Wall clock time and date at job start Mon Mar 30 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.46296 * 114.00387 * 2 1 4 4 C 1.46903 * 110.99944 * 126.85203 * 3 2 1 5 5 C 1.53001 * 109.47155 * 289.59340 * 4 3 2 6 6 C 1.53005 * 109.47171 * 66.97731 * 5 4 3 7 7 C 1.52998 * 109.46964 * 186.97289 * 5 4 3 8 8 C 1.46900 * 111.00280 * 250.80483 * 3 2 1 9 9 H 1.08997 * 109.47307 * 301.05232 * 8 3 2 10 10 C 1.50695 * 109.47399 * 181.04452 * 8 3 2 11 11 H 1.07995 * 120.00271 * 126.45269 * 10 8 3 12 12 C 1.37884 * 119.99892 * 306.45876 * 10 8 3 13 13 N 1.31512 * 119.99881 * 14.40178 * 12 10 8 14 14 Si 1.86797 * 119.99720 * 194.39916 * 12 10 8 15 15 H 1.48498 * 109.47227 * 60.00039 * 14 12 10 16 16 H 1.48505 * 109.46825 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47348 * 299.99753 * 14 12 10 18 18 C 1.50701 * 109.46541 * 61.04783 * 8 3 2 19 19 C 1.38228 * 120.00558 * 39.88443 * 18 8 3 20 20 C 1.38235 * 120.00113 * 180.02562 * 19 18 8 21 21 C 1.38236 * 120.00138 * 359.94877 * 20 19 18 22 22 C 1.38233 * 119.99948 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99812 * 0.07551 * 22 21 20 24 24 H 1.09004 * 109.46756 * 310.57048 * 1 2 3 25 25 H 1.08995 * 109.46843 * 70.56502 * 1 2 3 26 26 H 1.08998 * 109.47428 * 190.56885 * 1 2 3 27 27 H 1.09004 * 109.47154 * 49.59520 * 4 3 2 28 28 H 1.08996 * 109.47245 * 169.59047 * 4 3 2 29 29 H 1.09003 * 109.47121 * 306.97880 * 5 4 3 30 30 H 1.09004 * 109.46874 * 50.85826 * 6 5 4 31 31 H 1.08993 * 109.47412 * 170.85552 * 6 5 4 32 32 H 1.09001 * 109.46784 * 290.86252 * 6 5 4 33 33 H 1.09004 * 109.46777 * 60.00915 * 7 5 4 34 34 H 1.09002 * 109.46580 * 179.97438 * 7 5 4 35 35 H 1.08990 * 109.47500 * 300.00328 * 7 5 4 36 36 H 0.97004 * 119.99445 * 180.02562 * 13 12 10 37 37 H 1.08000 * 120.00014 * 359.97155 * 19 18 8 38 38 H 1.08002 * 119.99802 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.99393 * 179.72900 * 21 20 19 40 40 H 1.07995 * 119.99784 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99886 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.9897 1.4827 1.0974 5 6 2.2428 1.5211 2.4322 6 6 1.5991 0.1582 2.6958 7 6 3.2265 1.8466 3.5579 8 6 2.6502 1.6340 -1.2952 9 1 3.4204 0.8919 -1.5055 10 6 3.2732 3.0053 -1.2488 11 1 4.3116 3.1360 -1.5152 12 6 2.5175 4.0933 -0.8660 13 7 1.3562 3.9124 -0.2761 14 14 3.1434 5.8240 -1.1854 15 1 3.3388 6.0184 -2.6446 16 1 2.1521 6.8093 -0.6836 17 1 4.4367 6.0204 -0.4823 18 6 1.6045 1.5938 -2.3795 19 6 0.3465 2.1171 -2.1464 20 6 -0.6129 2.0797 -3.1410 21 6 -0.3139 1.5200 -4.3690 22 6 0.9446 0.9980 -4.6027 23 6 1.9036 1.0345 -3.6078 24 1 -0.3633 0.6684 0.7807 25 1 -0.3633 0.3419 -0.9691 26 1 -0.3634 -1.0102 0.1885 27 1 3.6784 0.6378 1.0905 28 1 3.5496 2.4088 0.9677 29 1 1.4684 2.2872 2.3933 30 1 2.3463 -0.6261 2.5741 31 1 1.2072 0.1320 3.7124 32 1 0.7855 -0.0022 1.9883 33 1 3.6850 2.8176 3.3701 34 1 2.6942 1.8744 4.5087 35 1 4.0008 1.0806 3.5967 36 1 0.8244 4.6778 -0.0072 37 1 0.1129 2.5545 -1.1869 38 1 -1.5959 2.4883 -2.9586 39 1 -1.0649 1.4869 -5.1445 40 1 1.1780 0.5603 -5.5620 41 1 2.8867 0.6264 -3.7903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310560075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:19 Heat of formation + Delta-G solvation = 21.988745 kcal Electronic energy + Delta-G solvation = -21465.005600 eV Core-core repulsion = 18539.711475 eV Total energy + Delta-G solvation = -2925.294125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.07372 -38.37205 -35.90565 -35.69088 -33.14690 -31.45799 -31.33155 -28.31058 -27.90379 -26.79907 -25.71456 -23.63974 -22.89437 -21.50118 -20.71365 -18.34219 -17.73652 -17.20570 -16.48284 -16.39614 -15.88929 -15.34228 -15.26938 -15.18531 -14.48206 -14.39609 -14.14836 -13.88169 -13.80515 -13.43244 -13.17021 -13.07356 -12.80421 -12.72978 -12.56427 -12.42206 -12.16725 -11.86664 -11.53254 -11.51302 -11.34125 -11.28364 -11.04391 -10.60726 -10.25459 -9.45619 -9.09303 -8.89325 -7.97881 -6.18201 0.81029 0.93526 1.43421 1.47806 1.52123 2.27556 2.45718 3.20778 3.33120 4.03362 4.22185 4.29966 4.34295 4.36764 4.48287 4.66319 4.72125 4.76338 4.83738 4.89156 4.89444 4.92089 4.98301 5.07039 5.08752 5.13645 5.19747 5.29636 5.37441 5.45418 5.51804 5.61618 5.63849 5.72003 5.74669 5.87085 5.96073 6.14281 6.29495 6.47987 6.53875 6.74995 6.98362 7.46627 8.94144 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.010531 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.118037 B = 2658.265308 C = 3902.745750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.314 6.314 3 N -0.299 5.299 4 C 0.072 3.928 5 C -0.081 4.081 6 C -0.140 4.140 7 C -0.135 4.135 8 C 0.228 3.772 9 H -0.019 1.019 10 C -0.554 4.554 11 H 0.051 0.949 12 C 0.064 3.936 13 N -0.826 5.826 14 Si 0.931 3.069 15 H -0.284 1.284 16 H -0.279 1.279 17 H -0.275 1.275 18 C -0.047 4.047 19 C -0.096 4.096 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.154 4.154 24 H 0.041 0.959 25 H 0.029 0.971 26 H 0.087 0.913 27 H 0.007 0.993 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.261 0.739 37 H 0.148 0.852 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 -3.858 1.277 5.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.315 6.315 3 N -0.071 5.071 4 C -0.056 4.056 5 C -0.100 4.100 6 C -0.197 4.197 7 C -0.193 4.193 8 C 0.121 3.879 9 H -0.001 1.001 10 C -0.592 4.592 11 H 0.069 0.931 12 C -0.144 4.144 13 N -0.458 5.458 14 Si 0.757 3.243 15 H -0.210 1.210 16 H -0.205 1.205 17 H -0.200 1.200 18 C -0.048 4.048 19 C -0.114 4.114 20 C -0.171 4.171 21 C -0.162 4.162 22 C -0.154 4.154 23 C -0.173 4.173 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.106 0.894 27 H 0.025 0.975 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.166 0.834 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.777 -3.678 1.465 5.471 hybrid contribution 1.198 0.625 -0.502 1.442 sum -2.579 -3.052 0.962 4.110 Atomic orbital electron populations 1.22522 0.81566 1.00644 0.99726 1.90462 1.20550 1.23876 1.96578 1.68532 1.33638 1.01361 1.03565 1.22130 0.93011 0.99234 0.91248 1.20927 0.97759 0.97971 0.93297 1.21971 1.01008 0.95757 1.00926 1.21733 0.98891 1.00905 0.97775 1.18597 0.89068 0.94130 0.86061 1.00125 1.20798 0.97009 0.91139 1.50265 0.93074 1.25277 0.95252 1.00650 0.93256 1.70084 1.11820 1.30421 1.33480 0.86067 0.78495 0.81559 0.78155 1.21028 1.20460 1.20012 1.20187 0.94970 0.94593 0.95060 1.21856 0.92323 0.95978 1.01228 1.21457 0.99691 1.01530 0.94435 1.21227 0.97108 1.00497 0.97374 1.21144 0.93787 1.01539 0.98912 1.21127 0.99441 1.02207 0.94523 0.94078 0.95230 0.89445 0.97521 0.90182 0.92350 0.94359 0.92562 0.91728 0.93473 0.91364 0.92751 0.92894 0.83448 0.85804 0.84386 0.84647 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 9.19 113.37 1.04 3.02 16 2 O -0.31 -13.89 8.75 -50.15 -0.44 -14.33 16 3 N -0.30 -13.95 2.46 -499.36 -1.23 -15.18 16 4 C 0.07 3.18 4.63 86.30 0.40 3.58 16 5 C -0.08 -2.99 3.11 -10.79 -0.03 -3.02 16 6 C -0.14 -4.67 8.31 71.98 0.60 -4.07 16 7 C -0.14 -4.12 9.18 71.98 0.66 -3.46 16 8 C 0.23 11.51 2.28 43.42 0.10 11.61 16 9 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16 10 C -0.55 -29.02 7.00 25.60 0.18 -28.84 16 11 H 0.05 2.73 7.86 -2.91 -0.02 2.71 16 12 C 0.06 3.21 4.76 84.66 0.40 3.62 16 13 N -0.83 -41.10 9.05 21.45 0.19 -40.91 16 14 Si 0.93 40.90 29.56 68.60 2.03 42.93 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 C -0.05 -2.23 4.28 -19.87 -0.08 -2.31 16 19 C -0.10 -4.31 5.40 22.27 0.12 -4.19 16 20 C -0.15 -5.88 10.05 22.27 0.22 -5.66 16 21 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 22 C -0.14 -4.88 10.05 22.27 0.22 -4.66 16 23 C -0.15 -6.60 9.67 22.27 0.22 -6.38 16 24 H 0.04 1.55 7.14 -2.38 -0.02 1.53 16 25 H 0.03 1.17 5.47 -2.39 -0.01 1.16 16 26 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.01 0.29 8.09 -2.39 -0.02 0.27 16 28 H 0.08 3.86 6.28 -2.39 -0.01 3.85 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.04 1.28 8.08 -2.38 -0.02 1.26 16 31 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 32 H 0.06 2.29 3.73 -2.39 -0.01 2.28 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.26 12.56 8.31 -92.71 -0.77 11.79 16 37 H 0.15 7.23 5.17 -2.91 -0.02 7.21 16 38 H 0.12 4.13 8.06 -2.91 -0.02 4.10 16 39 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 41 H 0.10 4.29 8.04 -2.91 -0.02 4.26 16 Total: -1.00 -55.02 318.28 5.82 -49.21 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.99 Total: 23.78 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 4.27 Total: -45.50 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -1.03 Total: -56.09 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.44 Total: -14.33 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -55.02 5.82 -49.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310560075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.194 kcal (2) G-P(sol) polarization free energy of solvation -55.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds