Wall clock time and date at job start Mon Mar 30 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47205 * 2 1 4 4 H 1.09000 * 109.47293 * 54.37397 * 3 2 1 5 5 C 1.53007 * 109.47026 * 294.37990 * 3 2 1 6 6 C 1.53005 * 109.46988 * 175.00109 * 5 3 2 7 7 O 1.42894 * 109.46794 * 179.97438 * 6 5 3 8 8 N 1.46901 * 109.47229 * 174.37748 * 3 2 1 9 9 C 1.46900 * 110.99733 * 273.63183 * 8 3 2 10 10 C 1.50695 * 109.46818 * 176.48230 * 9 8 3 11 11 C 1.38633 * 119.75068 * 269.72303 * 10 9 8 12 12 C 1.37617 * 120.25084 * 179.71749 * 11 10 9 13 13 C 1.40716 * 119.74406 * 0.58114 * 12 11 10 14 14 C 1.41398 * 120.24829 * 179.67558 * 13 12 11 15 15 H 1.08002 * 119.99402 * 27.49888 * 14 13 12 16 16 C 1.39939 * 120.00054 * 207.50302 * 14 13 12 17 17 N 1.30825 * 120.00221 * 14.36258 * 16 14 13 18 18 Si 1.86800 * 119.99744 * 194.35582 * 16 14 13 19 19 H 1.48497 * 109.47047 * 90.00429 * 18 16 14 20 20 H 1.48504 * 109.47100 * 210.00223 * 18 16 14 21 21 H 1.48498 * 109.47463 * 330.00273 * 18 16 14 22 22 C 1.40721 * 119.51197 * 359.69873 * 13 12 11 23 23 C 1.37625 * 119.74286 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47392 * 185.67171 * 1 2 3 25 25 H 1.09006 * 109.46999 * 305.67375 * 1 2 3 26 26 H 1.08999 * 109.47239 * 65.67180 * 1 2 3 27 27 H 1.09006 * 109.46840 * 240.00447 * 2 1 3 28 28 H 1.09000 * 109.47065 * 119.99955 * 2 1 3 29 29 H 1.09003 * 109.46835 * 294.99801 * 5 3 2 30 30 H 1.08993 * 109.47421 * 54.99595 * 5 3 2 31 31 H 1.08993 * 109.46705 * 299.99149 * 6 5 3 32 32 H 1.08996 * 109.47174 * 59.99936 * 6 5 3 33 33 H 0.96700 * 114.00242 * 179.97438 * 7 6 5 34 34 H 1.00892 * 111.00060 * 37.58441 * 8 3 2 35 35 H 1.09004 * 109.46913 * 296.48017 * 9 8 3 36 36 H 1.08993 * 109.47008 * 56.48134 * 9 8 3 37 37 H 1.08005 * 119.87321 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.12978 * 180.27602 * 12 11 10 39 39 H 0.96996 * 119.99629 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.12797 * 179.97438 * 22 13 12 41 41 H 1.07994 * 119.87549 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 0.8353 5 6 1.6486 2.1218 -1.3139 6 6 2.0483 3.5979 -1.2637 7 8 1.6833 4.2322 -2.4910 8 7 3.5028 1.4447 0.1357 9 6 3.9003 1.4034 1.5493 10 6 5.4018 1.3198 1.6465 11 6 6.0210 0.0799 1.6800 12 6 7.3918 -0.0085 1.7628 13 6 8.1646 1.1658 1.8258 14 6 9.5734 1.0874 1.9180 15 1 10.0943 0.2334 1.5108 16 6 10.2924 2.1161 2.5369 17 7 9.6680 3.0010 3.2707 18 14 12.1440 2.2256 2.3153 19 1 12.4517 3.0619 1.1274 20 1 12.7517 2.8391 3.5234 21 1 12.7006 0.8629 2.1189 22 6 7.5249 2.4189 1.7969 23 6 6.1531 2.4833 1.7070 24 1 -0.3634 -1.0226 0.1016 25 1 -0.3633 0.5993 0.8349 26 1 -0.3634 0.4234 -0.9364 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 2.1627 1.6342 -2.1422 30 1 0.5711 2.0418 -1.4575 31 1 1.5341 4.0855 -0.4355 32 1 3.1258 3.6779 -1.1202 33 1 1.9069 5.1721 -2.5298 34 1 3.9147 0.6805 -0.3783 35 1 3.5535 2.3070 2.0508 36 1 3.4561 0.5298 2.0262 37 1 5.4255 -0.8202 1.6369 38 1 7.8724 -0.9754 1.7844 39 1 10.1664 3.7142 3.6993 40 1 8.1083 3.3265 1.8451 41 1 5.6601 3.4439 1.6842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399047007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:48 Heat of formation + Delta-G solvation = -74.780254 kcal Electronic energy + Delta-G solvation = -19330.986164 eV Core-core repulsion = 16401.495821 eV Total energy + Delta-G solvation = -2929.490343 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.78401 -38.82798 -37.28694 -35.74016 -33.91439 -31.79874 -31.26119 -30.92607 -28.08482 -25.86623 -24.31867 -23.35369 -22.83657 -21.76262 -21.22264 -19.19659 -18.15726 -17.18328 -16.77191 -16.59914 -15.79290 -15.72380 -15.52656 -15.38317 -14.96174 -14.63784 -14.18499 -13.82799 -13.71143 -13.54691 -13.35639 -13.17019 -12.95650 -12.72469 -12.55537 -12.36535 -12.19097 -12.11901 -11.94997 -11.78043 -11.52341 -11.36666 -11.17686 -11.03412 -10.76727 -9.32845 -9.29203 -9.05724 -8.60036 -6.33401 0.96376 1.16536 1.37914 1.50480 1.51658 2.21724 2.72767 3.35453 3.40679 3.82009 3.98835 4.09255 4.26952 4.32508 4.36644 4.42960 4.50938 4.58134 4.62124 4.67643 4.73679 4.80949 4.90160 4.98934 5.08293 5.13017 5.18125 5.20959 5.24470 5.31569 5.39989 5.44362 5.48211 5.73762 5.95975 6.12357 6.21039 6.31604 6.41755 6.56425 6.73374 6.92543 6.96574 7.05924 8.37273 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027889 B = 0.003793 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.751004 B = 7380.627155 C = 8026.231794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C 0.091 3.909 4 H 0.079 0.921 5 C -0.100 4.100 6 C 0.081 3.919 7 O -0.598 6.598 8 N -0.686 5.686 9 C 0.133 3.867 10 C -0.196 4.196 11 C -0.087 4.087 12 C -0.240 4.240 13 C 0.079 3.921 14 C -0.506 4.506 15 H 0.072 0.928 16 C 0.034 3.966 17 N -0.832 5.832 18 Si 0.982 3.018 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.186 4.186 23 C -0.087 4.087 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.393 0.607 34 H 0.340 0.660 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.286 0.714 40 H 0.096 0.904 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 -0.427 -5.029 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C -0.018 4.018 4 H 0.097 0.903 5 C -0.138 4.138 6 C 0.003 3.997 7 O -0.406 6.406 8 N -0.316 5.316 9 C 0.005 3.995 10 C -0.197 4.197 11 C -0.105 4.105 12 C -0.260 4.260 13 C 0.077 3.923 14 C -0.536 4.536 15 H 0.090 0.910 16 C -0.180 4.180 17 N -0.459 5.459 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.206 4.206 23 C -0.106 4.106 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.242 0.758 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.183 -0.131 -5.040 15.053 hybrid contribution 1.183 -0.209 0.528 1.313 sum -13.000 -0.340 -4.512 13.765 Atomic orbital electron populations 1.21748 0.94290 1.02113 1.02290 1.22175 0.97741 0.96887 1.01967 1.21591 0.87428 0.95267 0.97553 0.90327 1.21473 1.01336 0.93794 0.97204 1.22111 0.98922 0.93492 0.85157 1.86373 1.85896 1.29161 1.39148 1.60690 1.08186 1.51656 1.11103 1.20463 0.90378 0.99792 0.88854 1.19378 0.94988 0.92375 1.12968 1.20695 0.93765 0.96608 0.99453 1.21183 0.94280 0.96786 1.13742 1.17969 0.93885 0.91920 0.88570 1.19831 0.92532 1.05957 1.35257 0.90952 1.26718 1.05807 0.93569 0.91907 1.69870 1.40244 1.12961 1.22796 0.85204 0.76030 0.79614 0.78835 1.18768 1.19240 1.18307 1.21268 0.94085 0.97534 1.07708 1.20740 0.93376 0.97234 0.99253 0.92230 0.92370 0.92013 0.91779 0.92357 0.92484 0.90264 0.93479 0.93689 0.75756 0.84199 0.91522 0.94741 0.86706 0.88757 0.90336 0.88609 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.54 71.98 0.69 -1.58 16 2 C -0.15 -2.82 5.38 30.60 0.16 -2.65 16 3 C 0.09 1.99 2.05 44.92 0.09 2.08 16 4 H 0.08 1.68 7.82 -2.39 -0.02 1.66 16 5 C -0.10 -2.18 5.13 30.60 0.16 -2.03 16 6 C 0.08 1.86 6.94 71.98 0.50 2.36 16 7 O -0.60 -13.69 13.66 -148.98 -2.03 -15.72 16 8 N -0.69 -19.01 5.72 -495.57 -2.83 -21.85 16 9 C 0.13 4.16 5.59 85.56 0.48 4.64 16 10 C -0.20 -7.99 5.38 -19.68 -0.11 -8.10 16 11 C -0.09 -3.68 9.67 22.22 0.21 -3.47 16 12 C -0.24 -11.88 9.80 22.73 0.22 -11.66 16 13 C 0.08 4.34 5.55 -21.29 -0.12 4.22 16 14 C -0.51 -28.03 9.06 23.46 0.21 -27.81 16 15 H 0.07 3.88 7.89 -2.91 -0.02 3.86 16 16 C 0.03 1.74 5.19 85.25 0.44 2.19 16 17 N -0.83 -44.61 10.96 21.82 0.24 -44.37 16 18 Si 0.98 39.18 29.58 68.60 2.03 41.21 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C -0.19 -9.99 8.67 22.73 0.20 -9.79 16 23 C -0.09 -4.04 9.67 22.22 0.21 -3.82 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.06 0.91 6.75 -2.39 -0.02 0.89 16 27 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.06 1.18 7.40 -2.39 -0.02 1.16 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.54 6.49 -2.39 -0.02 1.53 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 1.21 7.75 -2.39 -0.02 1.19 16 33 H 0.39 5.61 9.12 -74.06 -0.68 4.94 16 34 H 0.34 9.73 8.40 -89.70 -0.75 8.97 16 35 H 0.07 2.04 8.06 -2.38 -0.02 2.02 16 36 H 0.03 0.99 7.33 -2.39 -0.02 0.98 16 37 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 39 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 40 H 0.10 5.43 6.26 -2.91 -0.02 5.41 16 41 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -61.06 335.31 0.35 -60.72 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.41 Total: 35.44 kcal Atomic # 6 Polarization: -58.78 SS G_CDS: 3.36 Total: -55.42 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -2.60 Total: -66.22 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -2.03 Total: -15.72 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -61.06 0.35 -60.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399047007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.064 kcal (2) G-P(sol) polarization free energy of solvation -61.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds