Wall clock time and date at job start Mon Mar 30 2020 07:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 N 1.46910 * 109.47103 * 119.99496 * 2 1 3 5 5 C 1.50693 * 109.47660 * 239.99865 * 2 1 3 6 6 C 1.38169 * 120.02813 * 265.00139 * 5 2 1 7 7 C 1.38243 * 120.05455 * 179.97438 * 6 5 2 8 8 C 1.38295 * 120.11401 * 0.04496 * 7 6 5 9 9 C 1.38122 * 120.05026 * 359.97438 * 8 7 6 10 10 C 1.38712 * 120.02675 * 84.97373 * 5 2 1 11 11 O 1.35897 * 120.05621 * 0.04919 * 10 5 2 12 12 C 1.42904 * 116.99781 * 179.97438 * 11 10 5 13 13 C 1.53000 * 109.46835 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47032 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47028 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47070 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00089 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99937 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99907 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00015 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47142 * 89.99561 * 20 18 16 22 22 H 1.48492 * 109.47344 * 209.99790 * 20 18 16 23 23 H 1.48506 * 109.47089 * 330.00303 * 20 18 16 24 24 H 1.09005 * 109.46934 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47126 * 300.00030 * 1 2 3 26 26 H 1.08995 * 109.47087 * 60.00100 * 1 2 3 27 27 H 1.00908 * 110.99559 * 60.00672 * 4 2 1 28 28 H 1.00895 * 110.99701 * 183.95309 * 4 2 1 29 29 H 1.07998 * 119.97356 * 359.97438 * 6 5 2 30 30 H 1.07997 * 119.94707 * 180.02562 * 7 6 5 31 31 H 1.07997 * 119.97026 * 179.70067 * 8 7 6 32 32 H 1.08002 * 120.02294 * 179.97438 * 9 8 7 33 33 H 1.08993 * 109.47145 * 299.99865 * 12 11 10 34 34 H 1.08996 * 109.47124 * 60.00356 * 12 11 10 35 35 H 1.09001 * 109.47393 * 300.00560 * 13 12 11 36 36 H 1.09001 * 109.47290 * 60.00136 * 13 12 11 37 37 H 1.09004 * 109.47181 * 299.99610 * 14 13 12 38 38 H 1.08996 * 109.47237 * 60.00297 * 14 13 12 39 39 H 1.08998 * 109.47347 * 299.99660 * 15 14 13 40 40 H 1.09001 * 109.47616 * 59.99680 * 15 14 13 41 41 H 0.97002 * 120.00138 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0324 -0.7104 -1.2303 6 6 2.3612 -2.0510 -1.1689 7 6 2.8217 -2.7033 -2.2974 8 6 2.9554 -2.0162 -3.4901 9 6 2.6284 -0.6759 -3.5565 10 6 2.1647 -0.0191 -2.4256 11 8 1.8423 1.2996 -2.4885 12 6 2.0040 1.9474 -3.7520 13 6 1.5939 3.4162 -3.6281 14 6 1.7664 4.1097 -4.9809 15 6 1.3570 5.5787 -4.8569 16 6 1.5274 6.2619 -6.1893 17 1 1.8910 5.7041 -7.0396 18 6 1.2182 7.5989 -6.3230 19 7 0.7741 8.2778 -5.2880 20 14 1.4288 8.4456 -7.9747 21 1 0.1695 8.3316 -8.7536 22 1 1.7492 9.8794 -7.7587 23 1 2.5351 7.7987 -8.7251 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6962 -1.6480 1.2228 28 1 3.0261 -0.6500 1.2560 29 1 2.2584 -2.5896 -0.2385 30 1 3.0778 -3.7513 -2.2475 31 1 3.3199 -2.5269 -4.3691 32 1 2.7333 -0.1395 -4.4881 33 1 3.0474 1.8859 -4.0609 34 1 1.3755 1.4566 -4.4950 35 1 0.5504 3.4774 -3.3193 36 1 2.2221 3.9074 -2.8850 37 1 2.8099 4.0486 -5.2901 38 1 1.1380 3.6185 -5.7238 39 1 0.3136 5.6402 -4.5476 40 1 1.9857 6.0697 -4.1141 41 1 0.5569 9.2185 -5.3819 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385385318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:36 Heat of formation + Delta-G solvation = -41.971637 kcal Electronic energy + Delta-G solvation = -19095.499134 eV Core-core repulsion = 16167.431479 eV Total energy + Delta-G solvation = -2928.067655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47471 -37.90899 -35.87760 -34.78151 -32.48364 -30.42234 -30.34199 -28.92888 -28.49534 -25.21341 -23.79020 -22.58447 -21.54273 -20.56878 -20.05574 -18.13163 -16.57273 -16.25414 -16.14019 -16.05121 -15.62587 -14.70348 -14.48819 -14.43227 -14.13754 -13.71978 -13.41285 -12.96335 -12.56202 -12.27501 -12.00512 -11.93836 -11.76764 -11.59982 -11.56277 -11.19299 -10.99288 -10.93927 -10.58288 -10.48050 -10.47475 -9.73503 -9.38410 -9.18163 -9.09340 -8.93578 -8.36342 -8.23097 -6.01148 -4.03912 1.10404 1.28801 3.21782 3.30852 3.37208 3.40377 3.56417 4.36136 4.44789 4.51277 4.64654 4.83152 5.03264 5.14098 5.15472 5.20233 5.27195 5.30526 5.34631 5.44057 5.54025 5.69288 5.79742 5.91301 5.96370 6.03019 6.12692 6.15751 6.26045 6.32388 6.36599 6.62570 6.67045 6.82114 6.91407 7.05405 7.20534 7.42058 7.65765 7.79532 7.98627 8.40401 9.03176 9.60209 11.10191 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032325 B = 0.003123 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.991074 B = 8963.849135 C = 9667.668988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.136 3.864 3 H 0.095 0.905 4 N -0.840 5.840 5 C -0.155 4.155 6 C -0.089 4.089 7 C -0.161 4.161 8 C -0.083 4.083 9 C -0.207 4.207 10 C 0.145 3.855 11 O -0.310 6.310 12 C 0.059 3.941 13 C -0.116 4.116 14 C -0.107 4.107 15 C 0.022 3.978 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.336 0.664 28 H 0.342 0.658 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 -22.138 8.486 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.024 3.976 3 H 0.113 0.887 4 N -0.369 5.369 5 C -0.157 4.157 6 C -0.107 4.107 7 C -0.179 4.179 8 C -0.101 4.101 9 C -0.226 4.226 10 C 0.098 3.902 11 O -0.223 6.223 12 C -0.015 4.015 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.015 4.015 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.689 -21.260 9.115 23.287 hybrid contribution 0.715 -0.219 -1.985 2.121 sum 3.404 -21.479 7.130 22.886 Atomic orbital electron populations 1.21741 0.93473 1.01664 1.02553 1.20241 0.95729 0.97865 0.83770 0.88677 1.59035 1.16389 1.21174 1.40281 1.20234 1.05623 0.94470 0.95395 1.20728 0.98462 0.92950 0.98603 1.20958 1.03823 1.00029 0.93103 1.20948 0.97679 0.93639 0.97827 1.21374 1.06429 0.96335 0.98485 1.18885 0.93998 0.83825 0.93479 1.86106 1.81222 1.19345 1.35653 1.23103 1.00779 0.94539 0.83116 1.21693 1.02412 0.90565 1.00727 1.21583 1.00521 0.99168 0.93187 1.19087 0.96820 0.88496 0.97146 1.21251 1.43913 0.94824 0.96089 0.92711 1.25032 0.95276 0.97590 0.96594 1.69963 1.44859 1.08920 1.29658 0.86595 0.78444 0.78773 0.84189 1.20657 1.21192 1.19893 0.93142 0.91636 0.91679 0.84995 0.84538 0.85995 0.86152 0.85930 0.85194 0.92223 0.92191 0.91269 0.91288 0.93174 0.93166 0.96453 0.96449 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.47 37.16 0.35 -1.11 16 2 C 0.14 1.48 3.32 -68.86 -0.23 1.25 16 3 H 0.10 1.21 7.69 -51.93 -0.40 0.81 16 4 N -0.84 -7.49 8.83 -5.65 -0.05 -7.54 16 5 C -0.15 -1.76 5.06 -104.48 -0.53 -2.29 16 6 C -0.09 -0.85 9.27 -39.60 -0.37 -1.22 16 7 C -0.16 -1.50 10.04 -39.56 -0.40 -1.89 16 8 C -0.08 -0.83 10.04 -39.60 -0.40 -1.23 16 9 C -0.21 -2.45 9.04 -39.43 -0.36 -2.80 16 10 C 0.14 1.89 6.66 -39.22 -0.26 1.63 16 11 O -0.31 -4.48 9.27 -19.42 -0.18 -4.66 16 12 C 0.06 0.84 4.74 37.16 0.18 1.01 16 13 C -0.12 -1.96 5.58 -26.73 -0.15 -2.11 16 14 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 16 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 20 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.34 2.46 7.21 -39.29 -0.28 2.18 16 28 H 0.34 2.75 9.06 -39.29 -0.36 2.39 16 29 H 0.12 0.87 6.29 -52.49 -0.33 0.54 16 30 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.43 6.30 -52.49 -0.33 1.10 16 33 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 34 H 0.06 0.79 7.66 -51.93 -0.40 0.40 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -30.58 337.48 -8.96 -39.54 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.69 Total: 1.43 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -2.85 Total: -24.20 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.69 Total: -33.82 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.18 Total: -4.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.58 -8.96 -39.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.433 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds