Wall clock time and date at job start Mon Mar 30 2020 07:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.46987 * 2 1 4 4 N 1.46895 * 109.47357 * 239.99901 * 2 1 3 5 5 C 1.50703 * 109.47436 * 119.99719 * 2 1 3 6 6 C 1.38294 * 119.97003 * 80.01905 * 5 2 1 7 7 C 1.38232 * 120.11124 * 179.97438 * 6 5 2 8 8 C 1.38173 * 120.05823 * 359.97438 * 7 6 5 9 9 C 1.38705 * 119.94203 * 359.76822 * 8 7 6 10 10 O 1.35904 * 120.05924 * 180.25551 * 9 8 7 11 11 C 1.42903 * 116.99671 * 0.25297 * 10 9 8 12 12 C 1.52991 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47383 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47617 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47526 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99596 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00162 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99940 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47126 * 59.99810 * 19 17 15 21 21 H 1.48497 * 109.47031 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47036 * 300.00249 * 19 17 15 23 23 C 1.38122 * 119.97497 * 260.00576 * 5 2 1 24 24 H 1.09008 * 109.47101 * 299.99938 * 1 2 3 25 25 H 1.08998 * 109.47343 * 59.99866 * 1 2 3 26 26 H 1.08996 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.00897 * 111.00535 * 176.04144 * 4 2 1 28 28 H 1.00900 * 111.00293 * 300.00260 * 4 2 1 29 29 H 1.08003 * 119.94130 * 0.02562 * 6 5 2 30 30 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.02588 * 180.02562 * 8 7 6 32 32 H 1.08996 * 109.46945 * 300.00498 * 11 10 9 33 33 H 1.09006 * 109.46787 * 59.99781 * 11 10 9 34 34 H 1.08996 * 109.47418 * 300.00504 * 12 11 10 35 35 H 1.09006 * 109.47277 * 60.00347 * 12 11 10 36 36 H 1.09004 * 109.47108 * 300.00327 * 13 12 11 37 37 H 1.09006 * 109.46629 * 59.99953 * 13 12 11 38 38 H 1.09004 * 109.46825 * 300.00105 * 14 13 12 39 39 H 1.08999 * 109.47189 * 59.99500 * 14 13 12 40 40 H 0.97002 * 119.99738 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.02504 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0323 -0.7103 1.2305 6 6 2.0669 -2.0924 1.2646 7 6 2.5277 -2.7470 2.3916 8 6 2.9555 -2.0215 3.4869 9 6 2.9269 -0.6352 3.4532 10 8 3.3520 0.0808 4.5273 11 6 3.8210 -0.6595 5.6560 12 6 4.2542 0.3099 6.7575 13 6 4.7558 -0.4828 7.9662 14 6 5.1884 0.4866 9.0681 15 6 5.6830 -0.2941 10.2584 16 1 5.6879 -1.3737 10.2318 17 6 6.1293 0.3699 11.3812 18 7 6.1238 1.6846 11.4134 19 14 6.7417 -0.5979 12.8569 20 1 7.8982 -1.4372 12.4531 21 1 7.1617 0.3430 13.9263 22 1 5.6514 -1.4689 13.3648 23 6 2.4582 0.0195 2.3231 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.0261 -0.6500 -1.2559 28 1 1.6961 -1.6479 -1.2227 29 1 1.7341 -2.6613 0.4090 30 1 2.5541 -3.8265 2.4156 31 1 3.3158 -2.5334 4.3670 32 1 3.0212 -1.2995 6.0285 33 1 4.6704 -1.2749 5.3593 34 1 5.0541 0.9496 6.3846 35 1 3.4051 0.9256 7.0542 36 1 3.9555 -1.1222 8.3390 37 1 5.6048 -1.0988 7.6698 38 1 5.9886 1.1263 8.6956 39 1 4.3392 1.1023 9.3643 40 1 6.4375 2.1517 12.2035 41 1 2.4308 1.0988 2.2960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385873363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:49 Heat of formation + Delta-G solvation = -45.049394 kcal Electronic energy + Delta-G solvation = -18609.850499 eV Core-core repulsion = 15681.649383 eV Total energy + Delta-G solvation = -2928.201116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36257 -38.36267 -35.66243 -34.70254 -32.49527 -31.10638 -29.83202 -29.01462 -28.63483 -25.26500 -23.64433 -22.80250 -21.87919 -20.40560 -20.11961 -17.87804 -16.62921 -16.35136 -16.16117 -16.14423 -15.62660 -14.99608 -14.57213 -14.41993 -14.13900 -13.70771 -13.38343 -13.10565 -12.60051 -12.41191 -12.25150 -11.92758 -11.86086 -11.67513 -11.50844 -11.37928 -10.98924 -10.91993 -10.61603 -10.48372 -10.47638 -9.73834 -9.39689 -9.31355 -9.10888 -8.97057 -8.36628 -8.29715 -6.01500 -4.04377 1.09336 1.27405 3.20378 3.31824 3.36386 3.38733 3.54566 4.20397 4.43650 4.46496 4.60599 4.80336 4.90944 5.00277 5.06878 5.15168 5.18093 5.32481 5.34130 5.35173 5.51480 5.53579 5.65542 5.80482 5.86223 5.95762 6.02155 6.13461 6.22303 6.30365 6.36574 6.58825 6.66417 6.75174 6.81450 7.04065 7.04919 7.42706 7.64920 7.78888 7.98115 8.39871 9.02461 9.59671 11.09811 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.055837 B = 0.002532 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.338895 B =11057.029763 C =11372.105343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.127 3.873 3 H 0.090 0.910 4 N -0.839 5.839 5 C -0.083 4.083 6 C -0.166 4.166 7 C -0.075 4.075 8 C -0.213 4.213 9 C 0.142 3.858 10 O -0.314 6.314 11 C 0.060 3.940 12 C -0.117 4.117 13 C -0.107 4.107 14 C 0.022 3.978 15 C -0.523 4.523 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.150 4.150 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.344 0.656 28 H 0.340 0.660 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 -6.566 -22.847 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.015 3.985 3 H 0.108 0.892 4 N -0.367 5.367 5 C -0.086 4.086 6 C -0.185 4.185 7 C -0.093 4.093 8 C -0.231 4.231 9 C 0.096 3.904 10 O -0.228 6.228 11 C -0.015 4.015 12 C -0.155 4.155 13 C -0.144 4.144 14 C -0.015 4.015 15 C -0.561 4.561 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.169 4.169 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.681 -5.648 -23.119 25.692 hybrid contribution 0.946 -1.430 1.784 2.474 sum -8.735 -7.078 -21.335 24.116 Atomic orbital electron populations 1.21791 0.93336 1.02308 1.02333 1.20445 0.95861 0.97660 0.84533 0.89152 1.59072 1.16641 1.21540 1.39475 1.20617 0.97598 0.94067 0.96274 1.20726 1.05010 0.93705 0.99013 1.20896 0.96273 0.99649 0.92503 1.21359 1.07641 0.93133 1.01013 1.19114 0.93227 0.90284 0.87772 1.86121 1.77111 1.36274 1.23261 1.23102 0.98210 0.95660 0.84531 1.21701 1.01749 0.98223 0.93798 1.21586 0.99440 0.99073 0.94350 1.19083 0.96539 0.94127 0.91780 1.21210 1.42375 0.93002 0.99542 0.92751 1.25033 0.95874 0.94884 0.98709 1.69954 1.47331 1.06758 1.29379 0.86646 0.79252 0.79747 0.82282 1.20240 1.21258 1.20244 1.20312 1.04483 1.00349 0.91764 0.91850 0.91517 0.92621 0.84352 0.84683 0.86503 0.85888 0.85236 0.92151 0.92174 0.91281 0.91279 0.93145 0.93149 0.96464 0.96460 0.92903 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.47 37.15 0.35 -0.68 16 2 C 0.13 1.00 3.59 -68.87 -0.25 0.76 16 3 H 0.09 0.72 8.00 -51.93 -0.42 0.31 16 4 N -0.84 -5.87 9.06 -5.66 -0.05 -5.93 16 5 C -0.08 -0.81 4.94 -104.64 -0.52 -1.32 16 6 C -0.17 -1.52 9.29 -39.56 -0.37 -1.88 16 7 C -0.08 -0.75 10.04 -39.61 -0.40 -1.14 16 8 C -0.21 -2.51 9.04 -39.43 -0.36 -2.87 16 9 C 0.14 1.89 6.69 -39.22 -0.26 1.63 16 10 O -0.31 -4.74 10.14 -19.44 -0.20 -4.94 16 11 C 0.06 0.86 4.74 37.15 0.18 1.04 16 12 C -0.12 -2.00 5.58 -26.73 -0.15 -2.15 16 13 C -0.11 -2.14 5.15 -26.73 -0.14 -2.28 16 14 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.15 -1.75 9.61 -39.43 -0.38 -2.13 16 24 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.34 2.22 9.06 -39.29 -0.36 1.86 16 28 H 0.34 2.03 7.34 -39.29 -0.29 1.74 16 29 H 0.12 0.81 6.66 -52.48 -0.35 0.46 16 30 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 31 H 0.13 1.43 6.30 -52.49 -0.33 1.10 16 32 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 33 H 0.06 0.81 7.67 -51.93 -0.40 0.41 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 1.41 8.04 -52.49 -0.42 0.98 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -30.70 339.14 -8.99 -39.68 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.73 Total: -0.04 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -2.84 Total: -24.22 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.69 Total: -32.23 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.20 Total: -4.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.70 -8.99 -39.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385873363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.366 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds