Wall clock time and date at job start Mon Mar 30 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46975 * 2 1 4 4 C 1.52998 * 109.47203 * 119.99585 * 2 1 3 5 5 O 1.42893 * 109.47043 * 65.00174 * 4 2 1 6 6 C 1.42907 * 114.00022 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46808 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47036 * 65.00340 * 7 6 5 9 9 C 1.39685 * 119.99856 * 179.97438 * 8 7 6 10 10 C 1.39337 * 119.95014 * 359.97438 * 9 8 7 11 11 C 1.38475 * 120.42035 * 180.02562 * 10 9 8 12 12 C 1.37684 * 120.32918 * 359.97438 * 11 10 9 13 13 C 1.40751 * 119.89421 * 0.03199 * 12 11 10 14 14 C 1.41406 * 120.20989 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99858 * 24.36605 * 14 13 12 16 16 C 1.39935 * 119.99740 * 204.36617 * 14 13 12 17 17 N 1.30827 * 120.00201 * 17.83614 * 16 14 13 18 18 Si 1.86796 * 119.99610 * 197.83636 * 16 14 13 19 19 H 1.48497 * 109.47206 * 89.99987 * 18 16 14 20 20 H 1.48507 * 109.47251 * 209.99859 * 18 16 14 21 21 H 1.48501 * 109.47426 * 329.99960 * 18 16 14 22 22 C 1.38280 * 119.95177 * 179.97438 * 9 8 7 23 23 H 1.09001 * 109.47506 * 60.00532 * 1 2 3 24 24 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47699 * 300.00251 * 1 2 3 26 26 H 1.08999 * 109.47285 * 240.00089 * 2 1 3 27 27 H 1.08997 * 109.47316 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47063 * 299.99926 * 3 2 1 29 29 H 1.09000 * 109.47113 * 59.99390 * 3 2 1 30 30 H 1.09002 * 109.47128 * 304.99986 * 4 2 1 31 31 H 1.08998 * 109.47166 * 185.00661 * 4 2 1 32 32 H 1.08993 * 109.46698 * 60.00689 * 6 5 4 33 33 H 1.09000 * 109.47013 * 300.00124 * 6 5 4 34 34 H 1.08998 * 109.47120 * 304.99975 * 7 6 5 35 35 H 1.09005 * 109.46753 * 185.00110 * 7 6 5 36 36 H 0.96998 * 120.00141 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.78902 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.83675 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.05769 * 179.97438 * 12 11 10 40 40 H 0.97003 * 119.99955 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.15877 * 359.70841 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.6620 -2.0980 1.1921 6 6 2.0924 -2.8661 2.3177 7 6 1.6354 -4.3167 2.1500 8 7 2.3111 -4.9110 0.9939 9 6 2.0531 -6.2374 0.6400 10 6 1.1533 -6.9945 1.3875 11 6 0.8907 -8.3104 1.0456 12 6 1.5161 -8.8853 -0.0379 13 6 2.4276 -8.1331 -0.8024 14 6 3.0741 -8.7171 -1.9162 15 1 2.6212 -9.5549 -2.4253 16 6 4.3007 -8.2093 -2.3587 17 7 5.0174 -7.4504 -1.5700 18 14 4.9147 -8.6150 -4.0756 19 1 4.4272 -7.5882 -5.0311 20 1 6.3997 -8.6297 -4.0796 21 1 4.4055 -9.9498 -4.4809 22 6 2.6911 -6.7973 -0.4517 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6053 -0.2616 2.1370 31 1 3.1262 -0.6441 1.2952 32 1 1.6591 -2.4512 3.2277 33 1 3.1798 -2.8336 2.3853 34 1 0.5570 -4.3420 1.9932 35 1 1.8855 -4.8824 3.0475 36 1 2.9382 -4.3837 0.4748 37 1 0.6576 -6.5521 2.2389 38 1 0.1918 -8.8887 1.6319 39 1 1.3084 -9.9122 -0.3003 40 1 5.8678 -7.0988 -1.8766 41 1 3.3852 -6.2100 -1.0346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313439663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:05 Heat of formation + Delta-G solvation = -46.693226 kcal Electronic energy + Delta-G solvation = -19265.787082 eV Core-core repulsion = 16337.514683 eV Total energy + Delta-G solvation = -2928.272398 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.53759 -37.60595 -35.57599 -34.39164 -33.14477 -29.94665 -29.35803 -27.30253 -26.75540 -25.64850 -25.12542 -22.37818 -20.78822 -20.29836 -19.77945 -17.21233 -16.81984 -16.06123 -15.90112 -14.99228 -14.85561 -14.57380 -14.39398 -13.93812 -13.33657 -13.10044 -12.93007 -12.63059 -12.53242 -12.35864 -12.08912 -11.96584 -11.49094 -11.34860 -11.08497 -11.00319 -10.99767 -10.90886 -10.67040 -10.50843 -10.33705 -9.65064 -9.51837 -9.36734 -9.17679 -8.68106 -7.23923 -6.66402 -6.06581 -4.24479 2.92585 3.13958 3.17770 3.30415 3.41071 3.62644 4.02979 4.39858 4.69880 4.75052 4.79485 4.96779 5.19201 5.26542 5.32145 5.35744 5.44097 5.45432 5.57523 5.69512 5.79033 5.86467 5.91754 6.00034 6.13190 6.17585 6.24043 6.34079 6.65265 6.95131 7.18079 7.20215 7.23102 7.45855 7.52743 7.89492 8.03837 8.18585 8.25031 8.56592 8.81709 8.91966 9.08587 9.20115 10.32319 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.004372 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.313002 B = 6402.418620 C = 7512.069909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.145 4.145 4 C 0.066 3.934 5 O -0.378 6.378 6 C 0.053 3.947 7 C 0.140 3.860 8 N -0.755 5.755 9 C 0.217 3.783 10 C -0.300 4.300 11 C -0.066 4.066 12 C -0.259 4.259 13 C 0.139 3.861 14 C -0.466 4.466 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.904 3.096 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.263 1.263 22 C -0.231 4.231 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.392 0.608 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.276 0.724 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 14.568 4.788 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.011 4.011 5 O -0.297 6.297 6 C -0.024 4.024 7 C 0.015 3.985 8 N -0.389 5.389 9 C 0.118 3.882 10 C -0.323 4.323 11 C -0.085 4.085 12 C -0.279 4.279 13 C 0.136 3.864 14 C -0.496 4.496 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.419 5.419 18 Si 0.729 3.271 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.187 1.187 22 C -0.255 4.255 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.225 0.775 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.175 14.627 4.824 15.726 hybrid contribution 0.799 0.174 -0.596 1.012 sum -2.376 14.800 4.228 15.575 Atomic orbital electron populations 1.21776 0.94589 1.02659 1.01078 1.21095 0.96807 0.95429 0.98194 1.21785 1.01039 0.95398 1.02030 1.22547 0.98257 0.82520 0.97791 1.87983 1.78473 1.19753 1.43489 1.22777 0.98751 0.92012 0.88856 1.21057 0.97442 0.89523 0.90507 1.44318 1.50565 1.11208 1.32855 1.17662 0.93818 0.82789 0.93952 1.19872 1.10148 0.96331 1.05955 1.20274 0.97766 0.94085 0.96405 1.20853 1.07855 0.98759 1.00465 1.17319 0.88652 0.90253 0.90213 1.19558 1.03494 1.14687 1.11829 0.90613 1.25864 0.96326 0.93498 0.98209 1.69874 1.10671 1.26399 1.34948 0.86393 0.77845 0.79996 0.82895 1.19417 1.20499 1.18702 1.20715 1.07886 0.96299 1.00555 0.92921 0.91597 0.93145 0.90178 0.92568 0.92082 0.92686 0.93713 0.93596 0.92637 0.92972 0.92583 0.91986 0.77457 0.89735 0.89689 0.89440 0.91276 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.09 37.15 0.34 -1.13 16 2 C -0.10 -1.00 3.16 -90.62 -0.29 -1.28 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 4 C 0.07 0.72 5.32 37.16 0.20 0.92 16 5 O -0.38 -5.35 9.82 -35.23 -0.35 -5.69 16 6 C 0.05 0.68 6.07 37.16 0.23 0.91 16 7 C 0.14 2.25 5.29 -4.04 -0.02 2.23 16 8 N -0.76 -15.19 5.68 -58.68 -0.33 -15.52 16 9 C 0.22 5.26 6.64 -83.86 -0.56 4.70 16 10 C -0.30 -7.06 9.32 -39.09 -0.36 -7.42 16 11 C -0.07 -1.58 10.01 -39.70 -0.40 -1.98 16 12 C -0.26 -6.73 9.79 -38.83 -0.38 -7.11 16 13 C 0.14 3.88 5.57 -106.85 -0.60 3.29 16 14 C -0.47 -12.89 9.05 -37.74 -0.34 -13.23 16 15 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 16 C 0.08 2.04 5.14 -17.34 -0.09 1.95 16 17 N -0.79 -21.16 10.95 55.55 0.61 -20.55 16 18 Si 0.90 19.32 29.59 -169.99 -5.03 14.28 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.23 -6.24 8.53 -38.68 -0.33 -6.57 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.80 7.82 -51.93 -0.41 0.39 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 35 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 36 H 0.39 7.74 8.48 -40.82 -0.35 7.39 16 37 H 0.08 1.78 6.70 -52.49 -0.35 1.43 16 38 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 41 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -29.34 338.34 -9.14 -38.48 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.88 Total: 9.47 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -2.26 Total: -25.56 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.28 Total: -36.07 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.35 Total: -5.69 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.34 -9.14 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313439663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.218 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds