Wall clock time and date at job start Mon Mar 30 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47205 * 2 1 4 4 H 1.09000 * 109.47293 * 54.37397 * 3 2 1 5 5 C 1.53007 * 109.47026 * 294.37990 * 3 2 1 6 6 C 1.53005 * 109.46988 * 175.00109 * 5 3 2 7 7 O 1.42894 * 109.46794 * 179.97438 * 6 5 3 8 8 N 1.46901 * 109.47229 * 174.37748 * 3 2 1 9 9 C 1.46900 * 110.99733 * 273.63183 * 8 3 2 10 10 C 1.50695 * 109.46818 * 176.48230 * 9 8 3 11 11 C 1.38633 * 119.75068 * 269.72303 * 10 9 8 12 12 C 1.37617 * 120.25084 * 179.71749 * 11 10 9 13 13 C 1.40716 * 119.74406 * 0.58114 * 12 11 10 14 14 C 1.41398 * 120.24829 * 179.67558 * 13 12 11 15 15 H 1.08002 * 119.99402 * 27.49888 * 14 13 12 16 16 C 1.39939 * 120.00054 * 207.50302 * 14 13 12 17 17 N 1.30825 * 120.00221 * 14.36258 * 16 14 13 18 18 Si 1.86800 * 119.99744 * 194.35582 * 16 14 13 19 19 H 1.48497 * 109.47047 * 90.00429 * 18 16 14 20 20 H 1.48504 * 109.47100 * 210.00223 * 18 16 14 21 21 H 1.48498 * 109.47463 * 330.00273 * 18 16 14 22 22 C 1.40721 * 119.51197 * 359.69873 * 13 12 11 23 23 C 1.37625 * 119.74286 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47392 * 185.67171 * 1 2 3 25 25 H 1.09006 * 109.46999 * 305.67375 * 1 2 3 26 26 H 1.08999 * 109.47239 * 65.67180 * 1 2 3 27 27 H 1.09006 * 109.46840 * 240.00447 * 2 1 3 28 28 H 1.09000 * 109.47065 * 119.99955 * 2 1 3 29 29 H 1.09003 * 109.46835 * 294.99801 * 5 3 2 30 30 H 1.08993 * 109.47421 * 54.99595 * 5 3 2 31 31 H 1.08993 * 109.46705 * 299.99149 * 6 5 3 32 32 H 1.08996 * 109.47174 * 59.99936 * 6 5 3 33 33 H 0.96700 * 114.00242 * 179.97438 * 7 6 5 34 34 H 1.00892 * 111.00060 * 37.58441 * 8 3 2 35 35 H 1.09004 * 109.46913 * 296.48017 * 9 8 3 36 36 H 1.08993 * 109.47008 * 56.48134 * 9 8 3 37 37 H 1.08005 * 119.87321 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.12978 * 180.27602 * 12 11 10 39 39 H 0.96996 * 119.99629 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.12797 * 179.97438 * 22 13 12 41 41 H 1.07994 * 119.87549 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 0.8353 5 6 1.6486 2.1218 -1.3139 6 6 2.0483 3.5979 -1.2637 7 8 1.6833 4.2322 -2.4910 8 7 3.5028 1.4447 0.1357 9 6 3.9003 1.4034 1.5493 10 6 5.4018 1.3198 1.6465 11 6 6.0210 0.0799 1.6800 12 6 7.3918 -0.0085 1.7628 13 6 8.1646 1.1658 1.8258 14 6 9.5734 1.0874 1.9180 15 1 10.0943 0.2334 1.5108 16 6 10.2924 2.1161 2.5369 17 7 9.6680 3.0010 3.2707 18 14 12.1440 2.2256 2.3153 19 1 12.4517 3.0619 1.1274 20 1 12.7517 2.8391 3.5234 21 1 12.7006 0.8629 2.1189 22 6 7.5249 2.4189 1.7969 23 6 6.1531 2.4833 1.7070 24 1 -0.3634 -1.0226 0.1016 25 1 -0.3633 0.5993 0.8349 26 1 -0.3634 0.4234 -0.9364 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 2.1627 1.6342 -2.1422 30 1 0.5711 2.0418 -1.4575 31 1 1.5341 4.0855 -0.4355 32 1 3.1258 3.6779 -1.1202 33 1 1.9069 5.1721 -2.5298 34 1 3.9147 0.6805 -0.3783 35 1 3.5535 2.3070 2.0508 36 1 3.4561 0.5298 2.0262 37 1 5.4255 -0.8202 1.6369 38 1 7.8724 -0.9754 1.7844 39 1 10.1664 3.7142 3.6993 40 1 8.1083 3.3265 1.8451 41 1 5.6601 3.4439 1.6842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399047007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:48 Heat of formation + Delta-G solvation = -57.155116 kcal Electronic energy + Delta-G solvation = -19330.221880 eV Core-core repulsion = 16401.495821 eV Total energy + Delta-G solvation = -2928.726060 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.39028 -37.39862 -36.25194 -34.02100 -32.53594 -30.71706 -29.62508 -29.18956 -26.51635 -24.61034 -22.86478 -22.44776 -20.97953 -20.46051 -19.77359 -17.28040 -17.20187 -15.72077 -15.47332 -15.24676 -14.57148 -14.38040 -14.30061 -13.85835 -13.56497 -13.25970 -12.82545 -12.52308 -12.41255 -12.08758 -11.93472 -11.74840 -11.50884 -11.37597 -11.17867 -11.09109 -10.94823 -10.87539 -10.62511 -10.41928 -10.30409 -9.81469 -9.58588 -9.34486 -9.17425 -8.02541 -7.44242 -7.27278 -6.72779 -4.35601 2.74726 3.06696 3.08356 3.11326 3.18041 3.94488 4.22497 4.44983 4.75684 4.87761 4.96100 5.19540 5.26159 5.42648 5.51289 5.59576 5.67910 5.70841 5.80665 5.83626 5.89604 5.93401 6.04010 6.17405 6.24649 6.26916 6.29209 6.36071 6.45798 6.95683 7.09200 7.29071 7.35891 7.41584 7.62188 7.67342 7.72300 7.89247 8.06765 8.13951 8.31148 8.65644 8.90792 8.98171 10.22220 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027889 B = 0.003793 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.751004 B = 7380.627155 C = 8026.231794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.153 4.153 3 C 0.086 3.914 4 H 0.074 0.926 5 C -0.104 4.104 6 C 0.079 3.921 7 O -0.584 6.584 8 N -0.680 5.680 9 C 0.124 3.876 10 C -0.211 4.211 11 C -0.087 4.087 12 C -0.224 4.224 13 C 0.113 3.887 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.798 5.798 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.163 4.163 23 C -0.081 4.081 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.376 0.624 34 H 0.341 0.659 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.279 0.721 40 H 0.116 0.884 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 -0.102 -4.737 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C -0.025 4.025 4 H 0.092 0.908 5 C -0.142 4.142 6 C 0.002 3.998 7 O -0.389 6.389 8 N -0.310 5.310 9 C -0.003 4.003 10 C -0.213 4.213 11 C -0.106 4.106 12 C -0.244 4.244 13 C 0.110 3.890 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.424 5.424 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.182 4.182 23 C -0.100 4.100 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.222 0.778 34 H 0.160 0.840 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.587 0.187 -4.742 13.452 hybrid contribution 0.886 -0.310 0.481 1.055 sum -11.701 -0.124 -4.261 12.453 Atomic orbital electron populations 1.21770 0.95697 1.01393 1.01861 1.22237 0.96545 0.98172 1.02233 1.21586 0.89397 0.94182 0.97297 0.90790 1.21504 1.00717 0.94189 0.97806 1.22163 1.00039 0.92975 0.84660 1.86415 1.85865 1.27463 1.39147 1.60794 1.06111 1.51504 1.12581 1.20583 0.93616 0.98762 0.87377 1.18926 0.92538 0.93443 1.16391 1.20360 0.94505 0.94951 1.00776 1.20965 0.92952 0.97193 1.13293 1.17633 0.93167 0.90906 0.87260 1.19594 0.91831 1.04785 1.33320 0.90557 1.25883 1.01034 0.94402 0.92864 1.69811 1.38277 1.12266 1.22069 0.86305 0.82199 0.79548 0.78595 1.19317 1.20355 1.18693 1.21318 0.92853 0.98338 1.05686 1.20500 0.94203 0.95556 0.99708 0.93029 0.92796 0.92441 0.91740 0.91851 0.91404 0.91573 0.94615 0.91707 0.77779 0.83995 0.92101 0.96258 0.89936 0.89153 0.90970 0.86586 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.54 37.16 0.35 -1.03 16 2 C -0.15 -1.66 5.38 -26.73 -0.14 -1.81 16 3 C 0.09 1.05 2.05 -67.71 -0.14 0.91 16 4 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 5 C -0.10 -1.25 5.13 -26.73 -0.14 -1.39 16 6 C 0.08 0.98 6.94 37.16 0.26 1.24 16 7 O -0.58 -7.19 13.66 -35.23 -0.48 -7.67 16 8 N -0.68 -10.17 5.72 -107.99 -0.62 -10.78 16 9 C 0.12 2.10 5.59 -4.98 -0.03 2.08 16 10 C -0.21 -4.47 5.38 -104.33 -0.56 -5.03 16 11 C -0.09 -1.91 9.67 -39.66 -0.38 -2.29 16 12 C -0.22 -5.49 9.80 -38.87 -0.38 -5.87 16 13 C 0.11 3.01 5.55 -106.82 -0.59 2.42 16 14 C -0.47 -12.41 9.06 -37.74 -0.34 -12.76 16 15 H 0.08 1.96 7.89 -52.49 -0.41 1.55 16 16 C 0.08 1.90 5.19 -17.34 -0.09 1.81 16 17 N -0.80 -20.75 10.96 55.55 0.61 -20.14 16 18 Si 0.91 18.79 29.58 -169.99 -5.03 13.76 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.16 -4.22 8.67 -38.87 -0.34 -4.55 16 23 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.51 6.75 -51.93 -0.35 0.16 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.74 7.40 -51.93 -0.38 0.35 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.74 6.49 -51.93 -0.34 0.40 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 33 H 0.38 2.99 9.12 45.56 0.42 3.41 16 34 H 0.34 5.24 8.40 -39.30 -0.33 4.91 16 35 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 36 H 0.02 0.31 7.33 -51.93 -0.38 -0.07 16 37 H 0.08 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.12 3.13 6.26 -52.49 -0.33 2.80 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -27.89 335.31 -9.23 -37.12 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.85 Total: 11.20 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -2.91 Total: -28.52 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: -0.01 Total: -30.93 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.48 Total: -7.67 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.89 -9.23 -37.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399047007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.039 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds