Wall clock time and date at job start Mon Mar 30 2020 07:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 N 1.46910 * 109.47103 * 119.99496 * 2 1 3 5 5 C 1.50693 * 109.47660 * 239.99865 * 2 1 3 6 6 C 1.38169 * 120.02813 * 265.00139 * 5 2 1 7 7 C 1.38243 * 120.05455 * 179.97438 * 6 5 2 8 8 C 1.38295 * 120.11401 * 0.04496 * 7 6 5 9 9 C 1.38122 * 120.05026 * 359.97438 * 8 7 6 10 10 C 1.38712 * 120.02675 * 84.97373 * 5 2 1 11 11 O 1.35897 * 120.05621 * 0.04919 * 10 5 2 12 12 C 1.42904 * 116.99781 * 179.97438 * 11 10 5 13 13 C 1.53000 * 109.46835 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47032 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47028 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47070 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00089 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99937 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99907 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00015 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47142 * 89.99561 * 20 18 16 22 22 H 1.48492 * 109.47344 * 209.99790 * 20 18 16 23 23 H 1.48506 * 109.47089 * 330.00303 * 20 18 16 24 24 H 1.09005 * 109.46934 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47126 * 300.00030 * 1 2 3 26 26 H 1.08995 * 109.47087 * 60.00100 * 1 2 3 27 27 H 1.00908 * 110.99559 * 60.00672 * 4 2 1 28 28 H 1.00895 * 110.99701 * 183.95309 * 4 2 1 29 29 H 1.07998 * 119.97356 * 359.97438 * 6 5 2 30 30 H 1.07997 * 119.94707 * 180.02562 * 7 6 5 31 31 H 1.07997 * 119.97026 * 179.70067 * 8 7 6 32 32 H 1.08002 * 120.02294 * 179.97438 * 9 8 7 33 33 H 1.08993 * 109.47145 * 299.99865 * 12 11 10 34 34 H 1.08996 * 109.47124 * 60.00356 * 12 11 10 35 35 H 1.09001 * 109.47393 * 300.00560 * 13 12 11 36 36 H 1.09001 * 109.47290 * 60.00136 * 13 12 11 37 37 H 1.09004 * 109.47181 * 299.99610 * 14 13 12 38 38 H 1.08996 * 109.47237 * 60.00297 * 14 13 12 39 39 H 1.08998 * 109.47347 * 299.99660 * 15 14 13 40 40 H 1.09001 * 109.47616 * 59.99680 * 15 14 13 41 41 H 0.97002 * 120.00138 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0324 -0.7104 -1.2303 6 6 2.3612 -2.0510 -1.1689 7 6 2.8217 -2.7033 -2.2974 8 6 2.9554 -2.0162 -3.4901 9 6 2.6284 -0.6759 -3.5565 10 6 2.1647 -0.0191 -2.4256 11 8 1.8423 1.2996 -2.4885 12 6 2.0040 1.9474 -3.7520 13 6 1.5939 3.4162 -3.6281 14 6 1.7664 4.1097 -4.9809 15 6 1.3570 5.5787 -4.8569 16 6 1.5274 6.2619 -6.1893 17 1 1.8910 5.7041 -7.0396 18 6 1.2182 7.5989 -6.3230 19 7 0.7741 8.2778 -5.2880 20 14 1.4288 8.4456 -7.9747 21 1 0.1695 8.3316 -8.7536 22 1 1.7492 9.8794 -7.7587 23 1 2.5351 7.7987 -8.7251 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6962 -1.6480 1.2228 28 1 3.0261 -0.6500 1.2560 29 1 2.2584 -2.5896 -0.2385 30 1 3.0778 -3.7513 -2.2475 31 1 3.3199 -2.5269 -4.3691 32 1 2.7333 -0.1395 -4.4881 33 1 3.0474 1.8859 -4.0609 34 1 1.3755 1.4566 -4.4950 35 1 0.5504 3.4774 -3.3193 36 1 2.2221 3.9074 -2.8850 37 1 2.8099 4.0486 -5.2901 38 1 1.1380 3.6185 -5.7238 39 1 0.3136 5.6402 -4.5476 40 1 1.9857 6.0697 -4.1141 41 1 0.5569 9.2185 -5.3819 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385385318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:35 Heat of formation + Delta-G solvation = -60.046574 kcal Electronic energy + Delta-G solvation = -19096.282922 eV Core-core repulsion = 16167.431479 eV Total energy + Delta-G solvation = -2928.851443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36387 -38.87672 -36.68138 -36.49456 -34.43545 -31.49230 -31.18089 -30.24765 -29.50257 -26.90818 -24.77202 -23.89672 -22.61774 -21.98396 -21.21441 -19.07097 -18.45017 -17.42710 -17.27092 -16.86266 -16.59632 -16.41201 -15.62528 -15.48999 -15.17731 -14.76528 -14.39085 -14.29933 -14.06617 -13.70794 -13.34049 -13.09015 -12.90993 -12.84852 -12.69272 -12.58573 -12.37944 -12.29925 -11.99824 -11.82225 -11.74555 -11.41522 -11.36774 -11.14630 -10.56636 -9.95177 -9.69120 -9.10554 -8.21019 -6.32630 0.31505 0.46689 1.39687 1.41226 1.52339 2.19445 2.41197 2.76509 3.12197 3.62056 3.69855 3.84490 3.93909 4.00783 4.15358 4.21625 4.30528 4.34953 4.40050 4.50499 4.50821 4.54681 4.74446 4.77369 4.86427 4.99064 5.07795 5.10701 5.21491 5.23074 5.26677 5.37949 5.46945 5.51136 5.55272 5.72599 5.83927 5.85564 6.17574 6.22737 6.45655 6.58558 6.84887 7.36896 8.91048 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032325 B = 0.003123 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.991074 B = 8963.849135 C = 9667.668988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.140 3.860 3 H 0.070 0.930 4 N -0.838 5.838 5 C -0.164 4.164 6 C -0.088 4.088 7 C -0.157 4.157 8 C -0.088 4.088 9 C -0.220 4.220 10 C 0.114 3.886 11 O -0.327 6.327 12 C 0.070 3.930 13 C -0.108 4.108 14 C -0.093 4.093 15 C 0.022 3.978 16 C -0.545 4.545 17 H 0.063 0.937 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.348 0.652 28 H 0.348 0.652 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.059 0.941 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -24.469 7.672 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.028 3.972 3 H 0.088 0.912 4 N -0.369 5.369 5 C -0.166 4.166 6 C -0.106 4.106 7 C -0.175 4.175 8 C -0.106 4.106 9 C -0.239 4.239 10 C 0.068 3.932 11 O -0.241 6.241 12 C -0.005 4.005 13 C -0.146 4.146 14 C -0.131 4.131 15 C -0.015 4.015 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.009 0.991 40 H 0.009 0.991 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.483 -23.622 8.307 25.281 hybrid contribution 0.476 0.426 -1.656 1.775 sum 3.959 -23.196 6.651 24.453 Atomic orbital electron populations 1.21690 0.93500 1.02170 1.01693 1.20059 0.95666 0.96902 0.84603 0.91196 1.58974 1.16928 1.21899 1.39066 1.20399 1.05966 0.95362 0.94915 1.21053 0.97454 0.92149 0.99966 1.21368 1.02262 1.01370 0.92477 1.21291 0.97088 0.93014 0.99179 1.21541 1.06799 0.97344 0.98214 1.19190 0.95919 0.83264 0.94814 1.86046 1.82039 1.20644 1.35410 1.22844 1.01477 0.92583 0.83600 1.21469 1.01896 0.92587 0.98618 1.21343 1.00928 0.95620 0.95200 1.19017 0.94753 0.92148 0.95610 1.21726 1.43825 0.95542 0.97166 0.91898 1.26028 0.94766 0.98506 1.00779 1.70104 1.45846 1.09362 1.32180 0.85423 0.78936 0.77439 0.79106 1.19734 1.20802 1.18558 0.91885 0.91670 0.93350 0.83691 0.83864 0.83438 0.83247 0.83648 0.84951 0.91198 0.91148 0.92043 0.92107 0.92313 0.92264 0.99055 0.99069 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.47 71.98 0.68 -2.13 16 2 C 0.14 3.01 3.32 44.16 0.15 3.16 16 3 H 0.07 1.85 7.69 -2.39 -0.02 1.83 16 4 N -0.84 -13.80 8.83 -171.80 -1.52 -15.32 16 5 C -0.16 -3.58 5.06 -19.77 -0.10 -3.68 16 6 C -0.09 -1.45 9.27 22.25 0.21 -1.25 16 7 C -0.16 -2.40 10.04 22.28 0.22 -2.18 16 8 C -0.09 -1.54 10.04 22.26 0.22 -1.32 16 9 C -0.22 -4.92 9.04 22.37 0.20 -4.71 16 10 C 0.11 2.93 6.66 22.51 0.15 3.08 16 11 O -0.33 -9.63 9.27 -92.39 -0.86 -10.48 16 12 C 0.07 1.96 4.74 71.98 0.34 2.30 16 13 C -0.11 -3.72 5.58 30.59 0.17 -3.55 16 14 C -0.09 -3.76 5.15 30.59 0.16 -3.60 16 15 C 0.02 1.16 4.97 29.85 0.15 1.31 16 16 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 17 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 18 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 19 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 20 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.35 4.29 7.21 -89.69 -0.65 3.64 16 28 H 0.35 5.10 9.06 -89.70 -0.81 4.29 16 29 H 0.15 1.59 6.29 -2.91 -0.02 1.57 16 30 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.13 2.76 6.30 -2.91 -0.02 2.74 16 33 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 34 H 0.07 1.82 7.66 -2.39 -0.02 1.80 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -66.79 337.48 2.74 -64.05 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -0.45 Total: 16.00 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 3.25 Total: -43.26 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -1.23 Total: -72.73 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.86 Total: -10.48 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.79 2.74 -64.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.005 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds