Wall clock time and date at job start Mon Mar 30 2020 07:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47275 * 2 1 4 4 C 1.53007 * 109.46546 * 119.99838 * 2 1 3 5 5 C 1.50703 * 109.46640 * 185.00400 * 4 2 1 6 6 C 1.38234 * 120.00257 * 90.00059 * 5 4 2 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 4 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 10 10 C 1.38234 * 119.99503 * 270.01660 * 5 4 2 11 11 N 1.46897 * 109.47162 * 239.99513 * 2 1 3 12 12 C 1.46891 * 111.00187 * 85.00382 * 11 2 1 13 13 C 1.53002 * 109.47372 * 179.97438 * 12 11 2 14 14 O 1.42901 * 109.46863 * 65.00001 * 13 12 11 15 15 C 1.42896 * 114.00213 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47538 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99589 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00242 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99831 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00273 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46982 * 89.99570 * 20 18 16 22 22 H 1.48491 * 109.47339 * 209.99789 * 20 18 16 23 23 H 1.48505 * 109.46973 * 330.00151 * 20 18 16 24 24 H 1.08996 * 109.47275 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47762 * 300.00681 * 1 2 3 26 26 H 1.09002 * 109.46968 * 60.00661 * 1 2 3 27 27 H 1.08988 * 109.47457 * 64.99925 * 4 2 1 28 28 H 1.09000 * 109.46671 * 304.99696 * 4 2 1 29 29 H 1.08002 * 119.99744 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 31 31 H 1.07999 * 119.99932 * 180.24104 * 8 7 6 32 32 H 1.08001 * 120.00310 * 179.72161 * 9 8 7 33 33 H 1.07997 * 120.00460 * 0.02562 * 10 5 4 34 34 H 1.00899 * 111.00166 * 321.04284 * 11 2 1 35 35 H 1.08999 * 109.47213 * 300.00005 * 12 11 2 36 36 H 1.09003 * 109.47194 * 59.99613 * 12 11 2 37 37 H 1.08997 * 109.47046 * 184.99657 * 13 12 11 38 38 H 1.08998 * 109.47069 * 305.00261 * 13 12 11 39 39 H 1.09002 * 109.47473 * 300.00297 * 15 14 13 40 40 H 1.09005 * 109.46993 * 60.00025 * 15 14 13 41 41 H 0.97004 * 119.99968 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5418 -0.6149 1.3129 6 6 4.1322 0.4494 1.9684 7 6 5.5099 0.5499 2.0217 8 6 6.2971 -0.4193 1.4288 9 6 5.7067 -1.4835 0.7732 10 6 4.3290 -1.5813 0.7153 11 7 2.0197 -0.6926 -1.1993 12 6 2.0826 0.2223 -2.3468 13 6 2.5964 -0.5332 -3.5741 14 8 1.6514 -1.5393 -3.9441 15 6 2.0368 -2.3070 -5.0860 16 6 0.9730 -3.3315 -5.3850 17 1 0.0905 -3.3902 -4.7652 18 6 1.1262 -4.1939 -6.4498 19 7 2.2006 -4.1220 -7.2048 20 14 -0.1922 -5.4644 -6.8201 21 1 -1.1903 -4.8842 -7.7540 22 1 0.4325 -6.6590 -7.4427 23 1 -0.8669 -5.8598 -5.5576 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 1.7515 -1.7714 1.2058 28 1 1.6052 -0.2616 2.1370 29 1 3.5171 1.2048 2.4347 30 1 5.9712 1.3837 2.5301 31 1 7.3735 -0.3428 1.4737 32 1 6.3217 -2.2385 0.3061 33 1 3.8678 -2.4124 0.2026 34 1 1.4496 -1.4980 -1.4099 35 1 1.0872 0.6161 -2.5525 36 1 2.7590 1.0460 -2.1182 37 1 2.7273 0.1641 -4.4015 38 1 3.5521 -1.0014 -3.3386 39 1 2.1560 -1.6462 -5.9447 40 1 2.9811 -2.8120 -4.8824 41 1 2.3083 -4.7285 -7.9542 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385241643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:39 Heat of formation + Delta-G solvation = -41.351815 kcal Electronic energy + Delta-G solvation = -19358.362136 eV Core-core repulsion = 16430.321358 eV Total energy + Delta-G solvation = -2928.040777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.31343 -37.51868 -36.22319 -33.06225 -32.41964 -30.75703 -30.56928 -27.76781 -26.50213 -26.25158 -22.47125 -22.34257 -21.83580 -21.23665 -20.41379 -16.75042 -16.40977 -15.82606 -15.67423 -15.27360 -14.92504 -14.53568 -14.42213 -14.05202 -13.87086 -13.39005 -13.28013 -13.02949 -12.47743 -12.38048 -12.05109 -11.97021 -11.83985 -11.51398 -11.17376 -10.97181 -10.82616 -10.80473 -10.76330 -10.68448 -10.49061 -9.99769 -9.10021 -8.81391 -8.79686 -8.55860 -8.15819 -8.08977 -6.10494 -4.12316 1.47702 1.54750 3.29980 3.35078 3.40083 3.90260 4.34813 4.36988 4.78015 4.94507 4.96514 5.05669 5.11783 5.19176 5.25958 5.31478 5.37321 5.49703 5.58456 5.63139 5.71299 5.71845 5.81711 5.86012 5.95751 6.10786 6.15836 6.19196 6.22804 6.28770 6.40562 6.55735 6.65025 6.80955 7.12889 7.13931 7.30992 7.45204 7.72665 7.79312 8.16188 8.59110 9.00976 9.52562 11.01022 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022797 B = 0.003830 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.948285 B = 7308.265479 C = 7798.994188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.073 0.927 4 C -0.071 4.071 5 C -0.063 4.063 6 C -0.126 4.126 7 C -0.127 4.127 8 C -0.131 4.131 9 C -0.122 4.122 10 C -0.087 4.087 11 N -0.677 5.677 12 C 0.069 3.931 13 C 0.063 3.937 14 O -0.399 6.399 15 C 0.197 3.803 16 C -0.514 4.514 17 H 0.065 0.935 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.355 0.645 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.003 0.997 40 H 0.006 0.994 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 9.478 18.164 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.022 4.022 3 H 0.091 0.909 4 C -0.109 4.109 5 C -0.063 4.063 6 C -0.144 4.144 7 C -0.145 4.145 8 C -0.149 4.149 9 C -0.140 4.140 10 C -0.105 4.105 11 N -0.310 5.310 12 C -0.061 4.061 13 C -0.015 4.015 14 O -0.319 6.319 15 C 0.123 3.877 16 C -0.553 4.553 17 H 0.083 0.917 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.734 3.266 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.174 0.826 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.023 0.977 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.980 9.434 18.252 20.928 hybrid contribution -1.184 -0.452 -0.831 1.515 sum 2.796 8.982 17.421 19.799 Atomic orbital electron populations 1.22514 0.97215 1.02511 1.01930 1.21509 0.92162 0.97746 0.90792 0.90867 1.20654 0.91397 1.01751 0.97095 1.19723 0.95413 0.94531 0.96644 1.20981 0.94732 0.98107 1.00618 1.21015 0.93894 0.98981 1.00645 1.21064 0.99421 0.95196 0.99200 1.21182 0.95233 0.98309 0.99313 1.21077 0.93150 0.99005 0.97226 1.60555 1.57502 1.09901 1.03015 1.21930 0.99491 0.94752 0.89899 1.22284 0.93376 0.91368 0.94467 1.87780 1.45021 1.48360 1.50722 1.20161 0.96046 0.89531 0.81943 1.21049 1.05475 1.15775 1.12955 0.91659 1.24946 0.96159 0.97667 0.95720 1.69967 1.27123 1.38512 1.18134 0.86349 0.81201 0.80447 0.78562 1.20518 1.21069 1.19642 0.92101 0.92480 0.92432 0.90785 0.91194 0.86789 0.86777 0.86755 0.86404 0.85706 0.82558 0.94913 0.91003 0.94391 0.93635 0.97920 0.97652 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.16 37.16 0.34 -1.63 16 2 C 0.09 1.02 2.58 -67.71 -0.17 0.85 16 3 H 0.07 0.85 7.80 -51.93 -0.40 0.44 16 4 C -0.07 -0.75 5.03 -27.88 -0.14 -0.89 16 5 C -0.06 -0.75 4.95 -104.62 -0.52 -1.27 16 6 C -0.13 -1.38 9.70 -39.58 -0.38 -1.77 16 7 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 8 C -0.13 -1.45 10.05 -39.59 -0.40 -1.85 16 9 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 10 C -0.09 -1.11 9.31 -39.58 -0.37 -1.48 16 11 N -0.68 -9.73 5.63 -106.73 -0.60 -10.33 16 12 C 0.07 1.05 5.90 -3.83 -0.02 1.02 16 13 C 0.06 1.19 6.28 37.16 0.23 1.42 16 14 O -0.40 -9.50 9.85 -35.23 -0.35 -9.85 16 15 C 0.20 5.45 5.69 36.01 0.20 5.65 16 16 C -0.51 -15.14 9.43 -34.44 -0.32 -15.47 16 17 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 20 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 27 H 0.07 0.81 8.08 -51.94 -0.42 0.39 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.11 0.97 8.06 -52.48 -0.42 0.54 16 31 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.35 5.69 8.03 -39.29 -0.32 5.37 16 35 H 0.03 0.50 7.44 -51.93 -0.39 0.12 16 36 H 0.07 0.98 8.06 -51.93 -0.42 0.57 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -30.79 343.45 -9.45 -40.23 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.95 Total: 1.74 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.44 Total: -17.52 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.14 Total: -36.61 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.35 Total: -9.85 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.79 -9.45 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385241643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.117 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds