Wall clock time and date at job start Mon Mar 30 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46975 * 2 1 4 4 C 1.52998 * 109.47203 * 119.99585 * 2 1 3 5 5 O 1.42893 * 109.47043 * 65.00174 * 4 2 1 6 6 C 1.42907 * 114.00022 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46808 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47036 * 65.00340 * 7 6 5 9 9 C 1.39685 * 119.99856 * 179.97438 * 8 7 6 10 10 C 1.39337 * 119.95014 * 359.97438 * 9 8 7 11 11 C 1.38475 * 120.42035 * 180.02562 * 10 9 8 12 12 C 1.37684 * 120.32918 * 359.97438 * 11 10 9 13 13 C 1.40751 * 119.89421 * 0.03199 * 12 11 10 14 14 C 1.41406 * 120.20989 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99858 * 24.36605 * 14 13 12 16 16 C 1.39935 * 119.99740 * 204.36617 * 14 13 12 17 17 N 1.30827 * 120.00201 * 17.83614 * 16 14 13 18 18 Si 1.86796 * 119.99610 * 197.83636 * 16 14 13 19 19 H 1.48497 * 109.47206 * 89.99987 * 18 16 14 20 20 H 1.48507 * 109.47251 * 209.99859 * 18 16 14 21 21 H 1.48501 * 109.47426 * 329.99960 * 18 16 14 22 22 C 1.38280 * 119.95177 * 179.97438 * 9 8 7 23 23 H 1.09001 * 109.47506 * 60.00532 * 1 2 3 24 24 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47699 * 300.00251 * 1 2 3 26 26 H 1.08999 * 109.47285 * 240.00089 * 2 1 3 27 27 H 1.08997 * 109.47316 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47063 * 299.99926 * 3 2 1 29 29 H 1.09000 * 109.47113 * 59.99390 * 3 2 1 30 30 H 1.09002 * 109.47128 * 304.99986 * 4 2 1 31 31 H 1.08998 * 109.47166 * 185.00661 * 4 2 1 32 32 H 1.08993 * 109.46698 * 60.00689 * 6 5 4 33 33 H 1.09000 * 109.47013 * 300.00124 * 6 5 4 34 34 H 1.08998 * 109.47120 * 304.99975 * 7 6 5 35 35 H 1.09005 * 109.46753 * 185.00110 * 7 6 5 36 36 H 0.96998 * 120.00141 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.78902 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.83675 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.05769 * 179.97438 * 12 11 10 40 40 H 0.97003 * 119.99955 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.15877 * 359.70841 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.6620 -2.0980 1.1921 6 6 2.0924 -2.8661 2.3177 7 6 1.6354 -4.3167 2.1500 8 7 2.3111 -4.9110 0.9939 9 6 2.0531 -6.2374 0.6400 10 6 1.1533 -6.9945 1.3875 11 6 0.8907 -8.3104 1.0456 12 6 1.5161 -8.8853 -0.0379 13 6 2.4276 -8.1331 -0.8024 14 6 3.0741 -8.7171 -1.9162 15 1 2.6212 -9.5549 -2.4253 16 6 4.3007 -8.2093 -2.3587 17 7 5.0174 -7.4504 -1.5700 18 14 4.9147 -8.6150 -4.0756 19 1 4.4272 -7.5882 -5.0311 20 1 6.3997 -8.6297 -4.0796 21 1 4.4055 -9.9498 -4.4809 22 6 2.6911 -6.7973 -0.4517 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6053 -0.2616 2.1370 31 1 3.1262 -0.6441 1.2952 32 1 1.6591 -2.4512 3.2277 33 1 3.1798 -2.8336 2.3853 34 1 0.5570 -4.3420 1.9932 35 1 1.8855 -4.8824 3.0475 36 1 2.9382 -4.3837 0.4748 37 1 0.6576 -6.5521 2.2389 38 1 0.1918 -8.8887 1.6319 39 1 1.3084 -9.9122 -0.3003 40 1 5.8678 -7.0988 -1.8766 41 1 3.3852 -6.2100 -1.0346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313439663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:05 Heat of formation + Delta-G solvation = -63.036841 kcal Electronic energy + Delta-G solvation = -19266.495794 eV Core-core repulsion = 16337.514683 eV Total energy + Delta-G solvation = -2928.981111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81368 -39.16949 -36.83877 -35.77250 -34.94625 -31.44247 -31.32324 -28.27605 -28.02403 -27.12890 -26.60557 -23.77406 -22.59149 -21.62852 -21.13219 -19.10619 -17.80435 -17.66911 -17.10743 -16.56684 -16.46386 -15.92469 -15.76783 -15.16151 -14.64746 -14.58236 -14.44427 -14.05558 -13.76908 -13.64561 -13.33930 -13.09993 -12.99069 -12.81768 -12.70258 -12.44493 -12.25672 -12.06344 -11.90749 -11.79268 -11.51085 -11.49664 -11.29827 -11.07178 -10.55916 -10.48244 -9.24472 -8.61298 -7.88379 -6.31385 1.09365 1.34782 1.38286 1.51470 1.59378 2.23462 2.66283 2.81586 2.89846 3.87651 3.87997 3.94216 4.09227 4.22583 4.24663 4.42815 4.49757 4.55170 4.61566 4.70247 4.75288 4.79038 4.83247 4.90522 4.98539 5.00897 5.03651 5.20779 5.21725 5.31844 5.37971 5.42344 5.46001 5.60977 5.97298 6.11772 6.22474 6.26014 6.30837 6.59179 6.95302 7.06542 7.07879 7.25954 8.39291 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.004372 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.313002 B = 6402.418620 C = 7512.069909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.140 4.140 4 C 0.062 3.938 5 O -0.406 6.406 6 C 0.059 3.941 7 C 0.135 3.865 8 N -0.751 5.751 9 C 0.219 3.781 10 C -0.303 4.303 11 C -0.062 4.062 12 C -0.287 4.287 13 C 0.108 3.892 14 C -0.505 4.505 15 H 0.072 0.928 16 C 0.037 3.963 17 N -0.823 5.823 18 Si 0.980 3.020 19 H -0.264 1.264 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.261 4.261 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.391 0.609 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.285 0.715 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 16.006 5.658 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.197 4.197 4 C -0.014 4.014 5 O -0.326 6.326 6 C -0.017 4.017 7 C 0.011 3.989 8 N -0.383 5.383 9 C 0.117 3.883 10 C -0.326 4.326 11 C -0.081 4.081 12 C -0.308 4.308 13 C 0.106 3.894 14 C -0.535 4.535 15 H 0.090 0.910 16 C -0.178 4.178 17 N -0.449 5.449 18 Si 0.801 3.199 19 H -0.189 1.189 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.285 4.285 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.224 0.776 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.359 16.097 5.729 17.413 hybrid contribution 0.793 -0.194 -0.753 1.111 sum -2.565 15.903 4.976 16.860 Atomic orbital electron populations 1.21745 0.94601 1.01316 1.02158 1.21135 0.96838 0.96696 0.97141 1.21743 1.01254 0.93725 1.02965 1.22722 0.98801 0.81140 0.98766 1.87951 1.78919 1.21415 1.44302 1.22739 0.99172 0.90066 0.89772 1.21303 0.96874 0.91649 0.89084 1.44472 1.50330 1.09779 1.33766 1.17815 0.93005 0.84513 0.92961 1.20228 1.09645 0.96241 1.06457 1.20660 0.97316 0.94540 0.95564 1.21030 1.08844 0.99168 1.01730 1.17716 0.89623 0.91084 0.91023 1.19819 1.04880 1.15752 1.13075 0.91008 1.26723 0.95870 0.92999 1.02181 1.69931 1.11173 1.26950 1.36804 0.85247 0.77716 0.79819 0.77130 1.18891 1.19109 1.18236 1.20643 1.09261 0.96356 1.02275 0.92148 0.94064 0.91789 0.92313 0.92212 0.91498 0.91409 0.91854 0.93036 0.89416 0.92484 0.92950 0.90789 0.77567 0.86772 0.86210 0.89134 0.90494 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.09 71.98 0.65 -2.07 16 2 C -0.10 -1.94 3.16 -10.79 -0.03 -1.97 16 3 C -0.14 -1.95 9.19 71.98 0.66 -1.29 16 4 C 0.06 1.25 5.32 71.98 0.38 1.63 16 5 O -0.41 -10.96 9.82 -148.98 -1.46 -12.42 16 6 C 0.06 1.39 6.07 71.98 0.44 1.83 16 7 C 0.14 4.08 5.29 86.38 0.46 4.54 16 8 N -0.75 -29.92 5.68 -339.55 -1.93 -31.85 16 9 C 0.22 10.64 6.64 38.16 0.25 10.90 16 10 C -0.30 -13.85 9.32 22.59 0.21 -13.64 16 11 C -0.06 -2.91 10.01 22.20 0.22 -2.68 16 12 C -0.29 -15.22 9.79 22.75 0.22 -15.00 16 13 C 0.11 6.30 5.57 -21.31 -0.12 6.18 16 14 C -0.51 -29.08 9.05 23.46 0.21 -28.87 16 15 H 0.07 4.00 7.91 -2.91 -0.02 3.98 16 16 C 0.04 1.96 5.14 85.25 0.44 2.40 16 17 N -0.82 -45.07 10.95 21.82 0.24 -44.83 16 18 Si 0.98 40.18 29.59 68.60 2.03 42.21 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 C -0.26 -14.61 8.53 22.86 0.19 -14.42 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.04 0.99 7.82 -2.39 -0.02 0.97 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.64 7.94 -2.39 -0.02 1.62 16 35 H 0.07 2.09 7.94 -2.38 -0.02 2.07 16 36 H 0.39 15.58 8.48 -92.71 -0.79 14.80 16 37 H 0.11 4.48 6.70 -2.91 -0.02 4.46 16 38 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 41 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 Total: -1.00 -65.05 338.34 3.28 -61.77 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.21 Total: 37.60 kcal Atomic # 6 Polarization: -56.67 SS G_CDS: 4.19 Total: -52.48 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.69 Total: -76.68 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.46 Total: -12.42 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -65.05 3.28 -61.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313439663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.271 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds