Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47226 * 2 1 4 4 H 1.09001 * 109.47264 * 54.99745 * 3 2 1 5 5 C 1.53007 * 109.47055 * 294.99890 * 3 2 1 6 6 C 1.52994 * 109.47092 * 175.00213 * 3 2 1 7 7 H 1.08996 * 109.47364 * 304.99571 * 6 3 2 8 8 C 1.53004 * 109.47472 * 64.99888 * 6 3 2 9 9 N 1.46507 * 109.46988 * 184.99954 * 6 3 2 10 10 C 1.39785 * 119.99799 * 154.99886 * 9 6 3 11 11 C 1.38749 * 120.10768 * 359.72037 * 10 9 6 12 12 C 1.38201 * 119.99245 * 179.74661 * 11 10 9 13 13 C 1.38341 * 120.20195 * 0.53148 * 12 11 10 14 14 C 1.38179 * 120.20807 * 359.74538 * 13 12 11 15 15 C 1.38712 * 120.00926 * 359.97438 * 14 13 12 16 16 O 1.35797 * 120.10291 * 180.02562 * 15 14 13 17 17 C 1.34799 * 116.99863 * 354.39725 * 16 15 14 18 18 H 1.07994 * 120.00435 * 5.06585 * 17 16 15 19 19 C 1.38632 * 119.99730 * 185.06364 * 17 16 15 20 20 N 1.31580 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00104 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47086 * 89.99903 * 21 19 17 23 23 H 1.48497 * 109.47304 * 210.00263 * 21 19 17 24 24 H 1.48497 * 109.46604 * 329.99849 * 21 19 17 25 25 H 1.09000 * 109.46989 * 300.00265 * 1 2 3 26 26 H 1.09000 * 109.47198 * 59.99986 * 1 2 3 27 27 H 1.08991 * 109.47338 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46989 * 239.99735 * 2 1 3 29 29 H 1.09000 * 109.47184 * 119.99457 * 2 1 3 30 30 H 1.08991 * 109.47068 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46966 * 300.00038 * 5 3 2 32 32 H 1.09003 * 109.47115 * 59.99560 * 5 3 2 33 33 H 1.09001 * 109.46701 * 299.99918 * 8 6 3 34 34 H 1.08997 * 109.46640 * 59.99805 * 8 6 3 35 35 H 1.08994 * 109.46748 * 179.97438 * 8 6 3 36 36 H 0.96998 * 119.99883 * 334.99912 * 9 6 3 37 37 H 1.07999 * 119.99855 * 0.02562 * 11 10 9 38 38 H 1.07995 * 119.89668 * 180.29919 * 12 11 10 39 39 H 1.07999 * 119.89431 * 179.76574 * 13 12 11 40 40 H 1.08003 * 119.99616 * 180.02562 * 14 13 12 41 41 H 0.97004 * 119.99734 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.8571 0.8801 1.0112 8 6 4.1798 0.7976 -1.1171 9 7 4.0433 2.8238 0.2457 10 6 5.2627 3.0883 0.8759 11 6 6.0189 2.0465 1.3935 12 6 7.2267 2.3102 2.0114 13 6 7.6803 3.6121 2.1257 14 6 6.9312 4.6564 1.6183 15 6 5.7204 4.4012 0.9913 16 8 4.9829 5.4261 0.4914 17 6 5.4248 6.6754 0.7384 18 1 6.3697 6.8248 1.2396 19 6 4.6663 7.7685 0.3490 20 7 3.5149 7.5865 -0.2612 21 14 5.2789 9.4999 0.6906 22 1 6.0952 9.9715 -0.4567 23 1 4.1187 10.4074 0.8788 24 1 6.1098 9.4970 1.9214 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.9990 3.1540 -1.3076 31 1 2.0699 1.5875 -2.1492 32 1 0.5489 2.1252 -1.3970 33 1 3.8238 -0.2288 -1.2064 34 1 3.8875 1.3619 -2.0026 35 1 5.2661 0.7993 -1.0277 36 1 3.5138 3.5536 -0.1120 37 1 5.6659 1.0293 1.3096 38 1 7.8164 1.4977 2.4095 39 1 8.6231 3.8128 2.6129 40 1 7.2888 5.6715 1.7091 41 1 2.9843 8.3514 -0.5341 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319851155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = -33.978012 kcal Electronic energy + Delta-G solvation = -20142.170609 eV Core-core repulsion = 17214.449583 eV Total energy + Delta-G solvation = -2927.721025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89805 -39.27633 -37.84988 -35.28983 -34.18855 -31.88266 -30.65945 -29.51714 -28.81604 -27.23443 -26.15963 -23.95403 -22.92279 -22.06059 -20.10240 -19.59842 -19.02588 -17.34703 -16.89667 -16.30277 -16.16376 -15.68896 -15.54989 -15.43959 -15.12515 -14.61666 -14.47166 -14.20066 -14.03662 -13.49239 -13.18633 -13.09282 -13.02438 -12.86671 -12.68419 -12.52817 -12.39797 -12.20659 -12.07508 -11.82645 -11.57144 -11.46330 -11.28338 -11.12994 -10.80574 -10.68844 -9.19622 -8.40575 -7.94800 -6.01592 0.75283 0.93918 1.35014 1.43738 1.51338 2.20134 2.71336 2.93729 3.29736 3.56775 3.79196 3.92253 4.04456 4.23565 4.37130 4.40385 4.44951 4.54215 4.60868 4.66502 4.73050 4.73506 4.77465 4.95454 5.01014 5.06687 5.10608 5.15098 5.17335 5.22497 5.22976 5.28727 5.34384 5.54631 5.54654 5.59625 5.75390 5.93419 6.05518 6.25566 6.74214 6.93607 7.06235 7.91300 8.82807 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.005918 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.748938 B = 4730.310809 C = 6097.879222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.093 4.093 4 H 0.055 0.945 5 C -0.148 4.148 6 C 0.155 3.845 7 H 0.079 0.921 8 C -0.164 4.164 9 N -0.747 5.747 10 C 0.154 3.846 11 C -0.169 4.169 12 C -0.140 4.140 13 C -0.140 4.140 14 C -0.210 4.210 15 C 0.041 3.959 16 O -0.232 6.232 17 C -0.402 4.402 18 H 0.093 0.907 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.012 2.988 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.257 1.257 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.391 0.609 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.112 0.888 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 -14.867 1.008 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.112 4.112 4 H 0.074 0.926 5 C -0.206 4.206 6 C 0.051 3.949 7 H 0.097 0.903 8 C -0.222 4.222 9 N -0.378 5.378 10 C 0.052 3.948 11 C -0.192 4.192 12 C -0.158 4.158 13 C -0.160 4.160 14 C -0.231 4.231 15 C -0.010 4.010 16 O -0.139 6.139 17 C -0.479 4.479 18 H 0.110 0.890 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.833 3.167 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.181 1.181 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.225 0.775 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.130 0.870 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.314 -14.955 0.804 15.035 hybrid contribution -0.002 1.719 -0.096 1.721 sum -1.316 -13.237 0.707 13.321 Atomic orbital electron populations 1.21816 0.95343 1.02188 1.01690 1.21531 0.96303 0.93820 1.03049 1.21359 0.93608 0.98177 0.98083 0.92618 1.21917 1.01694 0.99284 0.97662 1.21011 0.93548 0.81949 0.98422 0.90269 1.22336 1.00624 1.01408 0.97845 1.44753 1.20368 1.07954 1.64742 1.17482 0.89051 0.90146 0.98143 1.20597 0.96577 0.97113 1.04947 1.20934 0.96480 0.96536 1.01889 1.20874 1.00317 0.92383 1.02382 1.21075 0.96034 1.00258 1.05701 1.19514 0.93473 0.88471 0.99571 1.83829 1.48464 1.13440 1.68210 1.21673 1.06097 0.80346 1.39796 0.88977 1.26393 0.95539 1.03584 0.96503 1.70176 1.13447 1.32540 1.39844 0.84667 0.77933 0.74853 0.79283 1.19090 1.19739 1.18101 0.93473 0.92606 0.91362 0.90372 0.91113 0.95456 0.91235 0.91498 0.89261 0.93154 0.93468 0.77498 0.83989 0.83538 0.84854 0.87012 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.67 71.98 0.70 -1.89 16 2 C -0.11 -1.98 5.03 30.60 0.15 -1.82 16 3 C -0.09 -2.35 2.32 -10.79 -0.03 -2.37 16 4 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 5 C -0.15 -3.95 8.34 71.98 0.60 -3.35 16 6 C 0.16 4.39 2.05 44.99 0.09 4.48 16 7 H 0.08 2.09 6.48 -2.39 -0.02 2.08 16 8 C -0.16 -4.06 8.71 71.98 0.63 -3.43 16 9 N -0.75 -29.34 5.18 -318.47 -1.65 -30.99 16 10 C 0.15 6.63 6.66 38.31 0.25 6.89 16 11 C -0.17 -5.91 8.87 22.38 0.20 -5.71 16 12 C -0.14 -4.56 10.04 22.29 0.22 -4.33 16 13 C -0.14 -5.13 10.04 22.28 0.22 -4.91 16 14 C -0.21 -9.69 9.16 22.37 0.20 -9.49 16 15 C 0.04 2.10 6.67 22.69 0.15 2.25 16 16 O -0.23 -13.93 9.01 -22.95 -0.21 -14.13 16 17 C -0.40 -23.95 9.49 67.91 0.64 -23.30 16 18 H 0.09 5.15 5.21 -2.91 -0.02 5.13 16 19 C -0.02 -1.36 5.49 84.82 0.47 -0.89 16 20 N -0.92 -56.75 13.67 21.61 0.30 -56.45 16 21 Si 1.01 44.22 29.55 68.60 2.03 46.25 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.96 6.57 -2.39 -0.02 0.94 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.23 6.81 -2.39 -0.02 1.21 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 0.90 6.77 -2.39 -0.02 0.88 16 31 H 0.07 1.66 6.34 -2.39 -0.02 1.65 16 32 H 0.07 1.58 6.57 -2.39 -0.02 1.56 16 33 H 0.09 1.63 6.68 -2.39 -0.02 1.61 16 34 H 0.05 1.35 6.34 -2.39 -0.02 1.34 16 35 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 36 H 0.39 17.72 6.54 -92.71 -0.61 17.12 16 37 H 0.14 4.03 6.15 -2.91 -0.02 4.02 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 40 H 0.11 5.28 5.64 -2.91 -0.02 5.26 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -69.01 322.08 5.40 -63.60 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: 0.43 Total: 39.60 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 4.51 Total: -47.88 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -1.35 Total: -87.44 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.21 Total: -14.13 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -69.01 5.40 -63.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319851155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.625 kcal (2) G-P(sol) polarization free energy of solvation -69.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds