Wall clock time and date at job start Mon Mar 30 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47026 * 2 1 4 4 H 1.09007 * 109.47044 * 54.89959 * 3 2 1 5 5 C 1.53009 * 109.46977 * 174.89180 * 3 2 1 6 6 O 1.42904 * 109.46721 * 54.81580 * 5 3 2 7 7 N 1.46894 * 109.47691 * 294.89518 * 3 2 1 8 8 C 1.46899 * 110.99770 * 322.81577 * 7 3 2 9 9 C 1.46899 * 111.00107 * 86.76572 * 7 3 2 10 10 H 1.08998 * 109.47573 * 303.44220 * 9 7 3 11 11 C 1.50696 * 109.47097 * 63.44247 * 9 7 3 12 12 H 1.08005 * 119.99977 * 35.05452 * 11 9 7 13 13 C 1.37881 * 120.00341 * 215.05081 * 11 9 7 14 14 N 1.31515 * 119.99483 * 354.80163 * 13 11 9 15 15 Si 1.86797 * 119.99973 * 174.80084 * 13 11 9 16 16 H 1.48494 * 109.47500 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47122 * 120.00562 * 15 13 11 18 18 H 1.48501 * 109.47066 * 239.99850 * 15 13 11 19 19 C 1.50697 * 109.47177 * 183.44143 * 9 7 3 20 20 C 1.38236 * 120.00085 * 312.86380 * 19 9 7 21 21 C 1.38241 * 119.99948 * 180.02562 * 20 19 9 22 22 C 1.38229 * 119.99850 * 0.07099 * 21 20 19 23 23 C 1.38231 * 120.00417 * 359.97438 * 22 21 20 24 24 C 1.38231 * 119.99808 * 359.97438 * 23 22 21 25 25 H 1.09011 * 109.46762 * 312.86743 * 1 2 3 26 26 H 1.09001 * 109.47450 * 72.86509 * 1 2 3 27 27 H 1.09000 * 109.47336 * 192.87233 * 1 2 3 28 28 H 1.08999 * 109.46824 * 240.00239 * 2 1 3 29 29 H 1.08997 * 109.47305 * 120.00336 * 2 1 3 30 30 H 1.08996 * 109.46710 * 174.81298 * 5 3 2 31 31 H 1.08999 * 109.46806 * 294.81746 * 5 3 2 32 32 H 0.96694 * 113.99453 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47457 * 190.37460 * 8 7 3 34 34 H 1.09004 * 109.47139 * 310.37534 * 8 7 3 35 35 H 1.08998 * 109.47347 * 70.37240 * 8 7 3 36 36 H 0.97002 * 119.99447 * 179.97438 * 14 13 11 37 37 H 1.08002 * 120.00267 * 0.10923 * 20 19 9 38 38 H 1.07994 * 119.99786 * 180.34615 * 21 20 19 39 39 H 1.08004 * 119.99788 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00392 * 179.97438 * 23 22 21 41 41 H 1.08007 * 120.00237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6039 1.9820 0.8408 5 6 3.5647 1.4444 0.1284 6 8 4.1307 0.6363 -0.9054 7 7 1.6536 2.0986 -1.2562 8 6 1.7360 1.1630 -2.3857 9 6 0.3096 2.6825 -1.1534 10 1 -0.4032 1.9069 -0.8733 11 6 0.3112 3.7654 -0.1054 12 1 1.1840 4.3877 0.0267 13 6 -0.8015 3.9618 0.6848 14 7 -1.8994 3.2745 0.4569 15 14 -0.7496 5.2040 2.0789 16 1 0.5914 5.8400 2.1255 17 1 -1.7842 6.2451 1.8530 18 1 -1.0147 4.5140 3.3668 19 6 -0.0854 3.2712 -2.4833 20 6 0.8002 4.0787 -3.1721 21 6 0.4376 4.6191 -4.3918 22 6 -0.8110 4.3531 -4.9218 23 6 -1.6969 3.5463 -4.2326 24 6 -1.3340 3.0051 -3.0135 25 1 -0.3633 0.6992 0.7533 26 1 -0.3634 0.3028 -0.9820 27 1 -0.3634 -1.0018 0.2289 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9357 2.4651 0.0360 31 1 3.8478 1.0414 1.1008 32 1 5.0964 0.5920 -0.8855 33 1 1.6259 1.7119 -3.3210 34 1 2.7031 0.6602 -2.3712 35 1 0.9404 0.4226 -2.3031 36 1 -2.6821 3.4124 1.0130 37 1 1.7758 4.2864 -2.7581 38 1 1.1315 5.2454 -4.9325 39 1 -1.0944 4.7756 -5.8745 40 1 -2.6726 3.3388 -4.6465 41 1 -2.0263 2.3750 -2.4747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383114955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:55 Heat of formation + Delta-G solvation = -32.288412 kcal Electronic energy + Delta-G solvation = -21290.311147 eV Core-core repulsion = 18362.663388 eV Total energy + Delta-G solvation = -2927.647759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57808 -39.11749 -36.87817 -34.82836 -33.33670 -31.59853 -31.29781 -29.73556 -28.92573 -25.82851 -24.61225 -23.76603 -23.13129 -21.32178 -20.30456 -18.45277 -18.31249 -17.41073 -16.83824 -16.38879 -16.01102 -15.73076 -15.37229 -15.11873 -14.79522 -14.53634 -14.00982 -13.69868 -13.59322 -13.40549 -13.27829 -12.96263 -12.93954 -12.84105 -12.55124 -12.33410 -12.16679 -11.93505 -11.73623 -11.57515 -11.39084 -11.20445 -11.14530 -10.58992 -10.48191 -9.53071 -9.19739 -8.59169 -8.05830 -6.14904 0.78709 0.84835 1.38498 1.42589 1.52042 2.43168 3.09794 3.31846 3.57307 3.67757 4.06595 4.28677 4.32065 4.33760 4.36695 4.47716 4.66280 4.67582 4.76281 4.81794 4.84402 4.92345 4.94857 5.00919 5.03081 5.11186 5.22336 5.27112 5.39537 5.46334 5.54780 5.60630 5.66039 5.79497 5.83800 5.90037 6.20029 6.24827 6.45562 6.59268 6.92534 7.05353 7.14648 7.51472 8.96542 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.010767 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.868297 B = 2599.846902 C = 3883.116062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.085 3.915 4 H 0.075 0.925 5 C 0.100 3.900 6 O -0.576 6.576 7 N -0.526 5.526 8 C 0.030 3.970 9 C 0.216 3.784 10 H 0.046 0.954 11 C -0.496 4.496 12 H 0.047 0.953 13 C 0.025 3.975 14 N -0.906 5.906 15 Si 0.942 3.058 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.280 1.280 19 C -0.042 4.042 20 C -0.118 4.118 21 C -0.132 4.132 22 C -0.147 4.147 23 C -0.132 4.132 24 C -0.140 4.140 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.386 0.614 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.006 0.994 36 H 0.259 0.741 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.478 -3.568 -4.258 9.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.024 4.024 4 H 0.093 0.907 5 C 0.022 3.978 6 O -0.383 6.383 7 N -0.250 5.250 8 C -0.118 4.118 9 C 0.110 3.890 10 H 0.063 0.937 11 C -0.535 4.535 12 H 0.065 0.935 13 C -0.176 4.176 14 N -0.545 5.545 15 Si 0.769 3.231 16 H -0.193 1.193 17 H -0.215 1.215 18 H -0.205 1.205 19 C -0.043 4.043 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.165 4.165 23 C -0.150 4.150 24 C -0.159 4.159 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.235 0.765 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.024 0.976 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.147 0.853 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.009 -3.285 -4.419 8.913 hybrid contribution -0.590 0.253 1.337 1.483 sum 6.419 -3.032 -3.083 7.740 Atomic orbital electron populations 1.21890 0.96867 1.00280 1.00926 1.21997 0.94819 0.97995 1.02347 1.21754 0.94096 0.92730 0.93869 0.90685 1.22101 0.92333 0.93688 0.89711 1.86446 1.26121 1.71911 1.53854 1.62183 1.28283 1.31834 1.02662 1.22451 1.00862 0.94516 0.93952 1.18792 0.86620 0.94515 0.89082 0.93675 1.21115 0.99257 1.16814 1.16303 0.93454 1.25550 0.95298 0.97490 0.99212 1.70045 1.02449 1.42257 1.39717 0.85748 0.77964 0.79419 0.79982 1.19282 1.21511 1.20547 1.20520 0.93361 0.95501 0.94917 1.20987 0.99556 0.97849 0.95293 1.21361 0.97317 1.00391 0.95956 1.21215 0.94191 1.00134 1.00942 1.21253 1.00102 0.98674 0.95006 1.21043 0.96685 1.01949 0.96189 0.94223 0.94165 0.92667 0.91092 0.91454 0.93955 0.92352 0.76462 0.93901 0.89328 0.97600 0.93176 0.87263 0.84514 0.83963 0.85267 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.13 71.98 0.59 -5.06 16 2 C -0.13 -4.67 4.59 30.59 0.14 -4.53 16 3 C 0.08 3.23 2.29 44.92 0.10 3.34 16 4 H 0.08 3.32 6.60 -2.38 -0.02 3.31 16 5 C 0.10 3.00 6.88 71.99 0.50 3.50 16 6 O -0.58 -15.42 10.33 -148.98 -1.54 -16.96 16 7 N -0.53 -22.09 4.03 -880.62 -3.55 -25.64 16 8 C 0.03 1.17 7.46 127.69 0.95 2.13 16 9 C 0.22 10.43 1.44 43.42 0.06 10.50 16 10 H 0.05 2.37 3.23 -2.39 -0.01 2.37 16 11 C -0.50 -26.28 6.93 25.60 0.18 -26.11 16 12 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 13 C 0.03 1.34 5.45 84.66 0.46 1.80 16 14 N -0.91 -50.34 12.84 21.45 0.28 -50.06 16 15 Si 0.94 43.12 29.54 68.60 2.03 45.14 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 19 C -0.04 -1.95 3.63 -19.87 -0.07 -2.02 16 20 C -0.12 -5.00 8.15 22.27 0.18 -4.82 16 21 C -0.13 -4.68 10.05 22.27 0.22 -4.46 16 22 C -0.15 -4.92 10.05 22.27 0.22 -4.69 16 23 C -0.13 -4.97 10.05 22.27 0.22 -4.75 16 24 C -0.14 -6.33 9.67 22.27 0.22 -6.12 16 25 H 0.04 1.80 7.74 -2.38 -0.02 1.78 16 26 H 0.04 1.75 4.72 -2.39 -0.01 1.74 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 2.46 5.67 -2.39 -0.01 2.44 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.39 6.40 9.12 -74.06 -0.68 5.72 16 33 H 0.04 1.70 6.38 -2.38 -0.02 1.69 16 34 H 0.09 3.17 5.15 -2.38 -0.01 3.15 16 35 H 0.01 0.23 5.33 -2.39 -0.01 0.21 16 36 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.11 4.70 7.94 -2.91 -0.02 4.68 16 38 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 39 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 40 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.09 4.50 7.99 -2.91 -0.02 4.47 16 Total: -1.00 -60.53 315.57 1.54 -58.99 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.35 Total: 29.83 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 3.97 Total: -41.31 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -3.28 Total: -75.70 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -1.54 Total: -16.96 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -60.53 1.54 -58.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383114955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.703 kcal (2) G-P(sol) polarization free energy of solvation -60.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds