Wall clock time and date at job start Mon Mar 30 2020 07:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47275 * 2 1 4 4 C 1.53007 * 109.46546 * 119.99838 * 2 1 3 5 5 C 1.50703 * 109.46640 * 185.00400 * 4 2 1 6 6 C 1.38234 * 120.00257 * 90.00059 * 5 4 2 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 4 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 10 10 C 1.38234 * 119.99503 * 270.01660 * 5 4 2 11 11 N 1.46897 * 109.47162 * 239.99513 * 2 1 3 12 12 C 1.46891 * 111.00187 * 85.00382 * 11 2 1 13 13 C 1.53002 * 109.47372 * 179.97438 * 12 11 2 14 14 O 1.42901 * 109.46863 * 65.00001 * 13 12 11 15 15 C 1.42896 * 114.00213 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47538 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99589 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00242 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99831 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00273 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46982 * 89.99570 * 20 18 16 22 22 H 1.48491 * 109.47339 * 209.99789 * 20 18 16 23 23 H 1.48505 * 109.46973 * 330.00151 * 20 18 16 24 24 H 1.08996 * 109.47275 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47762 * 300.00681 * 1 2 3 26 26 H 1.09002 * 109.46968 * 60.00661 * 1 2 3 27 27 H 1.08988 * 109.47457 * 64.99925 * 4 2 1 28 28 H 1.09000 * 109.46671 * 304.99696 * 4 2 1 29 29 H 1.08002 * 119.99744 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 31 31 H 1.07999 * 119.99932 * 180.24104 * 8 7 6 32 32 H 1.08001 * 120.00310 * 179.72161 * 9 8 7 33 33 H 1.07997 * 120.00460 * 0.02562 * 10 5 4 34 34 H 1.00899 * 111.00166 * 321.04284 * 11 2 1 35 35 H 1.08999 * 109.47213 * 300.00005 * 12 11 2 36 36 H 1.09003 * 109.47194 * 59.99613 * 12 11 2 37 37 H 1.08997 * 109.47046 * 184.99657 * 13 12 11 38 38 H 1.08998 * 109.47069 * 305.00261 * 13 12 11 39 39 H 1.09002 * 109.47473 * 300.00297 * 15 14 13 40 40 H 1.09005 * 109.46993 * 60.00025 * 15 14 13 41 41 H 0.97004 * 119.99968 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5418 -0.6149 1.3129 6 6 4.1322 0.4494 1.9684 7 6 5.5099 0.5499 2.0217 8 6 6.2971 -0.4193 1.4288 9 6 5.7067 -1.4835 0.7732 10 6 4.3290 -1.5813 0.7153 11 7 2.0197 -0.6926 -1.1993 12 6 2.0826 0.2223 -2.3468 13 6 2.5964 -0.5332 -3.5741 14 8 1.6514 -1.5393 -3.9441 15 6 2.0368 -2.3070 -5.0860 16 6 0.9730 -3.3315 -5.3850 17 1 0.0905 -3.3902 -4.7652 18 6 1.1262 -4.1939 -6.4498 19 7 2.2006 -4.1220 -7.2048 20 14 -0.1922 -5.4644 -6.8201 21 1 -1.1903 -4.8842 -7.7540 22 1 0.4325 -6.6590 -7.4427 23 1 -0.8669 -5.8598 -5.5576 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 1.7515 -1.7714 1.2058 28 1 1.6052 -0.2616 2.1370 29 1 3.5171 1.2048 2.4347 30 1 5.9712 1.3837 2.5301 31 1 7.3735 -0.3428 1.4737 32 1 6.3217 -2.2385 0.3061 33 1 3.8678 -2.4124 0.2026 34 1 1.4496 -1.4980 -1.4099 35 1 1.0872 0.6161 -2.5525 36 1 2.7590 1.0460 -2.1182 37 1 2.7273 0.1641 -4.4015 38 1 3.5521 -1.0014 -3.3386 39 1 2.1560 -1.6462 -5.9447 40 1 2.9811 -2.8120 -4.8824 41 1 2.3083 -4.7285 -7.9542 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385241643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:38 Heat of formation + Delta-G solvation = -59.396551 kcal Electronic energy + Delta-G solvation = -19359.144614 eV Core-core repulsion = 16430.321358 eV Total energy + Delta-G solvation = -2928.823256 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19999 -38.96652 -37.65999 -35.00364 -33.77880 -31.65869 -31.61813 -29.59813 -27.98712 -27.26391 -24.53178 -23.34653 -22.98633 -22.40193 -21.33258 -18.64689 -17.60598 -17.45280 -17.10262 -16.42836 -16.29131 -16.04731 -15.68348 -15.38499 -15.05992 -14.68790 -14.35318 -14.13108 -13.77817 -13.62069 -13.28919 -13.24249 -12.98334 -12.81499 -12.72947 -12.67317 -12.46763 -12.22024 -11.92632 -11.69159 -11.66894 -11.60272 -11.28699 -10.87724 -10.24040 -9.68254 -9.46130 -9.18532 -8.32604 -6.45265 0.60611 0.66370 1.39607 1.42509 1.54537 2.34105 3.01352 3.01985 3.20374 3.27215 3.89510 4.10313 4.18084 4.20747 4.28175 4.34398 4.38986 4.45130 4.50877 4.55620 4.65963 4.76368 4.78520 4.81447 4.87658 4.93786 5.00109 5.02883 5.11514 5.17802 5.28996 5.33336 5.37025 5.54102 5.70573 5.76571 5.91290 5.95027 6.20609 6.29370 6.49160 6.52756 6.80762 7.26769 8.79859 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022797 B = 0.003830 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.948285 B = 7308.265479 C = 7798.994188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.092 3.908 3 H 0.080 0.920 4 C -0.066 4.066 5 C -0.072 4.072 6 C -0.130 4.130 7 C -0.130 4.130 8 C -0.138 4.138 9 C -0.140 4.140 10 C -0.109 4.109 11 N -0.685 5.685 12 C 0.080 3.920 13 C 0.057 3.943 14 O -0.405 6.405 15 C 0.212 3.788 16 C -0.547 4.547 17 H 0.063 0.937 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.984 3.016 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.263 1.263 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.342 0.658 35 H 0.033 0.967 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.038 0.962 39 H -0.017 1.017 40 H -0.017 1.017 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 10.252 19.483 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.018 4.018 3 H 0.098 0.902 4 C -0.104 4.104 5 C -0.072 4.072 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.156 4.156 9 C -0.158 4.158 10 C -0.127 4.127 11 N -0.316 5.316 12 C -0.049 4.049 13 C -0.020 4.020 14 O -0.325 6.325 15 C 0.137 3.863 16 C -0.584 4.584 17 H 0.081 0.919 18 C -0.193 4.193 19 N -0.571 5.571 20 Si 0.807 3.193 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.187 1.187 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.160 0.840 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.001 0.999 40 H 0.001 0.999 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.166 10.235 19.592 22.330 hybrid contribution -0.834 -0.619 -1.192 1.581 sum 2.332 9.616 18.401 20.893 Atomic orbital electron populations 1.22450 0.96436 1.02212 1.02523 1.21561 0.92723 0.97771 0.89750 0.90183 1.20642 0.90828 1.01436 0.97481 1.19884 0.95944 0.94652 0.96752 1.21283 0.95282 0.98087 1.00120 1.21381 0.93976 0.99363 1.00068 1.21346 1.00632 0.94844 0.98773 1.21355 0.95181 0.99190 1.00046 1.21099 0.93809 0.99405 0.98382 1.60584 1.57808 1.09661 1.03590 1.21836 0.99818 0.94638 0.88597 1.22567 0.92541 0.90484 0.96441 1.87747 1.46378 1.49226 1.49191 1.19779 0.94831 0.89251 0.82468 1.21379 1.05998 1.17135 1.13931 0.91866 1.25976 0.98648 0.99653 0.94990 1.70079 1.29013 1.39450 1.18530 0.85172 0.78020 0.77406 0.78752 1.19302 1.19990 1.18743 0.92863 0.90147 0.93512 0.91612 0.88771 0.84489 0.84267 0.84898 0.86171 0.87365 0.83959 0.94839 0.88750 0.93817 0.94322 0.99921 0.99918 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 9.16 71.98 0.66 -2.87 16 2 C 0.09 1.98 2.58 44.92 0.12 2.09 16 3 H 0.08 1.65 7.80 -2.39 -0.02 1.63 16 4 C -0.07 -1.31 5.03 29.85 0.15 -1.16 16 5 C -0.07 -1.64 4.95 -19.87 -0.10 -1.74 16 6 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 7 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 8 C -0.14 -2.88 10.05 22.27 0.22 -2.66 16 9 C -0.14 -3.41 10.05 22.27 0.22 -3.18 16 10 C -0.11 -2.85 9.31 22.27 0.21 -2.64 16 11 N -0.69 -19.54 5.63 -491.58 -2.77 -22.30 16 12 C 0.08 2.40 5.90 86.31 0.51 2.91 16 13 C 0.06 2.19 6.28 71.98 0.45 2.64 16 14 O -0.41 -19.88 9.85 -148.98 -1.47 -21.35 16 15 C 0.21 12.13 5.69 71.24 0.41 12.54 16 16 C -0.55 -32.83 9.43 25.60 0.24 -32.59 16 17 H 0.06 3.73 7.81 -2.91 -0.02 3.70 16 18 C 0.01 0.33 5.46 84.65 0.46 0.80 16 19 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 20 Si 0.98 44.58 29.54 68.60 2.03 46.60 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.03 7.45 -2.39 -0.02 1.01 16 27 H 0.07 1.40 8.08 -2.39 -0.02 1.39 16 28 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 29 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.11 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.34 11.20 8.03 -89.69 -0.72 10.48 16 35 H 0.03 1.00 7.44 -2.39 -0.02 0.98 16 36 H 0.09 2.42 8.06 -2.39 -0.02 2.40 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 41 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -66.56 343.45 2.33 -64.23 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.26 Total: 19.62 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 3.99 Total: -30.42 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -2.48 Total: -78.68 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -1.47 Total: -21.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.56 2.33 -64.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385241643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.833 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds