Wall clock time and date at job start Mon Mar 30 2020 07:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.46987 * 2 1 4 4 N 1.46895 * 109.47357 * 239.99901 * 2 1 3 5 5 C 1.50703 * 109.47436 * 119.99719 * 2 1 3 6 6 C 1.38294 * 119.97003 * 80.01905 * 5 2 1 7 7 C 1.38232 * 120.11124 * 179.97438 * 6 5 2 8 8 C 1.38173 * 120.05823 * 359.97438 * 7 6 5 9 9 C 1.38705 * 119.94203 * 359.76822 * 8 7 6 10 10 O 1.35904 * 120.05924 * 180.25551 * 9 8 7 11 11 C 1.42903 * 116.99671 * 0.25297 * 10 9 8 12 12 C 1.52991 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47383 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47617 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47526 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99596 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00162 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99940 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47126 * 59.99810 * 19 17 15 21 21 H 1.48497 * 109.47031 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47036 * 300.00249 * 19 17 15 23 23 C 1.38122 * 119.97497 * 260.00576 * 5 2 1 24 24 H 1.09008 * 109.47101 * 299.99938 * 1 2 3 25 25 H 1.08998 * 109.47343 * 59.99866 * 1 2 3 26 26 H 1.08996 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.00897 * 111.00535 * 176.04144 * 4 2 1 28 28 H 1.00900 * 111.00293 * 300.00260 * 4 2 1 29 29 H 1.08003 * 119.94130 * 0.02562 * 6 5 2 30 30 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.02588 * 180.02562 * 8 7 6 32 32 H 1.08996 * 109.46945 * 300.00498 * 11 10 9 33 33 H 1.09006 * 109.46787 * 59.99781 * 11 10 9 34 34 H 1.08996 * 109.47418 * 300.00504 * 12 11 10 35 35 H 1.09006 * 109.47277 * 60.00347 * 12 11 10 36 36 H 1.09004 * 109.47108 * 300.00327 * 13 12 11 37 37 H 1.09006 * 109.46629 * 59.99953 * 13 12 11 38 38 H 1.09004 * 109.46825 * 300.00105 * 14 13 12 39 39 H 1.08999 * 109.47189 * 59.99500 * 14 13 12 40 40 H 0.97002 * 119.99738 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.02504 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0323 -0.7103 1.2305 6 6 2.0669 -2.0924 1.2646 7 6 2.5277 -2.7470 2.3916 8 6 2.9555 -2.0215 3.4869 9 6 2.9269 -0.6352 3.4532 10 8 3.3520 0.0808 4.5273 11 6 3.8210 -0.6595 5.6560 12 6 4.2542 0.3099 6.7575 13 6 4.7558 -0.4828 7.9662 14 6 5.1884 0.4866 9.0681 15 6 5.6830 -0.2941 10.2584 16 1 5.6879 -1.3737 10.2318 17 6 6.1293 0.3699 11.3812 18 7 6.1238 1.6846 11.4134 19 14 6.7417 -0.5979 12.8569 20 1 7.8982 -1.4372 12.4531 21 1 7.1617 0.3430 13.9263 22 1 5.6514 -1.4689 13.3648 23 6 2.4582 0.0195 2.3231 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.0261 -0.6500 -1.2559 28 1 1.6961 -1.6479 -1.2227 29 1 1.7341 -2.6613 0.4090 30 1 2.5541 -3.8265 2.4156 31 1 3.3158 -2.5334 4.3670 32 1 3.0212 -1.2995 6.0285 33 1 4.6704 -1.2749 5.3593 34 1 5.0541 0.9496 6.3846 35 1 3.4051 0.9256 7.0542 36 1 3.9555 -1.1222 8.3390 37 1 5.6048 -1.0988 7.6698 38 1 5.9886 1.1263 8.6956 39 1 4.3392 1.1023 9.3643 40 1 6.4375 2.1517 12.2035 41 1 2.4308 1.0988 2.2960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385873363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:48 Heat of formation + Delta-G solvation = -63.240375 kcal Electronic energy + Delta-G solvation = -18610.639319 eV Core-core repulsion = 15681.649383 eV Total energy + Delta-G solvation = -2928.989937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25778 -39.27089 -36.72944 -36.09950 -34.42914 -32.00884 -30.94731 -30.02895 -29.61420 -26.93810 -24.73095 -23.63271 -23.29063 -21.81196 -21.21710 -18.78866 -18.44258 -17.33484 -17.27639 -17.15927 -16.52907 -16.38226 -15.74854 -15.62169 -15.20151 -14.57974 -14.44463 -14.26996 -14.04548 -13.71024 -13.48324 -13.17724 -12.93970 -12.82804 -12.61756 -12.49152 -12.42514 -12.34022 -12.07430 -11.78877 -11.73287 -11.42142 -11.37386 -11.16360 -10.56415 -9.98497 -9.69322 -9.18091 -8.21177 -6.32915 0.28700 0.43686 1.39524 1.42827 1.50797 2.16263 2.40958 2.72984 3.11902 3.61552 3.73181 3.82645 3.92691 4.00430 4.09056 4.17826 4.29045 4.31619 4.38497 4.46440 4.49775 4.57136 4.69388 4.76644 4.91483 5.01055 5.06624 5.08058 5.20687 5.21770 5.29356 5.32728 5.43549 5.50489 5.53668 5.71924 5.79713 5.83794 6.18875 6.22252 6.43611 6.55762 6.84376 7.36560 8.90679 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.055837 B = 0.002532 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.338895 B =11057.029763 C =11372.105343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.130 3.870 3 H 0.087 0.913 4 N -0.838 5.838 5 C -0.080 4.080 6 C -0.160 4.160 7 C -0.077 4.077 8 C -0.224 4.224 9 C 0.113 3.887 10 O -0.335 6.335 11 C 0.069 3.931 12 C -0.110 4.110 13 C -0.093 4.093 14 C 0.022 3.978 15 C -0.545 4.545 16 H 0.063 0.937 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.266 1.266 23 C -0.165 4.165 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.348 0.652 28 H 0.347 0.653 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.059 0.941 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 -8.867 -23.966 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 H 0.105 0.895 4 N -0.368 5.368 5 C -0.082 4.082 6 C -0.179 4.179 7 C -0.095 4.095 8 C -0.242 4.242 9 C 0.067 3.933 10 O -0.250 6.250 11 C -0.005 4.005 12 C -0.147 4.147 13 C -0.131 4.131 14 C -0.015 4.015 15 C -0.583 4.583 16 H 0.082 0.918 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.190 1.190 23 C -0.184 4.184 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.097 -7.967 -24.264 27.462 hybrid contribution 1.034 -0.694 2.022 2.375 sum -9.063 -8.661 -22.242 25.531 Atomic orbital electron populations 1.21770 0.92757 1.02635 1.02359 1.20426 0.96225 0.97467 0.84095 0.89499 1.59065 1.17024 1.22090 1.38586 1.20848 0.96699 0.94525 0.96101 1.21079 1.03606 0.93584 0.99591 1.21241 0.95337 1.00978 0.91938 1.21525 1.08077 0.92609 1.02030 1.19385 0.95011 0.91151 0.87719 1.86048 1.77914 1.37106 1.23900 1.22868 0.99090 0.94619 0.83935 1.21489 1.01132 0.98298 0.93813 1.21345 1.00065 0.98012 0.93644 1.19017 0.94623 0.94584 0.93320 1.21693 1.42371 0.93715 1.00534 0.91850 1.26038 0.95985 0.95929 1.02187 1.70099 1.48314 1.08648 1.30438 0.85467 0.79077 0.78277 0.78031 1.19038 1.20937 1.19049 1.20492 1.05094 1.00644 0.92184 0.92316 0.91038 0.92122 0.83939 0.83821 0.83806 0.83345 0.84800 0.90988 0.90998 0.92058 0.92063 0.92212 0.92210 0.99085 0.99080 0.92757 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.47 71.98 0.68 -1.10 16 2 C 0.13 1.85 3.59 44.17 0.16 2.01 16 3 H 0.09 1.31 8.00 -2.38 -0.02 1.29 16 4 N -0.84 -9.86 9.06 -171.81 -1.56 -11.41 16 5 C -0.08 -1.41 4.94 -19.88 -0.10 -1.51 16 6 C -0.16 -2.50 9.29 22.28 0.21 -2.29 16 7 C -0.08 -1.34 10.04 22.25 0.22 -1.11 16 8 C -0.22 -4.98 9.04 22.37 0.20 -4.78 16 9 C 0.11 2.96 6.69 22.51 0.15 3.11 16 10 O -0.34 -10.19 10.14 -92.47 -0.94 -11.12 16 11 C 0.07 1.97 4.74 71.98 0.34 2.31 16 12 C -0.11 -3.79 5.58 30.59 0.17 -3.62 16 13 C -0.09 -3.74 5.15 30.59 0.16 -3.58 16 14 C 0.02 1.15 4.97 29.85 0.15 1.30 16 15 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 16 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 17 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 18 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 19 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C -0.16 -3.80 9.61 22.37 0.21 -3.59 16 24 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.35 3.77 9.06 -89.70 -0.81 2.96 16 28 H 0.35 3.14 7.34 -89.69 -0.66 2.48 16 29 H 0.14 1.44 6.66 -2.91 -0.02 1.42 16 30 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.13 2.76 6.30 -2.91 -0.02 2.74 16 32 H 0.07 1.86 7.65 -2.39 -0.02 1.84 16 33 H 0.07 1.85 7.67 -2.38 -0.02 1.83 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 38 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.13 2.85 8.04 -2.91 -0.02 2.83 16 Total: -1.00 -66.50 339.14 2.61 -63.88 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -0.46 Total: 13.24 kcal Atomic # 6 Polarization: -46.81 SS G_CDS: 3.25 Total: -43.55 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -1.27 Total: -68.78 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.94 Total: -11.12 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -66.50 2.61 -63.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385873363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.642 kcal (2) G-P(sol) polarization free energy of solvation -66.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds