Wall clock time and date at job start Mon Mar 30 2020 07:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47642 * 2 1 4 4 N 1.46900 * 109.47496 * 179.97438 * 3 2 1 5 5 C 1.46902 * 111.00280 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47172 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47052 * 65.00093 * 6 5 4 8 8 C 1.42902 * 114.00031 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47264 * 179.97438 * 8 7 6 10 10 C 1.38632 * 119.75213 * 269.72235 * 9 8 7 11 11 C 1.37614 * 120.25123 * 179.71891 * 10 9 8 12 12 C 1.40719 * 119.74124 * 0.57305 * 11 10 9 13 13 C 1.41395 * 120.24246 * 179.67718 * 12 11 10 14 14 H 1.07998 * 119.99970 * 155.30784 * 13 12 11 15 15 C 1.39951 * 120.00207 * 335.31835 * 13 12 11 16 16 N 1.30818 * 119.99753 * 342.22830 * 15 13 12 17 17 Si 1.86797 * 120.00021 * 162.22875 * 15 13 12 18 18 H 1.48500 * 109.47048 * 94.66426 * 17 15 13 19 19 H 1.48498 * 109.47252 * 214.66382 * 17 15 13 20 20 H 1.48496 * 109.47461 * 334.66371 * 17 15 13 21 21 C 1.40704 * 119.51466 * 359.70404 * 12 11 10 22 22 C 1.37620 * 119.74516 * 359.97438 * 21 12 11 23 23 H 1.08992 * 109.47598 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46915 * 300.00127 * 1 2 3 25 25 H 1.09005 * 109.47254 * 59.99080 * 1 2 3 26 26 H 1.09003 * 109.46915 * 239.99873 * 2 1 3 27 27 H 1.08997 * 109.47264 * 120.00633 * 2 1 3 28 28 H 1.09003 * 109.47069 * 59.99967 * 3 2 1 29 29 H 1.09005 * 109.47547 * 300.00741 * 3 2 1 30 30 H 1.00895 * 111.00245 * 303.95945 * 4 3 2 31 31 H 1.08995 * 109.46805 * 60.00189 * 5 4 3 32 32 H 1.09001 * 109.46876 * 300.00364 * 5 4 3 33 33 H 1.09002 * 109.47121 * 305.00225 * 6 5 4 34 34 H 1.08991 * 109.47294 * 184.99925 * 6 5 4 35 35 H 1.08998 * 109.47199 * 59.99761 * 8 7 6 36 36 H 1.09001 * 109.47096 * 299.99734 * 8 7 6 37 37 H 1.08005 * 119.87401 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.13194 * 180.28480 * 11 10 9 39 39 H 0.97004 * 119.99893 * 180.02562 * 16 15 13 40 40 H 1.08007 * 120.13445 * 179.97438 * 21 12 11 41 41 H 1.08000 * 119.87742 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4423 0.0006 5 6 4.0357 2.8137 0.0013 6 6 5.5651 2.7728 0.0012 7 8 6.0260 2.1915 -1.2201 8 6 7.4488 2.1052 -1.3222 9 6 7.8207 1.4798 -2.6418 10 6 7.9666 0.1043 -2.7344 11 6 8.3004 -0.4782 -3.9357 12 6 8.5056 0.3292 -5.0699 13 6 8.8555 -0.2575 -6.3078 14 1 8.6316 0.2558 -7.2312 15 6 9.4919 -1.5036 -6.3366 16 7 10.0722 -1.9668 -5.2595 17 14 9.5129 -2.5055 -7.9131 18 1 10.7705 -2.2348 -8.6549 19 1 9.4349 -3.9510 -7.5820 20 1 8.3500 -2.1272 -8.7555 21 6 8.3605 1.7246 -4.9628 22 6 8.0196 2.2848 -3.7529 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.8704 0.9163 0.7821 31 1 3.6858 3.3367 0.8912 32 1 3.6865 3.3373 -0.8887 33 1 5.9125 2.1734 0.8428 34 1 5.9557 3.7863 0.0912 35 1 7.8349 1.4918 -0.5081 36 1 7.8788 3.1048 -1.2594 37 1 7.8136 -0.5129 -1.8614 38 1 8.4090 -1.5503 -4.0068 39 1 10.5136 -2.8303 -5.2795 40 1 8.5161 2.3538 -5.8268 41 1 7.9073 3.3556 -3.6684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399050245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:00 Heat of formation + Delta-G solvation = -63.015282 kcal Electronic energy + Delta-G solvation = -18869.773295 eV Core-core repulsion = 15940.793119 eV Total energy + Delta-G solvation = -2928.980176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.73437 -38.70541 -37.38004 -35.61951 -34.03377 -32.32355 -31.16581 -29.88766 -28.25414 -25.65732 -25.11192 -22.90959 -22.88275 -22.11071 -21.74705 -19.22672 -17.72929 -17.29019 -16.86108 -16.73255 -16.33367 -15.74964 -15.67383 -15.41154 -14.87569 -14.59856 -14.40519 -13.96600 -13.80233 -13.57992 -13.25568 -13.12745 -12.99126 -12.80561 -12.72371 -12.43875 -12.29169 -12.11036 -11.97146 -11.66916 -11.59005 -11.38530 -11.26819 -10.99599 -10.36774 -9.37148 -9.29242 -9.23101 -8.64689 -6.34577 0.90295 1.15528 1.38378 1.48214 1.54867 2.21314 2.63724 3.13346 3.24850 3.79763 4.03034 4.15172 4.19419 4.26925 4.34391 4.37572 4.46746 4.55463 4.56801 4.63091 4.65306 4.67078 4.74401 4.82290 4.90210 4.99087 5.04516 5.16012 5.19116 5.31096 5.36927 5.39926 5.46380 5.70852 5.94867 6.10016 6.11615 6.23949 6.37830 6.46900 6.59277 6.69643 6.93340 7.03291 8.32904 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.003648 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.181184 B = 7674.123374 C = 8639.361033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.062 3.938 4 N -0.705 5.705 5 C 0.066 3.934 6 C 0.056 3.944 7 O -0.395 6.395 8 C 0.133 3.867 9 C -0.216 4.216 10 C -0.086 4.086 11 C -0.193 4.193 12 C 0.082 3.918 13 C -0.501 4.501 14 H 0.076 0.924 15 C 0.035 3.965 16 N -0.824 5.824 17 Si 0.984 3.016 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.248 4.248 22 C -0.074 4.074 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.343 0.657 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.289 0.711 40 H 0.099 0.901 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.679 4.976 11.780 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.066 4.066 4 N -0.337 5.337 5 C -0.063 4.063 6 C -0.021 4.021 7 O -0.315 6.315 8 C 0.057 3.943 9 C -0.217 4.217 10 C -0.105 4.105 11 C -0.212 4.212 12 C 0.080 3.920 13 C -0.530 4.530 14 H 0.094 0.906 15 C -0.180 4.180 16 N -0.449 5.449 17 Si 0.804 3.196 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.183 1.183 21 C -0.267 4.267 22 C -0.092 4.092 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.604 4.667 11.055 16.693 hybrid contribution 0.319 -0.217 0.310 0.495 sum -11.285 4.450 11.365 16.623 Atomic orbital electron populations 1.21701 0.94331 1.02259 1.02151 1.21489 0.96586 0.95995 1.02006 1.21985 0.86852 0.97387 1.00423 1.60311 1.08061 1.14486 1.50860 1.21950 0.92914 0.89981 1.01423 1.22677 0.94656 0.97722 0.87062 1.88128 1.21564 1.83001 1.38786 1.20975 0.81127 0.98432 0.93775 1.19255 1.13351 0.93313 0.95767 1.20775 0.98599 0.94510 0.96597 1.21252 1.07186 0.99128 0.93655 1.18006 0.88391 0.91852 0.93739 1.19861 1.35569 1.03842 0.93734 0.90616 1.26803 0.91731 0.97969 1.01540 1.69880 1.24469 1.18937 1.31659 0.85175 0.79774 0.77341 0.77298 1.18506 1.18910 1.18348 1.21181 1.13501 0.94448 0.97581 1.20710 0.97718 0.98447 0.92353 0.92059 0.91835 0.92769 0.93036 0.91675 0.94111 0.92053 0.83821 0.91492 0.91547 0.92846 0.91647 0.93253 0.92543 0.87904 0.88147 0.90052 0.88302 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 71.98 0.71 -1.47 16 2 C -0.12 -2.32 6.19 30.59 0.19 -2.13 16 3 C 0.06 1.24 5.68 86.30 0.49 1.73 16 4 N -0.70 -16.89 6.45 -513.90 -3.31 -20.20 16 5 C 0.07 1.45 6.07 86.30 0.52 1.97 16 6 C 0.06 1.36 6.22 71.98 0.45 1.81 16 7 O -0.39 -14.05 10.27 -148.98 -1.53 -15.58 16 8 C 0.13 4.74 6.05 71.24 0.43 5.17 16 9 C -0.22 -9.83 5.53 -19.67 -0.11 -9.93 16 10 C -0.09 -4.29 9.67 22.22 0.21 -4.08 16 11 C -0.19 -10.75 8.70 22.73 0.20 -10.55 16 12 C 0.08 4.70 5.57 -21.29 -0.12 4.58 16 13 C -0.50 -28.16 9.05 23.46 0.21 -27.95 16 14 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 15 C 0.03 1.80 5.14 85.26 0.44 2.24 16 16 N -0.82 -44.31 10.97 21.83 0.24 -44.07 16 17 Si 0.98 39.19 29.59 68.60 2.03 41.22 16 18 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 21 C -0.25 -12.88 9.80 22.73 0.22 -12.65 16 22 C -0.07 -3.45 9.67 22.22 0.21 -3.24 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.34 7.33 8.73 -89.70 -0.78 6.55 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 36 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 37 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.10 5.82 6.18 -2.91 -0.02 5.80 16 39 H 0.29 13.94 8.30 -92.71 -0.77 13.18 16 40 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 41 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -64.04 342.86 1.70 -62.34 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.20 Total: 30.79 kcal Atomic # 6 Polarization: -58.57 SS G_CDS: 4.07 Total: -54.50 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -3.08 Total: -64.27 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.53 Total: -15.58 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -64.04 1.70 -62.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399050245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.674 kcal (2) G-P(sol) polarization free energy of solvation -64.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds