Wall clock time and date at job start Mon Mar 30 2020 06:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 H 1.09005 * 109.46669 * 304.99662 * 3 2 1 5 5 C 1.52996 * 109.47496 * 64.99829 * 3 2 1 6 6 C 1.52998 * 109.47106 * 185.00156 * 3 2 1 7 7 C 1.53006 * 109.47233 * 175.00009 * 6 3 2 8 8 N 1.46497 * 109.47241 * 179.97438 * 7 6 3 9 9 C 1.39669 * 120.00062 * 179.97438 * 8 7 6 10 10 C 1.39009 * 120.03952 * 359.72818 * 9 8 7 11 11 C 1.38148 * 120.06013 * 179.73769 * 10 9 8 12 12 C 1.38171 * 120.14590 * 0.51367 * 11 10 9 13 13 C 1.38913 * 120.07646 * 359.76253 * 12 11 10 14 14 O 1.35750 * 120.02966 * 179.97438 * 13 12 11 15 15 C 1.34835 * 116.99916 * 174.48500 * 14 13 12 16 16 H 1.08003 * 120.00215 * 5.06475 * 15 14 13 17 17 C 1.38651 * 120.00024 * 185.06035 * 15 14 13 18 18 N 1.31563 * 120.00011 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00121 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47287 * 89.99678 * 19 17 15 21 21 H 1.48504 * 109.47203 * 210.00048 * 19 17 15 22 22 H 1.48504 * 109.46984 * 329.99707 * 19 17 15 23 23 C 1.38755 * 120.04365 * 180.02562 * 9 8 7 24 24 H 1.08995 * 109.47216 * 300.00432 * 1 2 3 25 25 H 1.09000 * 109.47379 * 60.00555 * 1 2 3 26 26 H 1.08999 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47216 * 239.99568 * 2 1 3 28 28 H 1.09005 * 109.47300 * 119.99931 * 2 1 3 29 29 H 1.09003 * 109.47063 * 299.99931 * 5 3 2 30 30 H 1.08999 * 109.47073 * 180.02562 * 5 3 2 31 31 H 1.08994 * 109.47228 * 59.99755 * 5 3 2 32 32 H 1.09000 * 109.47277 * 294.99167 * 6 3 2 33 33 H 1.08999 * 109.47703 * 54.99672 * 6 3 2 34 34 H 1.09001 * 109.47000 * 299.99490 * 7 6 3 35 35 H 1.08999 * 109.47052 * 59.99264 * 7 6 3 36 36 H 0.96996 * 120.00011 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.96628 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.92667 * 180.23522 * 11 10 9 39 39 H 1.08003 * 119.96138 * 179.74414 * 12 11 10 40 40 H 0.96994 * 119.99820 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.06368 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0645 2.8850 -0.2512 8 7 5.5246 2.8867 -0.3710 9 6 6.2133 4.0951 -0.4988 10 6 5.5137 5.2961 -0.5181 11 6 6.1950 6.4919 -0.6391 12 6 7.5721 6.4976 -0.7519 13 6 8.2766 5.3004 -0.7390 14 8 9.6295 5.3071 -0.8504 15 6 10.2606 4.1232 -0.7162 16 1 9.6869 3.2143 -0.6108 17 6 11.6462 4.0725 -0.7137 18 7 12.2620 2.9172 -0.5833 19 14 12.6387 5.6446 -0.8956 20 1 12.9049 6.2200 0.4473 21 1 13.9272 5.3415 -1.5686 22 1 11.8728 6.6221 -1.7100 23 6 7.5962 4.0977 -0.6129 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1254 1.3968 30 1 1.9982 3.1544 1.3070 31 1 2.0698 1.5876 2.1491 32 1 4.0029 0.9836 0.7596 33 1 3.8571 0.8800 -1.0113 34 1 3.6264 3.3457 -1.1366 35 1 3.7722 3.4493 0.6344 36 1 6.0130 2.0488 -0.3615 37 1 4.4370 5.2947 -0.4346 38 1 5.6496 7.4240 -0.6500 39 1 8.1013 7.4339 -0.8504 40 1 13.2313 2.8819 -0.5812 41 1 8.1417 3.1657 -0.6025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394463338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:20 Heat of formation + Delta-G solvation = -42.895240 kcal Electronic energy + Delta-G solvation = -19064.418509 eV Core-core repulsion = 16136.310804 eV Total energy + Delta-G solvation = -2928.107705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87478 -39.15641 -38.07990 -35.87823 -34.38791 -32.43643 -30.81531 -29.99190 -28.24492 -27.11523 -25.89695 -23.54805 -23.01697 -21.82790 -20.81360 -19.77641 -19.10563 -17.26546 -16.82711 -16.46661 -16.37335 -15.87986 -15.67931 -15.57799 -15.26574 -14.83234 -14.59110 -14.28574 -14.09580 -13.85685 -13.74902 -13.24282 -12.83937 -12.81630 -12.64755 -12.55385 -12.48997 -12.12707 -12.00870 -11.95320 -11.53191 -11.42171 -11.36190 -11.28689 -10.97220 -10.64666 -9.17926 -8.48796 -8.25663 -6.21301 0.73281 0.88020 1.31617 1.36690 1.53167 2.29501 2.54594 2.82511 3.14910 3.25893 3.77740 3.93538 4.02438 4.20601 4.29097 4.38207 4.39565 4.57032 4.58561 4.61031 4.69884 4.75078 4.76678 4.87613 4.91998 5.01512 5.10144 5.11955 5.18617 5.21636 5.24900 5.29654 5.44194 5.46373 5.55157 5.57489 5.75035 5.84408 5.90484 6.17672 6.59185 6.82586 6.86302 7.63282 8.63148 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.003438 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.294644 B = 8142.831907 C = 8884.323286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.083 4.083 4 H 0.076 0.924 5 C -0.152 4.152 6 C -0.121 4.121 7 C 0.128 3.872 8 N -0.750 5.750 9 C 0.249 3.751 10 C -0.259 4.259 11 C -0.026 4.026 12 C -0.251 4.251 13 C 0.158 3.842 14 O -0.245 6.245 15 C -0.396 4.396 16 H 0.078 0.922 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.314 4.314 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.396 0.604 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.122 0.878 40 H 0.284 0.716 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.969 -0.982 1.603 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.102 4.102 4 H 0.094 0.906 5 C -0.209 4.209 6 C -0.159 4.159 7 C 0.004 3.996 8 N -0.380 5.380 9 C 0.145 3.855 10 C -0.281 4.281 11 C -0.045 4.045 12 C -0.272 4.272 13 C 0.109 3.891 14 O -0.152 6.152 15 C -0.473 4.473 16 H 0.095 0.905 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.187 1.187 23 C -0.338 4.338 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.159 0.841 38 H 0.176 0.824 39 H 0.140 0.860 40 H 0.094 0.906 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.854 -0.897 1.589 22.927 hybrid contribution 1.219 -0.517 -0.031 1.325 sum -21.635 -1.414 1.558 21.737 Atomic orbital electron populations 1.21813 0.95160 1.01860 1.02171 1.21564 0.96517 0.95750 1.01921 1.21053 0.93196 0.96884 0.99065 0.90552 1.21959 1.01877 1.00456 0.96629 1.21789 0.96628 0.95000 1.02478 1.21489 0.78678 0.98262 1.01142 1.44816 1.06707 1.04896 1.81535 1.17643 0.89411 0.87693 0.90776 1.20622 1.00037 0.90481 1.16985 1.20896 0.91748 0.98630 0.93186 1.20326 0.95072 0.94941 1.16864 1.19400 0.82609 0.94688 0.92447 1.83523 1.16609 1.33224 1.81888 1.20693 0.91082 0.83957 1.51537 0.90454 1.25293 0.96529 1.01480 0.95658 1.69734 1.10604 1.26157 1.50219 0.85206 0.77555 0.78491 0.79382 1.19037 1.19130 1.18737 1.20587 0.93949 0.97806 1.21448 0.92138 0.92573 0.92556 0.92165 0.92185 0.91534 0.92516 0.93024 0.91656 0.91501 0.92119 0.91793 0.76976 0.84056 0.82377 0.85965 0.90638 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 71.98 0.70 -0.98 16 2 C -0.12 -1.54 5.40 30.59 0.17 -1.38 16 3 C -0.08 -1.14 2.39 -10.80 -0.03 -1.17 16 4 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 5 C -0.15 -2.00 8.70 71.98 0.63 -1.38 16 6 C -0.12 -2.08 4.80 30.60 0.15 -1.93 16 7 C 0.13 2.71 4.67 86.38 0.40 3.11 16 8 N -0.75 -22.17 5.73 -339.47 -1.95 -24.12 16 9 C 0.25 9.21 6.65 38.20 0.25 9.46 16 10 C -0.26 -8.22 9.31 22.43 0.21 -8.01 16 11 C -0.03 -0.84 10.03 22.23 0.22 -0.61 16 12 C -0.25 -10.17 9.99 22.42 0.22 -9.94 16 13 C 0.16 7.83 6.64 22.56 0.15 7.98 16 14 O -0.25 -13.91 8.58 -22.79 -0.20 -14.10 16 15 C -0.40 -24.19 9.94 67.92 0.68 -23.51 16 16 H 0.08 4.97 5.43 -2.91 -0.02 4.95 16 17 C 0.01 0.49 5.49 84.83 0.47 0.96 16 18 N -0.93 -56.58 13.96 21.61 0.30 -56.28 16 19 Si 0.97 46.68 28.62 68.60 1.96 48.64 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 23 C -0.31 -14.62 9.01 22.52 0.20 -14.42 16 24 H 0.06 0.62 6.56 -2.39 -0.02 0.61 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.07 0.74 6.57 -2.39 -0.02 0.73 16 30 H 0.06 0.77 6.57 -2.39 -0.02 0.76 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.24 7.94 -2.39 -0.02 1.22 16 35 H 0.06 1.31 6.38 -2.39 -0.02 1.30 16 36 H 0.40 11.63 8.48 -92.71 -0.79 10.84 16 37 H 0.14 3.52 6.73 -2.91 -0.02 3.50 16 38 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 41 H 0.10 5.25 5.64 -2.91 -0.02 5.23 16 Total: -1.00 -68.00 330.77 4.77 -63.23 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.23 Total: 24.46 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 4.42 Total: -41.82 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -1.64 Total: -80.40 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.20 Total: -14.10 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.96 Total: 48.64 kcal Total: -68.00 4.77 -63.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394463338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.333 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds