Wall clock time and date at job start Mon Mar 30 2020 06:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47183 * 2 1 4 4 H 1.09000 * 109.46674 * 55.53873 * 3 2 1 5 5 C 1.52998 * 109.47352 * 295.54081 * 3 2 1 6 6 O 1.42898 * 109.47154 * 304.99586 * 5 3 2 7 7 C 1.42899 * 114.00166 * 179.97438 * 6 5 3 8 8 N 1.46894 * 109.47273 * 175.53843 * 3 2 1 9 9 C 1.46905 * 110.99705 * 273.57914 * 8 3 2 10 10 C 1.50703 * 109.46665 * 174.84743 * 9 8 3 11 11 C 1.38638 * 119.75035 * 269.72308 * 10 9 8 12 12 C 1.37617 * 120.24740 * 179.72196 * 11 10 9 13 13 C 1.40716 * 119.74484 * 0.57809 * 12 11 10 14 14 C 1.41397 * 120.24292 * 179.68198 * 13 12 11 15 15 H 1.08000 * 119.99893 * 26.07916 * 14 13 12 16 16 C 1.39943 * 119.99903 * 206.08301 * 14 13 12 17 17 N 1.30828 * 119.99862 * 16.53821 * 16 14 13 18 18 Si 1.86798 * 120.00155 * 196.53138 * 16 14 13 19 19 H 1.48509 * 109.46862 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46965 * 120.00056 * 18 16 14 21 21 H 1.48502 * 109.47403 * 240.00307 * 18 16 14 22 22 C 1.40715 * 119.51346 * 359.69611 * 13 12 11 23 23 C 1.37616 * 119.74336 * 0.02562 * 22 13 12 24 24 H 1.08997 * 109.46771 * 178.33792 * 1 2 3 25 25 H 1.08998 * 109.46916 * 58.33580 * 1 2 3 26 26 H 1.08998 * 109.46967 * 298.33223 * 1 2 3 27 27 H 1.08997 * 109.47547 * 120.00643 * 2 1 3 28 28 H 1.09009 * 109.46675 * 240.00766 * 2 1 3 29 29 H 1.09003 * 109.47690 * 64.99797 * 5 3 2 30 30 H 1.09000 * 109.46999 * 184.99482 * 5 3 2 31 31 H 1.08997 * 109.47387 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.47408 * 300.00310 * 7 6 5 33 33 H 1.08998 * 109.46968 * 60.00247 * 7 6 5 34 34 H 1.00896 * 111.00165 * 149.62732 * 8 3 2 35 35 H 1.09004 * 109.46952 * 294.84346 * 9 8 3 36 36 H 1.09000 * 109.47338 * 54.84921 * 9 8 3 37 37 H 1.07996 * 119.87237 * 359.97438 * 11 10 9 38 38 H 1.08004 * 120.12591 * 180.27743 * 12 11 10 39 39 H 0.97000 * 119.99770 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.12513 * 179.97438 * 22 13 12 41 41 H 1.08002 * 119.87462 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6129 1.9788 0.8473 5 6 1.6237 2.1307 -1.3015 6 8 2.0854 1.3632 -2.4150 7 6 1.7468 1.9214 -3.6861 8 7 3.5050 1.4439 0.1077 9 6 3.9295 1.3943 1.5132 10 6 5.4299 1.2697 1.5806 11 6 6.0154 0.0132 1.6048 12 6 7.3847 -0.1125 1.6605 13 6 8.1904 1.0403 1.7053 14 6 9.5981 0.9233 1.7694 15 1 10.0854 0.0441 1.3745 16 6 10.3597 1.9467 2.3447 17 7 9.7834 2.8441 3.1024 18 14 12.1992 2.0312 2.0311 19 1 12.6027 0.9082 1.1470 20 1 12.5306 3.3212 1.3744 21 1 12.9267 1.9316 3.3219 22 6 7.5849 2.3104 1.6860 23 6 6.2139 2.4122 1.6242 24 1 -0.3633 -1.0272 -0.0298 25 1 -0.3633 0.5395 -0.8747 26 1 -0.3633 0.4877 0.9046 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8902 29 1 0.5372 2.2090 -1.3398 30 1 2.0615 3.1281 -1.3412 31 1 2.1330 1.2807 -4.4788 32 1 0.6628 1.9950 -3.7735 33 1 2.1868 2.9146 -3.7755 34 1 3.9014 2.2443 -0.3616 35 1 3.6178 2.3080 2.0194 36 1 3.4712 0.5341 2.0011 37 1 5.3948 -0.8701 1.5757 38 1 7.8390 -1.0923 1.6748 39 1 10.3113 3.5537 3.5008 40 1 8.1938 3.2017 1.7203 41 1 5.7470 3.3860 1.6097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398984854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:15 Heat of formation + Delta-G solvation = -41.654756 kcal Electronic energy + Delta-G solvation = -19394.841962 eV Core-core repulsion = 16466.788048 eV Total energy + Delta-G solvation = -2928.053914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.65066 -37.57789 -35.98638 -33.87479 -32.48426 -30.10208 -29.21124 -28.39912 -26.44730 -25.44227 -23.91950 -22.88506 -20.91877 -19.95098 -19.77167 -17.22914 -16.47885 -16.10899 -15.91726 -15.19649 -14.67496 -14.32338 -14.20905 -13.93693 -13.70857 -13.25146 -13.08660 -12.51314 -12.25170 -12.03272 -11.87555 -11.67892 -11.61858 -11.50210 -11.30811 -11.02028 -10.87629 -10.77539 -10.42941 -10.37889 -10.26778 -9.66301 -9.48533 -9.32718 -9.09561 -7.93461 -7.38184 -7.21556 -6.70499 -4.29654 2.78269 3.10023 3.14599 3.16007 3.21675 3.76919 3.97506 4.47036 4.78443 4.88036 4.95332 5.19998 5.26073 5.30072 5.39924 5.45879 5.52421 5.58955 5.65794 5.76751 5.87405 5.95141 6.01389 6.09382 6.30147 6.36429 6.44008 6.48709 6.58873 7.00173 7.13121 7.13823 7.33417 7.43912 7.52167 7.68287 7.83486 7.95692 8.11903 8.20724 8.36956 8.70206 8.95794 9.04031 10.24693 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032137 B = 0.003652 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.063580 B = 7665.616352 C = 7981.035548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.088 3.912 4 H 0.049 0.951 5 C 0.060 3.940 6 O -0.369 6.369 7 C 0.030 3.970 8 N -0.672 5.672 9 C 0.123 3.877 10 C -0.207 4.207 11 C -0.069 4.069 12 C -0.226 4.226 13 C 0.112 3.888 14 C -0.465 4.465 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.798 5.798 18 Si 0.906 3.094 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.164 4.164 23 C -0.097 4.097 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.340 0.660 35 H 0.017 0.983 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.278 0.722 40 H 0.115 0.885 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.168 0.803 -6.637 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.022 4.022 4 H 0.067 0.933 5 C -0.017 4.017 6 O -0.287 6.287 7 C -0.067 4.067 8 N -0.304 5.304 9 C -0.004 4.004 10 C -0.208 4.208 11 C -0.088 4.088 12 C -0.246 4.246 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.423 5.423 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.183 4.183 23 C -0.116 4.116 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.159 0.841 35 H 0.035 0.965 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.133 0.867 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.958 0.162 -6.549 15.419 hybrid contribution 0.489 1.379 0.191 1.476 sum -13.469 1.541 -6.358 14.974 Atomic orbital electron populations 1.21818 0.96613 1.01408 1.01044 1.21415 0.93984 0.96146 1.03156 1.21625 0.90035 0.96685 0.93859 0.93297 1.22757 0.97738 0.94008 0.87190 1.88035 1.78580 1.49002 1.13105 1.22724 0.98835 0.98813 0.86325 1.60539 1.05723 1.48819 1.15332 1.20624 0.93941 0.98513 0.87346 1.18888 0.92324 0.93498 1.16137 1.20329 0.94313 0.95069 0.99078 1.20994 0.92976 0.97226 1.13386 1.17622 0.93100 0.90971 0.87335 1.19618 0.91641 1.03644 1.34546 0.90499 1.25889 1.01088 0.94425 0.92723 1.69838 1.38213 1.12185 1.22105 0.86296 0.82295 0.79263 0.79049 1.18424 1.19793 1.20076 1.21245 0.92824 0.98139 1.06086 1.20513 0.94406 0.95387 1.01247 0.92839 0.93030 0.93311 0.92067 0.90393 0.93071 0.93728 0.89729 0.94661 0.94352 0.84138 0.96492 0.92031 0.89493 0.89125 0.91087 0.86708 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.70 37.16 0.36 -1.17 16 2 C -0.11 -1.40 5.54 -26.73 -0.15 -1.55 16 3 C 0.09 1.16 2.49 -67.72 -0.17 0.99 16 4 H 0.05 0.61 7.84 -51.93 -0.41 0.21 16 5 C 0.06 0.70 5.09 37.16 0.19 0.89 16 6 O -0.37 -4.87 9.69 -35.23 -0.34 -5.21 16 7 C 0.03 0.29 11.01 101.05 1.11 1.40 16 8 N -0.67 -11.05 6.22 -107.99 -0.67 -11.72 16 9 C 0.12 2.22 5.57 -4.97 -0.03 2.19 16 10 C -0.21 -4.57 5.46 -104.32 -0.57 -5.14 16 11 C -0.07 -1.60 9.67 -39.66 -0.38 -1.99 16 12 C -0.23 -5.74 9.80 -38.87 -0.38 -6.12 16 13 C 0.11 3.06 5.56 -106.82 -0.59 2.47 16 14 C -0.46 -12.62 9.05 -37.74 -0.34 -12.96 16 15 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 16 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 17 N -0.80 -20.97 10.99 55.55 0.61 -20.36 16 18 Si 0.91 18.99 29.59 -169.99 -5.03 13.96 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 22 C -0.16 -4.32 8.68 -38.87 -0.34 -4.66 16 23 C -0.10 -2.27 9.67 -39.66 -0.38 -2.66 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.49 6.58 -51.93 -0.34 0.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.84 7.41 -51.93 -0.38 0.45 16 28 H 0.08 1.13 7.41 -51.92 -0.38 0.75 16 29 H 0.05 0.50 6.76 -51.93 -0.35 0.15 16 30 H 0.04 0.49 8.02 -51.93 -0.42 0.08 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.34 5.65 8.31 -39.29 -0.33 5.33 16 35 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 36 H 0.06 1.07 7.32 -51.93 -0.38 0.69 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.12 3.13 6.23 -52.49 -0.33 2.80 16 41 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -28.32 335.29 -8.81 -37.14 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.67 Total: 7.60 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -1.76 Total: -26.45 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: -0.06 Total: -32.08 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.34 Total: -5.21 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.32 -8.81 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398984854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.518 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds