Wall clock time and date at job start Mon Mar 30 2020 06:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47183 * 2 1 4 4 H 1.09000 * 109.46674 * 55.53873 * 3 2 1 5 5 C 1.52998 * 109.47352 * 295.54081 * 3 2 1 6 6 O 1.42898 * 109.47154 * 304.99586 * 5 3 2 7 7 C 1.42899 * 114.00166 * 179.97438 * 6 5 3 8 8 N 1.46894 * 109.47273 * 175.53843 * 3 2 1 9 9 C 1.46905 * 110.99705 * 273.57914 * 8 3 2 10 10 C 1.50703 * 109.46665 * 174.84743 * 9 8 3 11 11 C 1.38638 * 119.75035 * 269.72308 * 10 9 8 12 12 C 1.37617 * 120.24740 * 179.72196 * 11 10 9 13 13 C 1.40716 * 119.74484 * 0.57809 * 12 11 10 14 14 C 1.41397 * 120.24292 * 179.68198 * 13 12 11 15 15 H 1.08000 * 119.99893 * 26.07916 * 14 13 12 16 16 C 1.39943 * 119.99903 * 206.08301 * 14 13 12 17 17 N 1.30828 * 119.99862 * 16.53821 * 16 14 13 18 18 Si 1.86798 * 120.00155 * 196.53138 * 16 14 13 19 19 H 1.48509 * 109.46862 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46965 * 120.00056 * 18 16 14 21 21 H 1.48502 * 109.47403 * 240.00307 * 18 16 14 22 22 C 1.40715 * 119.51346 * 359.69611 * 13 12 11 23 23 C 1.37616 * 119.74336 * 0.02562 * 22 13 12 24 24 H 1.08997 * 109.46771 * 178.33792 * 1 2 3 25 25 H 1.08998 * 109.46916 * 58.33580 * 1 2 3 26 26 H 1.08998 * 109.46967 * 298.33223 * 1 2 3 27 27 H 1.08997 * 109.47547 * 120.00643 * 2 1 3 28 28 H 1.09009 * 109.46675 * 240.00766 * 2 1 3 29 29 H 1.09003 * 109.47690 * 64.99797 * 5 3 2 30 30 H 1.09000 * 109.46999 * 184.99482 * 5 3 2 31 31 H 1.08997 * 109.47387 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.47408 * 300.00310 * 7 6 5 33 33 H 1.08998 * 109.46968 * 60.00247 * 7 6 5 34 34 H 1.00896 * 111.00165 * 149.62732 * 8 3 2 35 35 H 1.09004 * 109.46952 * 294.84346 * 9 8 3 36 36 H 1.09000 * 109.47338 * 54.84921 * 9 8 3 37 37 H 1.07996 * 119.87237 * 359.97438 * 11 10 9 38 38 H 1.08004 * 120.12591 * 180.27743 * 12 11 10 39 39 H 0.97000 * 119.99770 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.12513 * 179.97438 * 22 13 12 41 41 H 1.08002 * 119.87462 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6129 1.9788 0.8473 5 6 1.6237 2.1307 -1.3015 6 8 2.0854 1.3632 -2.4150 7 6 1.7468 1.9214 -3.6861 8 7 3.5050 1.4439 0.1077 9 6 3.9295 1.3943 1.5132 10 6 5.4299 1.2697 1.5806 11 6 6.0154 0.0132 1.6048 12 6 7.3847 -0.1125 1.6605 13 6 8.1904 1.0403 1.7053 14 6 9.5981 0.9233 1.7694 15 1 10.0854 0.0441 1.3745 16 6 10.3597 1.9467 2.3447 17 7 9.7834 2.8441 3.1024 18 14 12.1992 2.0312 2.0311 19 1 12.6027 0.9082 1.1470 20 1 12.5306 3.3212 1.3744 21 1 12.9267 1.9316 3.3219 22 6 7.5849 2.3104 1.6860 23 6 6.2139 2.4122 1.6242 24 1 -0.3633 -1.0272 -0.0298 25 1 -0.3633 0.5395 -0.8747 26 1 -0.3633 0.4877 0.9046 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8902 29 1 0.5372 2.2090 -1.3398 30 1 2.0615 3.1281 -1.3412 31 1 2.1330 1.2807 -4.4788 32 1 0.6628 1.9950 -3.7735 33 1 2.1868 2.9146 -3.7755 34 1 3.9014 2.2443 -0.3616 35 1 3.6178 2.3080 2.0194 36 1 3.4712 0.5341 2.0011 37 1 5.3948 -0.8701 1.5757 38 1 7.8390 -1.0923 1.6748 39 1 10.3113 3.5537 3.5008 40 1 8.1938 3.2017 1.7203 41 1 5.7470 3.3860 1.6097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398984854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:15 Heat of formation + Delta-G solvation = -58.190736 kcal Electronic energy + Delta-G solvation = -19395.559016 eV Core-core repulsion = 16466.788048 eV Total energy + Delta-G solvation = -2928.770968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.84001 -39.18997 -37.17539 -35.62701 -33.84196 -31.69101 -31.12048 -29.58688 -27.77418 -26.62871 -24.95752 -24.42761 -22.85066 -21.60599 -20.94393 -19.19511 -17.39538 -17.35552 -17.00330 -16.82607 -15.94628 -15.77906 -15.61498 -15.33862 -14.99410 -14.75591 -14.32484 -14.09347 -13.78680 -13.43136 -13.18933 -13.01888 -13.01699 -12.67873 -12.59333 -12.43553 -12.36765 -12.29217 -11.91788 -11.67442 -11.36860 -11.33229 -11.22164 -10.99640 -10.50689 -9.36314 -9.22151 -9.09359 -8.61434 -6.31827 0.96288 1.17870 1.38161 1.50198 1.53614 2.22225 2.71307 2.93164 3.40607 3.82468 3.93358 4.03359 4.31694 4.35389 4.41219 4.45151 4.52673 4.58823 4.60218 4.63709 4.65894 4.70455 4.71191 4.88254 4.91247 5.04992 5.08391 5.18787 5.24874 5.37948 5.39856 5.49946 5.56273 5.74051 5.98316 6.12687 6.21739 6.26288 6.39678 6.43058 6.59258 6.72940 6.96899 7.06591 8.36375 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032137 B = 0.003652 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.063580 B = 7665.616352 C = 7981.035548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.086 3.914 4 H 0.063 0.937 5 C 0.061 3.939 6 O -0.399 6.399 7 C 0.025 3.975 8 N -0.684 5.684 9 C 0.132 3.868 10 C -0.194 4.194 11 C -0.075 4.075 12 C -0.244 4.244 13 C 0.079 3.921 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.035 3.965 17 N -0.829 5.829 18 Si 0.982 3.018 19 H -0.260 1.260 20 H -0.263 1.263 21 H -0.265 1.265 22 C -0.187 4.187 23 C -0.099 4.099 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.338 0.662 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.287 0.713 40 H 0.098 0.902 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.773 1.291 -7.057 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.023 4.023 4 H 0.081 0.919 5 C -0.015 4.015 6 O -0.318 6.318 7 C -0.071 4.071 8 N -0.316 5.316 9 C 0.004 3.996 10 C -0.196 4.196 11 C -0.093 4.093 12 C -0.263 4.263 13 C 0.077 3.923 14 C -0.535 4.535 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.456 5.456 18 Si 0.803 3.197 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.190 1.190 22 C -0.206 4.206 23 C -0.118 4.118 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.156 0.844 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.592 0.646 -6.974 17.093 hybrid contribution 0.813 1.201 0.292 1.480 sum -14.778 1.847 -6.682 16.324 Atomic orbital electron populations 1.21758 0.94316 1.02156 1.01959 1.21367 0.95961 0.95587 1.01513 1.21735 0.87811 0.97279 0.95468 0.91902 1.22781 0.99076 0.93652 0.86035 1.87991 1.79283 1.50081 1.14466 1.22873 1.00145 0.99009 0.85065 1.60439 1.08174 1.48991 1.13998 1.20506 0.90764 0.99596 0.88749 1.19354 0.94827 0.92481 1.12910 1.20631 0.93722 0.96585 0.98396 1.21190 0.94118 0.96962 1.14078 1.17959 0.93849 0.91932 0.88572 1.19842 0.92315 1.04782 1.36561 0.91033 1.26731 1.05897 0.93522 0.91760 1.69884 1.40265 1.12818 1.22622 0.85165 0.75982 0.79393 0.79172 1.18357 1.18809 1.18980 1.21225 0.94087 0.97328 1.07983 1.20780 0.93510 0.97141 1.00329 0.92273 0.92220 0.92210 0.93218 0.92497 0.90740 0.93255 0.89344 0.92818 0.93866 0.84392 0.95148 0.91174 0.87266 0.88914 0.90264 0.88396 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.70 71.98 0.70 -1.82 16 2 C -0.11 -2.52 5.54 30.60 0.17 -2.35 16 3 C 0.09 2.07 2.49 44.92 0.11 2.18 16 4 H 0.06 1.36 7.84 -2.39 -0.02 1.34 16 5 C 0.06 1.27 5.09 71.98 0.37 1.63 16 6 O -0.40 -9.83 9.69 -148.98 -1.44 -11.27 16 7 C 0.03 0.44 11.01 113.37 1.25 1.69 16 8 N -0.68 -21.18 6.22 -495.57 -3.08 -24.27 16 9 C 0.13 4.44 5.57 85.56 0.48 4.92 16 10 C -0.19 -8.39 5.46 -19.67 -0.11 -8.49 16 11 C -0.07 -3.44 9.67 22.22 0.21 -3.23 16 12 C -0.24 -12.67 9.80 22.73 0.22 -12.45 16 13 C 0.08 4.47 5.56 -21.29 -0.12 4.35 16 14 C -0.51 -28.50 9.05 23.46 0.21 -28.29 16 15 H 0.07 3.93 7.90 -2.91 -0.02 3.91 16 16 C 0.03 1.82 5.15 85.26 0.44 2.26 16 17 N -0.83 -44.66 10.99 21.83 0.24 -44.42 16 18 Si 0.98 39.48 29.59 68.60 2.03 41.51 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 22 C -0.19 -10.14 8.68 22.73 0.20 -9.94 16 23 C -0.10 -4.63 9.67 22.22 0.21 -4.41 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.95 6.58 -2.39 -0.02 0.93 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 1.27 7.41 -2.39 -0.02 1.26 16 28 H 0.06 1.59 7.41 -2.38 -0.02 1.57 16 29 H 0.07 1.19 6.76 -2.39 -0.02 1.17 16 30 H 0.05 0.97 8.02 -2.39 -0.02 0.95 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.34 10.66 8.31 -89.70 -0.75 9.92 16 35 H 0.03 0.95 8.08 -2.38 -0.02 0.94 16 36 H 0.07 2.26 7.32 -2.39 -0.02 2.24 16 37 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 40 H 0.10 5.56 6.23 -2.91 -0.02 5.54 16 41 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -62.31 335.29 2.35 -59.97 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.26 Total: 32.44 kcal Atomic # 6 Polarization: -58.30 SS G_CDS: 4.35 Total: -53.95 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -2.84 Total: -68.69 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.44 Total: -11.27 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -62.31 2.35 -59.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398984854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.778 kcal (2) G-P(sol) polarization free energy of solvation -62.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds