43191 2.52976 3.23735 3.29652 3.34207 3.97422 4.30860 4.93358 5.14956 5.57250 5.70138 5.76548 5.77026 5.87172 5.95215 6.17957 6.21174 6.28591 6.35389 6.38387 6.43201 6.44592 6.50235 6.59547 6.63897 6.67366 6.74325 6.83791 6.95609 7.06414 7.15429 7.21332 7.23292 7.26794 7.46999 7.59308 7.69210 7.92510 7.98911 8.21923 8.29888 8.52236 8.83575 9.39445 10.84015 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.010531 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.118037 B = 2658.265308 C = 3902.745750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.306 6.306 3 N -0.298 5.298 4 C 0.070 3.930 5 C -0.086 4.086 6 C -0.146 4.146 7 C -0.142 4.142 8 C 0.229 3.771 9 H 0.007 0.993 10 C -0.533 4.533 11 H 0.066 0.934 12 C 0.088 3.912 13 N -0.822 5.822 14 Si 0.883 3.117 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.276 1.276 18 C -0.023 4.023 19 C -0.081 4.081 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.134 4.134 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.014 0.986 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.261 0.739 37 H 0.168 0.832 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 -3.596 1.590 4.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.305 6.305 3 N -0.071 5.071 4 C -0.058 4.058 5 C -0.105 4.105 6 C -0.203 4.203 7 C -0.199 4.199 8 C 0.122 3.878 9 H 0.025 0.975 10 C -0.571 4.571 11 H 0.084 0.916 12 C -0.121 4.121 13 N -0.454 5.454 14 Si 0.710 3.290 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.024 4.024 19 C -0.100 4.100 20 C -0.167 4.167 21 C -0.169 4.169 22 C -0.159 4.159 23 C -0.153 4.153 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.185 0.815 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.437 -3.418 1.767 4.555 hybrid contribution 0.825 0.617 -0.555 1.171 sum -1.611 -2.801 1.212 3.452 Atomic orbital electron populations 1.22429 0.83083 0.98881 1.00374 1.90492 1.18908 1.24544 1.96547 1.68547 1.33778 1.00757 1.04067 1.22131 0.92955 1.00815 0.89915 1.21001 0.97935 0.97655 0.93920 1.22063 1.01565 0.96975 0.99738 1.21791 0.99198 1.00947 0.98013 1.18649 0.89046 0.95333 0.84739 0.97478 1.20774 0.97327 0.89934 1.49034 0.91632 1.24909 0.95006 0.98711 0.93447 1.69994 1.11639 1.30050 1.33750 0.86802 0.78786 0.84338 0.79045 1.20124 1.21080 1.20187 1.20190 0.94729 0.92808 0.94651 1.22046 0.91849 0.94954 1.01102 1.21183 0.99321 1.01796 0.94403 1.20808 0.96536 1.02389 0.97202 1.20766 0.94254 1.02528 0.98305 1.20923 0.98455 1.01646 0.94293 0.93903 0.94177 0.92540 0.96759 0.87919 0.90235 0.94109 0.95034 0.90716 0.92943 0.93627 0.93645 0.92853 0.81521 0.87977 0.88206 0.88001 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.95 9.19 101.05 0.93 1.88 16 2 O -0.31 -6.69 8.75 -13.92 -0.12 -6.81 16 3 N -0.30 -6.76 2.46 -109.19 -0.27 -7.03 16 4 C 0.07 1.50 4.63 -3.82 -0.02 1.48 16 5 C -0.09 -1.60 3.11 -90.62 -0.28 -1.88 16 6 C -0.15 -2.53 8.31 37.16 0.31 -2.23 16 7 C -0.14 -2.24 9.18 37.16 0.34 -1.90 16 8 C 0.23 5.53 2.28 -70.02 -0.16 5.37 16 9 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 10 C -0.53 -13.40 7.00 -34.44 -0.24 -13.64 16 11 H 0.07 1.66 7.86 -52.49 -0.41 1.25 16 12 C 0.09 2.17 4.76 -17.82 -0.08 2.08 16 13 N -0.82 -20.10 9.05 55.43 0.50 -19.60 16 14 Si 0.88 19.69 29.56 -169.99 -5.03 14.67 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 C -0.02 -0.53 4.28 -104.62 -0.45 -0.98 16 19 C -0.08 -1.84 5.40 -39.59 -0.21 -2.05 16 20 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 21 C -0.15 -2.85 10.05 -39.58 -0.40 -3.24 16 22 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 23 C -0.13 -2.89 9.67 -39.58 -0.38 -3.27 16 24 H 0.04 0.81 7.14 -51.93 -0.37 0.44 16 25 H 0.04 0.81 5.47 -51.93 -0.28 0.52 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.01 0.30 8.09 -51.93 -0.42 -0.12 16 28 H 0.10 2.36 6.28 -51.93 -0.33 2.04 16 29 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 1.36 3.73 -51.93 -0.19 1.16 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 6.23 8.31 -40.82 -0.34 5.89 16 37 H 0.17 4.03 5.17 -52.49 -0.27 3.76 16 38 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.10 2.08 8.04 -52.49 -0.42 1.66 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -25.29 318.28 -8.04 -33.32 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.47 Total: 5.51 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -1.44 Total: -24.86 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.23 Total: -26.63 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.12 Total: -6.81 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -25.29 -8.04 -33.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310560075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.993 kcal (2) G-P(sol) polarization free energy of solvation -25.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds