Wall clock time and date at job start Mon Mar 30 2020 06:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47264 * 2 1 4 4 C 1.50697 * 109.47051 * 119.99984 * 2 1 3 5 5 O 1.21351 * 120.00206 * 270.00127 * 4 2 1 6 6 C 1.46456 * 120.00459 * 89.99573 * 4 2 1 7 7 C 1.46906 * 127.05716 * 0.02848 * 6 4 2 8 8 C 1.34350 * 106.35303 * 179.73331 * 7 6 4 9 9 N 1.36490 * 109.16525 * 359.97438 * 8 7 6 10 10 C 1.46506 * 124.77443 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46850 * 90.02647 * 10 9 8 12 12 C 1.52997 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47587 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47258 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99740 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99604 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00186 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46898 * 89.99835 * 18 16 14 20 20 H 1.48500 * 109.47115 * 209.99813 * 18 16 14 21 21 H 1.48493 * 109.47271 * 330.00108 * 18 16 14 22 22 C 1.34483 * 110.44647 * 0.02562 * 9 8 7 23 23 H 1.09005 * 109.46705 * 59.99917 * 1 2 3 24 24 H 1.08990 * 109.47397 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46676 * 300.00219 * 1 2 3 26 26 H 1.08996 * 109.46917 * 239.99854 * 2 1 3 27 27 H 1.08997 * 109.46869 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46883 * 300.00076 * 3 2 1 29 29 H 1.08996 * 109.47273 * 60.00072 * 3 2 1 30 30 H 1.08000 * 126.81784 * 359.73484 * 7 6 4 31 31 H 1.08003 * 125.41480 * 180.02562 * 8 7 6 32 32 H 1.09003 * 109.46765 * 210.02164 * 10 9 8 33 33 H 1.08997 * 109.47436 * 330.02863 * 10 9 8 34 34 H 1.09000 * 109.47636 * 299.99781 * 11 10 9 35 35 H 1.09001 * 109.47366 * 59.99745 * 11 10 9 36 36 H 1.08998 * 109.47412 * 300.00038 * 12 11 10 37 37 H 1.09001 * 109.46960 * 59.99732 * 12 11 10 38 38 H 1.08998 * 109.46776 * 300.00428 * 13 12 11 39 39 H 1.09001 * 109.47189 * 59.99873 * 13 12 11 40 40 H 0.97001 * 119.99632 * 180.02562 * 17 16 14 41 41 H 1.08000 * 125.91869 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2346 -0.0863 2.2513 6 6 2.2764 -2.1540 1.1943 7 6 2.0860 -3.0557 0.0502 8 6 2.4379 -4.2817 0.4722 9 7 2.8291 -4.2110 1.7779 10 6 3.2820 -5.3521 2.5775 11 6 4.7978 -5.5043 2.4362 12 6 5.2709 -6.6955 3.2716 13 6 6.7866 -6.8481 3.1299 14 6 7.2526 -8.0210 3.9533 15 1 6.5390 -8.6001 4.5206 16 6 8.5899 -8.3556 3.9815 17 7 8.9965 -9.3796 4.6997 18 14 9.8241 -7.3545 2.9997 19 1 10.3395 -6.2432 3.8390 20 1 10.9523 -8.2272 2.5864 21 1 9.1616 -6.7973 1.7932 22 6 2.7393 -2.9468 2.2275 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.7332 -2.7864 -0.9343 31 1 2.4157 -5.1801 -0.1269 32 1 3.0296 -5.1850 3.6246 33 1 2.7914 -6.2597 2.2258 34 1 5.0502 -5.6713 1.3891 35 1 5.2884 -4.5966 2.7878 36 1 5.0186 -6.5281 4.3187 37 1 4.7802 -7.6033 2.9204 38 1 7.0385 -7.0157 2.0827 39 1 7.2776 -5.9404 3.4808 40 1 9.9373 -9.6147 4.7198 41 1 2.9866 -2.6093 3.2232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385849722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:33 Heat of formation + Delta-G solvation = -23.371694 kcal Electronic energy + Delta-G solvation = -18802.713264 eV Core-core repulsion = 15875.452163 eV Total energy + Delta-G solvation = -2927.261101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30034 -39.15907 -35.62002 -34.56818 -33.12633 -31.61970 -29.27452 -28.85813 -27.38298 -25.76920 -24.10299 -21.97209 -21.40508 -20.28247 -19.81920 -18.79313 -17.47910 -16.76164 -15.68582 -15.27844 -15.05626 -14.92936 -14.52058 -14.18253 -13.95746 -13.65692 -13.16906 -12.84320 -12.78698 -12.68116 -12.64053 -12.34047 -12.12679 -11.97039 -11.84536 -11.35002 -11.31018 -11.14169 -11.02164 -10.75665 -10.04036 -9.85743 -9.74760 -9.55931 -9.26574 -8.66913 -8.59431 -8.38425 -6.10000 -4.08685 1.37602 2.32454 2.79597 3.24183 3.26898 3.34614 3.37686 4.10098 4.40251 4.64608 4.67924 4.83510 4.86956 4.89693 5.00665 5.10450 5.23910 5.27361 5.30243 5.38387 5.47306 5.54441 5.59034 5.63824 5.73862 5.78418 5.86405 5.94327 6.00877 6.07606 6.08986 6.38457 6.50860 6.66792 6.77139 7.00961 7.15645 7.19652 7.32710 7.70912 7.72816 8.46969 8.94215 9.52426 11.03376 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033782 B = 0.003006 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.653059 B = 9311.993074 C = 9664.057419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C -0.141 4.141 4 C 0.433 3.567 5 O -0.480 6.480 6 C -0.278 4.278 7 C -0.161 4.161 8 C -0.018 4.018 9 N -0.431 5.431 10 C 0.094 3.906 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.013 4.013 14 C -0.523 4.523 15 H 0.071 0.929 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.083 3.917 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.263 0.737 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.128 15.615 -11.372 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.198 4.198 4 C 0.313 3.687 5 O -0.357 6.357 6 C -0.286 4.286 7 C -0.184 4.184 8 C -0.145 4.145 9 N -0.104 5.104 10 C -0.026 4.026 11 C -0.175 4.175 12 C -0.138 4.138 13 C -0.051 4.051 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.055 4.055 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.764 15.516 -10.630 25.195 hybrid contribution 0.865 0.216 -0.552 1.049 sum -15.899 15.732 -11.182 25.006 Atomic orbital electron populations 1.21670 0.92799 1.02566 1.02437 1.21496 0.97719 0.97545 0.98500 1.21706 1.01248 0.94565 1.02277 1.21427 0.72333 0.86649 0.88273 1.90508 1.42448 1.68856 1.33883 1.21169 1.17181 0.94687 0.95571 1.21984 1.06441 0.91734 0.98247 1.21785 1.07412 0.99998 0.85260 1.44033 1.47807 1.07845 1.10672 1.22283 0.97260 0.87146 0.95947 1.22113 0.92126 1.01153 1.02079 1.21415 0.99040 0.94976 0.98384 1.19559 0.91324 0.97147 0.97050 1.21133 0.93808 1.12690 1.28494 0.91039 1.25045 0.98506 0.94904 0.95075 1.69916 1.15987 1.27519 1.40751 0.86767 0.81011 0.80267 0.81167 1.20258 1.21328 1.19073 1.22380 1.00348 0.83197 0.99585 0.91718 0.91910 0.92323 0.88877 0.92546 0.92175 0.91765 0.83788 0.81770 0.88900 0.88773 0.91550 0.91622 0.92437 0.92428 0.96640 0.97063 0.92682 0.81054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.18 37.16 0.34 -0.71 16 2 C -0.13 -1.22 2.99 -91.77 -0.27 -1.49 16 3 C -0.14 -1.24 8.79 37.16 0.33 -0.91 16 4 C 0.43 5.39 6.18 -31.00 -0.19 5.20 16 5 O -0.48 -7.40 16.75 5.50 0.09 -7.31 16 6 C -0.28 -3.43 6.29 -103.09 -0.65 -4.08 16 7 C -0.16 -1.68 10.44 -37.45 -0.39 -2.07 16 8 C -0.02 -0.19 11.31 -16.85 -0.19 -0.38 16 9 N -0.43 -4.98 2.68 -116.77 -0.31 -5.30 16 10 C 0.09 1.04 6.00 -4.04 -0.02 1.02 16 11 C -0.14 -1.93 5.54 -26.73 -0.15 -2.07 16 12 C -0.10 -1.78 5.15 -26.73 -0.14 -1.92 16 13 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 14 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 18 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 22 C 0.08 1.03 11.18 -16.40 -0.18 0.85 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.73 7.40 -51.93 -0.38 0.34 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 30 H 0.14 1.14 7.74 -52.49 -0.41 0.74 16 31 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 33 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -32.35 343.54 -8.05 -40.40 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -7.05 Total: -2.85 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -2.06 Total: -20.18 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.46 Total: -32.21 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.09 Total: -7.31 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.35 -8.05 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385849722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.029 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds