Wall clock time and date at job start Mon Mar 30 2020 06:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 H 1.09005 * 109.46669 * 304.99662 * 3 2 1 5 5 C 1.52996 * 109.47496 * 64.99829 * 3 2 1 6 6 C 1.52998 * 109.47106 * 185.00156 * 3 2 1 7 7 C 1.53006 * 109.47233 * 175.00009 * 6 3 2 8 8 N 1.46497 * 109.47241 * 179.97438 * 7 6 3 9 9 C 1.39669 * 120.00062 * 179.97438 * 8 7 6 10 10 C 1.39009 * 120.03952 * 359.72818 * 9 8 7 11 11 C 1.38148 * 120.06013 * 179.73769 * 10 9 8 12 12 C 1.38171 * 120.14590 * 0.51367 * 11 10 9 13 13 C 1.38913 * 120.07646 * 359.76253 * 12 11 10 14 14 O 1.35750 * 120.02966 * 179.97438 * 13 12 11 15 15 C 1.34835 * 116.99916 * 174.48500 * 14 13 12 16 16 H 1.08003 * 120.00215 * 5.06475 * 15 14 13 17 17 C 1.38651 * 120.00024 * 185.06035 * 15 14 13 18 18 N 1.31563 * 120.00011 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00121 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47287 * 89.99678 * 19 17 15 21 21 H 1.48504 * 109.47203 * 210.00048 * 19 17 15 22 22 H 1.48504 * 109.46984 * 329.99707 * 19 17 15 23 23 C 1.38755 * 120.04365 * 180.02562 * 9 8 7 24 24 H 1.08995 * 109.47216 * 300.00432 * 1 2 3 25 25 H 1.09000 * 109.47379 * 60.00555 * 1 2 3 26 26 H 1.08999 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47216 * 239.99568 * 2 1 3 28 28 H 1.09005 * 109.47300 * 119.99931 * 2 1 3 29 29 H 1.09003 * 109.47063 * 299.99931 * 5 3 2 30 30 H 1.08999 * 109.47073 * 180.02562 * 5 3 2 31 31 H 1.08994 * 109.47228 * 59.99755 * 5 3 2 32 32 H 1.09000 * 109.47277 * 294.99167 * 6 3 2 33 33 H 1.08999 * 109.47703 * 54.99672 * 6 3 2 34 34 H 1.09001 * 109.47000 * 299.99490 * 7 6 3 35 35 H 1.08999 * 109.47052 * 59.99264 * 7 6 3 36 36 H 0.96996 * 120.00011 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.96628 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.92667 * 180.23522 * 11 10 9 39 39 H 1.08003 * 119.96138 * 179.74414 * 12 11 10 40 40 H 0.96994 * 119.99820 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.06368 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0645 2.8850 -0.2512 8 7 5.5246 2.8867 -0.3710 9 6 6.2133 4.0951 -0.4988 10 6 5.5137 5.2961 -0.5181 11 6 6.1950 6.4919 -0.6391 12 6 7.5721 6.4976 -0.7519 13 6 8.2766 5.3004 -0.7390 14 8 9.6295 5.3071 -0.8504 15 6 10.2606 4.1232 -0.7162 16 1 9.6869 3.2143 -0.6108 17 6 11.6462 4.0725 -0.7137 18 7 12.2620 2.9172 -0.5833 19 14 12.6387 5.6446 -0.8956 20 1 12.9049 6.2200 0.4473 21 1 13.9272 5.3415 -1.5686 22 1 11.8728 6.6221 -1.7100 23 6 7.5962 4.0977 -0.6129 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1254 1.3968 30 1 1.9982 3.1544 1.3070 31 1 2.0698 1.5876 2.1491 32 1 4.0029 0.9836 0.7596 33 1 3.8571 0.8800 -1.0113 34 1 3.6264 3.3457 -1.1366 35 1 3.7722 3.4493 0.6344 36 1 6.0130 2.0488 -0.3615 37 1 4.4370 5.2947 -0.4346 38 1 5.6496 7.4240 -0.6500 39 1 8.1013 7.4339 -0.8504 40 1 13.2313 2.8819 -0.5812 41 1 8.1417 3.1657 -0.6025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394463338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:21 Heat of formation + Delta-G solvation = -25.721212 kcal Electronic energy + Delta-G solvation = -19063.673787 eV Core-core repulsion = 16136.310804 eV Total energy + Delta-G solvation = -2927.362984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.19180 -37.96055 -36.80735 -34.59922 -32.29585 -31.46098 -29.38760 -28.69176 -27.19310 -25.12544 -25.05537 -22.35765 -21.62080 -20.32987 -20.11338 -17.79832 -17.43634 -15.83841 -15.60128 -15.31434 -15.10697 -14.64178 -14.17137 -14.07187 -13.70734 -13.60497 -13.39341 -13.08790 -12.83806 -12.26089 -12.19364 -12.16390 -12.03397 -11.82241 -11.65307 -11.15764 -10.96970 -10.82559 -10.78773 -10.69487 -10.63154 -10.52891 -10.15790 -9.39423 -9.37113 -8.77596 -7.42455 -6.80145 -6.35461 -4.02092 2.33433 2.50989 3.26488 3.30118 3.45538 3.77979 4.29571 4.51840 4.60758 4.67352 4.70415 4.98144 5.01020 5.10586 5.18393 5.23990 5.31684 5.34244 5.46437 5.56208 5.66648 5.69142 5.75291 5.80366 5.85720 5.90791 5.94313 5.98348 6.17597 6.18522 6.21589 6.35678 6.55664 6.61902 7.01077 7.26532 7.31988 7.57008 7.85407 7.97197 8.10684 8.24160 9.00843 9.65805 10.72596 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.003438 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.294644 B = 8142.831907 C = 8884.323286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.072 0.928 5 C -0.152 4.152 6 C -0.128 4.128 7 C 0.130 3.870 8 N -0.754 5.754 9 C 0.248 3.752 10 C -0.273 4.273 11 C -0.041 4.041 12 C -0.239 4.239 13 C 0.196 3.804 14 O -0.219 6.219 15 C -0.386 4.386 16 H 0.105 0.895 17 C 0.062 3.938 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.292 4.292 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.396 0.604 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.278 0.722 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.195 -2.546 1.515 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.107 4.107 4 H 0.090 0.910 5 C -0.210 4.210 6 C -0.165 4.165 7 C 0.006 3.994 8 N -0.386 5.386 9 C 0.147 3.853 10 C -0.295 4.295 11 C -0.060 4.060 12 C -0.259 4.259 13 C 0.143 3.857 14 O -0.124 6.124 15 C -0.461 4.461 16 H 0.122 0.878 17 C -0.141 4.141 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.315 4.315 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.230 0.770 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.013 -2.436 1.495 20.216 hybrid contribution 0.721 0.024 -0.031 0.723 sum -19.291 -2.411 1.464 19.497 Atomic orbital electron populations 1.21822 0.95951 1.01444 1.01900 1.21574 0.95834 0.96284 1.02067 1.21086 0.94617 0.96305 0.98697 0.91000 1.21960 1.01164 1.00818 0.97020 1.21835 0.95464 0.96619 1.02631 1.21253 0.81168 0.96456 1.00561 1.44584 1.05129 1.05920 1.82964 1.17503 0.90529 0.85586 0.91723 1.20137 0.98252 0.91383 1.19776 1.20371 0.92999 0.96574 0.96052 1.20022 0.93626 0.95834 1.16447 1.18798 0.83399 0.92760 0.90758 1.83582 1.14879 1.34497 1.79404 1.20757 0.90571 0.83786 1.51029 0.87752 1.24461 0.95665 0.98119 0.95848 1.69650 1.09991 1.24246 1.48354 0.86187 0.78829 0.82799 0.79123 1.19942 1.20898 1.18327 1.20621 0.92165 0.99149 1.19586 0.92481 0.92803 0.92960 0.91996 0.91975 0.92573 0.92258 0.92656 0.91347 0.91398 0.92928 0.92548 0.77045 0.87720 0.87066 0.86952 0.91190 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.15 0.36 -0.65 16 2 C -0.12 -0.89 5.40 -26.73 -0.14 -1.03 16 3 C -0.09 -0.71 2.39 -90.62 -0.22 -0.93 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.15 -1.20 8.70 37.16 0.32 -0.88 16 6 C -0.13 -1.22 4.80 -26.73 -0.13 -1.35 16 7 C 0.13 1.56 4.67 -4.04 -0.02 1.54 16 8 N -0.75 -11.61 5.73 -58.65 -0.34 -11.94 16 9 C 0.25 4.73 6.65 -83.81 -0.56 4.17 16 10 C -0.27 -4.84 9.31 -39.33 -0.37 -5.21 16 11 C -0.04 -0.74 10.03 -39.64 -0.40 -1.13 16 12 C -0.24 -4.98 9.99 -39.36 -0.39 -5.37 16 13 C 0.20 4.72 6.64 -39.14 -0.26 4.46 16 14 O -0.22 -5.96 8.58 0.03 0.00 -5.96 16 15 C -0.39 -11.13 9.94 30.88 0.31 -10.82 16 16 H 0.11 3.08 5.43 -52.48 -0.29 2.79 16 17 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 18 N -0.88 -25.96 13.96 55.48 0.77 -25.19 16 19 Si 0.90 22.13 28.62 -169.99 -4.86 17.26 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.29 -6.55 9.01 -39.20 -0.35 -6.90 16 24 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 30 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.64 7.94 -51.93 -0.41 0.22 16 35 H 0.06 0.68 6.38 -51.93 -0.33 0.35 16 36 H 0.40 5.79 8.48 -40.82 -0.35 5.45 16 37 H 0.10 1.60 6.73 -52.49 -0.35 1.25 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.11 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.13 3.06 5.64 -52.49 -0.30 2.76 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -30.12 330.77 -7.79 -37.91 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.41 Total: 5.38 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -1.94 Total: -22.44 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.44 Total: -37.13 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: 0.00 Total: -5.96 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.12 -7.79 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394463338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.186 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds