Wall clock time and date at job start Mon Mar 30 2020 06:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47264 * 2 1 4 4 C 1.50697 * 109.47051 * 119.99984 * 2 1 3 5 5 O 1.21351 * 120.00206 * 270.00127 * 4 2 1 6 6 C 1.46456 * 120.00459 * 89.99573 * 4 2 1 7 7 C 1.46906 * 127.05716 * 0.02848 * 6 4 2 8 8 C 1.34350 * 106.35303 * 179.73331 * 7 6 4 9 9 N 1.36490 * 109.16525 * 359.97438 * 8 7 6 10 10 C 1.46506 * 124.77443 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46850 * 90.02647 * 10 9 8 12 12 C 1.52997 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47587 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47258 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99740 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99604 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00186 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46898 * 89.99835 * 18 16 14 20 20 H 1.48500 * 109.47115 * 209.99813 * 18 16 14 21 21 H 1.48493 * 109.47271 * 330.00108 * 18 16 14 22 22 C 1.34483 * 110.44647 * 0.02562 * 9 8 7 23 23 H 1.09005 * 109.46705 * 59.99917 * 1 2 3 24 24 H 1.08990 * 109.47397 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46676 * 300.00219 * 1 2 3 26 26 H 1.08996 * 109.46917 * 239.99854 * 2 1 3 27 27 H 1.08997 * 109.46869 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46883 * 300.00076 * 3 2 1 29 29 H 1.08996 * 109.47273 * 60.00072 * 3 2 1 30 30 H 1.08000 * 126.81784 * 359.73484 * 7 6 4 31 31 H 1.08003 * 125.41480 * 180.02562 * 8 7 6 32 32 H 1.09003 * 109.46765 * 210.02164 * 10 9 8 33 33 H 1.08997 * 109.47436 * 330.02863 * 10 9 8 34 34 H 1.09000 * 109.47636 * 299.99781 * 11 10 9 35 35 H 1.09001 * 109.47366 * 59.99745 * 11 10 9 36 36 H 1.08998 * 109.47412 * 300.00038 * 12 11 10 37 37 H 1.09001 * 109.46960 * 59.99732 * 12 11 10 38 38 H 1.08998 * 109.46776 * 300.00428 * 13 12 11 39 39 H 1.09001 * 109.47189 * 59.99873 * 13 12 11 40 40 H 0.97001 * 119.99632 * 180.02562 * 17 16 14 41 41 H 1.08000 * 125.91869 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2346 -0.0863 2.2513 6 6 2.2764 -2.1540 1.1943 7 6 2.0860 -3.0557 0.0502 8 6 2.4379 -4.2817 0.4722 9 7 2.8291 -4.2110 1.7779 10 6 3.2820 -5.3521 2.5775 11 6 4.7978 -5.5043 2.4362 12 6 5.2709 -6.6955 3.2716 13 6 6.7866 -6.8481 3.1299 14 6 7.2526 -8.0210 3.9533 15 1 6.5390 -8.6001 4.5206 16 6 8.5899 -8.3556 3.9815 17 7 8.9965 -9.3796 4.6997 18 14 9.8241 -7.3545 2.9997 19 1 10.3395 -6.2432 3.8390 20 1 10.9523 -8.2272 2.5864 21 1 9.1616 -6.7973 1.7932 22 6 2.7393 -2.9468 2.2275 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.7332 -2.7864 -0.9343 31 1 2.4157 -5.1801 -0.1269 32 1 3.0296 -5.1850 3.6246 33 1 2.7914 -6.2597 2.2258 34 1 5.0502 -5.6713 1.3891 35 1 5.2884 -4.5966 2.7878 36 1 5.0186 -6.5281 4.3187 37 1 4.7802 -7.6033 2.9204 38 1 7.0385 -7.0157 2.0827 39 1 7.2776 -5.9404 3.4808 40 1 9.9373 -9.6147 4.7198 41 1 2.9866 -2.6093 3.2232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385849722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:33 Heat of formation + Delta-G solvation = -40.270110 kcal Electronic energy + Delta-G solvation = -18803.446034 eV Core-core repulsion = 15875.452163 eV Total energy + Delta-G solvation = -2927.993871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.15467 -40.09796 -36.98380 -35.35448 -34.87423 -33.12245 -30.34081 -30.05842 -28.03768 -27.08001 -25.25032 -23.31515 -22.18917 -21.86527 -20.66878 -19.64591 -18.90403 -18.35264 -16.63039 -16.41516 -16.28379 -15.95501 -15.82873 -15.34030 -14.96541 -14.76492 -14.47154 -14.15410 -13.93071 -13.62740 -13.57100 -13.38560 -13.33049 -12.93698 -12.91995 -12.65334 -12.49705 -12.17519 -12.01173 -11.81754 -11.79821 -11.56263 -11.44021 -11.32259 -10.78960 -10.47850 -9.54803 -9.25783 -8.32033 -6.35951 0.44144 1.33838 1.34889 1.46674 1.50719 1.93462 2.33395 2.36193 3.03623 3.30876 3.79635 3.87197 3.97515 4.01834 4.13294 4.19686 4.29031 4.34670 4.40338 4.56813 4.61954 4.72865 4.73916 4.79158 4.91261 4.94315 4.95601 5.07070 5.09079 5.10918 5.12795 5.25769 5.33755 5.36196 5.51728 5.57994 5.65032 5.84190 6.15016 6.25953 6.32637 6.72921 6.80148 7.29144 8.84679 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033782 B = 0.003006 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.653059 B = 9311.993074 C = 9664.057419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C -0.140 4.140 4 C 0.427 3.573 5 O -0.522 6.522 6 C -0.296 4.296 7 C -0.157 4.157 8 C -0.023 4.023 9 N -0.432 5.432 10 C 0.101 3.899 11 C -0.123 4.123 12 C -0.093 4.093 13 C -0.015 4.015 14 C -0.533 4.533 15 H 0.035 0.965 16 C 0.002 3.998 17 N -0.952 5.952 18 Si 0.950 3.050 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.247 1.247 22 C 0.062 3.938 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.113 0.887 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.171 0.829 31 H 0.191 0.809 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.013 0.987 40 H 0.266 0.734 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.977 16.685 -14.048 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C -0.198 4.198 4 C 0.311 3.689 5 O -0.402 6.402 6 C -0.304 4.304 7 C -0.180 4.180 8 C -0.149 4.149 9 N -0.105 5.105 10 C -0.020 4.020 11 C -0.162 4.162 12 C -0.131 4.131 13 C -0.052 4.052 14 C -0.571 4.571 15 H 0.053 0.947 16 C -0.195 4.195 17 N -0.592 5.592 18 Si 0.773 3.227 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.170 1.170 22 C -0.076 4.076 23 H 0.107 0.893 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.131 0.869 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.189 0.811 31 H 0.208 0.792 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.031 0.969 40 H 0.075 0.925 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.639 16.589 -13.327 27.640 hybrid contribution 1.081 -0.181 0.329 1.144 sum -16.558 16.409 -12.998 26.690 Atomic orbital electron populations 1.21671 0.91484 1.02973 1.02968 1.21552 0.98679 0.97341 0.97354 1.21717 1.00689 0.94625 1.02724 1.22039 0.71145 0.86957 0.88799 1.90488 1.44475 1.69645 1.35603 1.21441 1.17503 0.94950 0.96545 1.22318 1.05816 0.91133 0.98725 1.22323 1.06643 1.01114 0.84841 1.44057 1.47805 1.07418 1.11206 1.22191 0.95090 0.87934 0.96786 1.21888 0.94329 0.98792 1.01144 1.21248 0.95614 0.96999 0.99217 1.19549 0.94903 0.94793 0.95953 1.21548 0.93400 1.13775 1.28391 0.94693 1.26038 1.00944 0.96122 0.96362 1.70069 1.16648 1.29664 1.42852 0.85661 0.78200 0.78639 0.80156 1.19469 1.20937 1.17029 1.22528 1.01226 0.83945 0.99939 0.89348 0.91570 0.93627 0.86905 0.93458 0.89642 0.93361 0.81120 0.79201 0.88072 0.86734 0.91331 0.92402 0.92685 0.92080 0.96280 0.96887 0.92515 0.81354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.18 71.98 0.66 -1.09 16 2 C -0.13 -2.14 2.99 -11.54 -0.03 -2.18 16 3 C -0.14 -2.29 8.79 71.98 0.63 -1.66 16 4 C 0.43 10.44 6.18 27.83 0.17 10.61 16 5 O -0.52 -16.53 16.75 -3.25 -0.05 -16.58 16 6 C -0.30 -6.94 6.29 -18.87 -0.12 -7.05 16 7 C -0.16 -2.82 10.44 23.65 0.25 -2.57 16 8 C -0.02 -0.42 11.31 83.08 0.94 0.52 16 9 N -0.43 -9.04 2.68 -523.34 -1.40 -10.44 16 10 C 0.10 1.98 6.00 86.38 0.52 2.49 16 11 C -0.12 -3.21 5.54 30.59 0.17 -3.04 16 12 C -0.09 -3.18 5.15 30.59 0.16 -3.02 16 13 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 14 C -0.53 -30.32 9.66 25.60 0.25 -30.07 16 15 H 0.03 2.17 7.99 -2.91 -0.02 2.14 16 16 C 0.00 0.12 5.47 84.66 0.46 0.58 16 17 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 18 Si 0.95 44.25 27.47 68.60 1.88 46.13 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 22 C 0.06 1.48 11.18 84.28 0.94 2.43 16 23 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.11 1.41 7.40 -2.39 -0.02 1.39 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.93 7.85 -2.39 -0.02 0.91 16 30 H 0.17 2.01 7.74 -2.91 -0.02 1.99 16 31 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.10 1.84 8.13 -2.39 -0.02 1.82 16 33 H 0.11 1.83 8.13 -2.39 -0.02 1.81 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 39 H 0.01 0.57 7.57 -2.39 -0.02 0.56 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -71.59 343.54 6.76 -64.83 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.92 Total: 9.99 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 5.12 Total: -34.59 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -1.10 Total: -69.78 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.05 Total: -16.58 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -71.59 6.76 -64.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385849722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.560 kcal (2) G-P(sol) polarization free energy of solvation -71.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds