Wall clock time and date at job start Mon Mar 30 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47008 * 2 1 4 4 H 1.09000 * 109.47280 * 55.00671 * 3 2 1 5 5 C 1.53003 * 109.46756 * 175.00053 * 3 2 1 6 6 N 1.46906 * 109.47014 * 178.99901 * 5 3 2 7 7 C 1.46903 * 110.99780 * 175.74973 * 6 5 3 8 8 C 1.50700 * 109.46844 * 179.97438 * 7 6 5 9 9 C 1.38635 * 119.74794 * 269.72779 * 8 7 6 10 10 C 1.37624 * 120.24378 * 179.71950 * 9 8 7 11 11 C 1.40716 * 119.74776 * 0.57164 * 10 9 8 12 12 C 1.41395 * 120.24679 * 179.67974 * 11 10 9 13 13 H 1.07998 * 120.00006 * 157.84588 * 12 11 10 14 14 C 1.39947 * 119.99734 * 337.84346 * 12 11 10 15 15 N 1.30823 * 119.99909 * 336.91654 * 14 12 11 16 16 Si 1.86794 * 119.99788 * 156.91616 * 14 12 11 17 17 H 1.48497 * 109.47385 * 94.94154 * 16 14 12 18 18 H 1.48504 * 109.47389 * 214.94483 * 16 14 12 19 19 H 1.48502 * 109.47328 * 334.94273 * 16 14 12 20 20 C 1.40715 * 119.50825 * 359.70106 * 11 10 9 21 21 C 1.37620 * 119.74704 * 0.02562 * 20 11 10 22 22 O 1.42891 * 109.47312 * 294.99754 * 3 2 1 23 23 C 1.42905 * 114.00048 * 115.86481 * 22 3 2 24 24 H 1.09000 * 109.46605 * 300.00062 * 1 2 3 25 25 H 1.08994 * 109.47076 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46655 * 59.99926 * 1 2 3 27 27 H 1.09004 * 109.47101 * 120.00319 * 2 1 3 28 28 H 1.08999 * 109.46832 * 240.00430 * 2 1 3 29 29 H 1.09004 * 109.47098 * 298.99682 * 5 3 2 30 30 H 1.09003 * 109.47469 * 58.99793 * 5 3 2 31 31 H 1.00899 * 110.99681 * 299.70292 * 6 5 3 32 32 H 1.08997 * 109.47005 * 299.99345 * 7 6 5 33 33 H 1.08996 * 109.47185 * 59.99919 * 7 6 5 34 34 H 1.07991 * 119.87732 * 359.97438 * 9 8 7 35 35 H 1.08001 * 120.12512 * 180.27233 * 10 9 8 36 36 H 0.97010 * 119.99638 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.12626 * 179.97438 * 20 11 10 38 38 H 1.08003 * 119.87113 * 180.02562 * 21 20 11 39 39 H 1.08995 * 109.47461 * 184.09652 * 23 22 3 40 40 H 1.09006 * 109.47021 * 304.10211 * 23 22 3 41 41 H 1.09001 * 109.46793 * 64.09296 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 7 4.0566 2.8284 0.1016 7 6 5.5084 2.8752 0.3213 8 6 5.9753 4.3077 0.2893 9 6 6.3761 4.8738 -0.9110 10 6 6.7989 6.1829 -0.9530 11 6 6.8348 6.9433 0.2304 12 6 7.2737 8.2870 0.2006 13 1 6.9791 8.9689 0.9846 14 6 8.0900 8.7334 -0.8449 15 7 8.8095 7.8776 -1.5241 16 14 8.1520 10.5512 -1.2705 17 1 9.3012 11.1836 -0.5744 18 1 8.3135 10.7108 -2.7381 19 1 6.8907 11.2044 -0.8374 20 6 6.4310 6.3564 1.4439 21 6 6.0065 5.0474 1.4614 22 8 1.6621 2.0814 -1.2210 23 6 0.7591 3.1756 -1.0492 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.8525 0.9728 1.0655 30 1 3.9988 0.8900 -0.7066 31 1 3.8066 3.2859 -0.7623 32 1 5.7432 2.4378 1.2916 33 1 6.0129 2.3113 -0.4632 34 1 6.3526 4.2868 -1.8171 35 1 7.1066 6.6233 -1.8899 36 1 9.3750 8.1870 -2.2491 37 1 6.4549 6.9307 2.3582 38 1 5.6957 4.5950 2.3916 39 1 0.4642 3.5601 -2.0255 40 1 -0.1253 2.8357 -0.5102 41 1 1.2498 3.9656 -0.4806 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399130882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:33 Heat of formation + Delta-G solvation = -47.527823 kcal Electronic energy + Delta-G solvation = -19273.254438 eV Core-core repulsion = 16344.945849 eV Total energy + Delta-G solvation = -2928.308589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.71812 -37.63559 -35.30607 -33.76044 -33.20790 -30.49220 -29.22997 -28.42702 -26.53077 -25.55242 -23.36990 -22.11353 -21.09155 -20.92981 -19.76899 -17.27163 -16.90668 -15.99304 -15.41460 -15.19520 -14.58685 -14.28888 -13.98914 -13.97350 -13.66140 -13.38484 -13.26227 -12.56641 -12.41171 -12.13721 -11.90398 -11.77227 -11.58987 -11.40222 -11.31214 -11.15060 -10.98070 -10.90161 -10.70481 -10.50845 -10.37256 -9.62420 -9.39740 -9.35968 -9.04315 -8.00341 -7.41127 -7.29492 -6.79814 -4.30927 2.76335 3.07108 3.10546 3.12810 3.21671 3.81577 3.93258 4.38990 4.66778 4.91534 5.00190 5.11814 5.24737 5.32091 5.48873 5.53817 5.62965 5.70742 5.75724 5.77370 5.79233 5.91793 5.93229 5.94461 6.04326 6.15025 6.34622 6.43374 6.45527 6.97929 7.08416 7.25218 7.30824 7.40738 7.45747 7.64512 7.82377 7.94075 8.07955 8.19128 8.33076 8.66072 8.91484 9.01346 10.15515 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034686 B = 0.003484 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.058764 B = 8035.880178 C = 8338.058460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.091 3.909 4 H 0.070 0.930 5 C 0.049 3.951 6 N -0.684 5.684 7 C 0.125 3.875 8 C -0.217 4.217 9 C -0.092 4.092 10 C -0.172 4.172 11 C 0.114 3.886 12 C -0.465 4.465 13 H 0.078 0.922 14 C 0.079 3.921 15 N -0.786 5.786 16 Si 0.903 3.097 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.232 4.232 21 C -0.067 4.067 22 O -0.384 6.384 23 C 0.032 3.968 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.345 0.655 32 H 0.060 0.940 33 H 0.018 0.982 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.281 0.719 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 -10.312 0.618 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.033 3.967 4 H 0.088 0.912 5 C -0.081 4.081 6 N -0.316 5.316 7 C -0.003 4.003 8 C -0.219 4.219 9 C -0.111 4.111 10 C -0.191 4.191 11 C 0.111 3.889 12 C -0.494 4.494 13 H 0.096 0.904 14 C -0.139 4.139 15 N -0.410 5.410 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.251 4.251 21 C -0.085 4.085 22 O -0.303 6.303 23 C -0.065 4.065 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.164 0.836 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.226 -10.284 0.914 15.252 hybrid contribution 0.396 0.578 -0.872 1.118 sum -10.830 -9.706 0.043 14.543 Atomic orbital electron populations 1.21738 0.95671 1.01508 1.01862 1.21857 0.96379 0.96545 1.02556 1.22249 0.94402 0.92699 0.87352 0.91202 1.22233 0.93778 0.91544 1.00534 1.60621 1.14528 1.14093 1.42362 1.20538 0.85826 0.94974 0.98941 1.18873 1.13654 0.95033 0.94292 1.20509 0.99792 0.95554 0.95207 1.21198 1.05538 0.93795 0.98566 1.17601 0.88096 0.92614 0.90593 1.19583 1.26595 0.95744 1.07438 0.90415 1.25922 0.93165 0.99970 0.94878 1.69871 1.17425 1.36867 1.16883 0.86395 0.79723 0.82807 0.78390 1.19584 1.20011 1.18330 1.20933 1.12267 0.95122 0.96821 1.20319 0.98374 0.94199 0.95645 1.87850 1.64915 1.47185 1.30315 1.22832 0.92182 0.89294 1.02154 0.93012 0.92811 0.92313 0.91036 0.91282 0.90614 0.95188 0.83620 0.92197 0.96360 0.89955 0.86918 0.90858 0.89177 0.89562 0.90136 0.94530 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.74 37.16 0.36 -0.94 16 2 C -0.14 -1.31 5.64 -26.73 -0.15 -1.46 16 3 C 0.09 1.09 2.52 -26.73 -0.07 1.02 16 4 H 0.07 0.84 7.61 -51.93 -0.40 0.44 16 5 C 0.05 0.66 5.42 -3.82 -0.02 0.64 16 6 N -0.68 -11.30 6.46 -115.05 -0.74 -12.04 16 7 C 0.12 2.27 5.80 -4.97 -0.03 2.25 16 8 C -0.22 -4.80 5.41 -104.33 -0.56 -5.36 16 9 C -0.09 -2.17 9.67 -39.66 -0.38 -2.55 16 10 C -0.17 -4.52 8.73 -38.87 -0.34 -4.86 16 11 C 0.11 3.07 5.59 -106.82 -0.60 2.48 16 12 C -0.46 -12.48 9.03 -37.74 -0.34 -12.82 16 13 H 0.08 2.01 7.94 -52.49 -0.42 1.59 16 14 C 0.08 2.01 5.04 -17.34 -0.09 1.92 16 15 N -0.79 -20.45 11.14 55.55 0.62 -19.83 16 16 Si 0.90 18.67 29.62 -169.99 -5.03 13.64 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 20 C -0.23 -5.82 9.80 -38.87 -0.38 -6.20 16 21 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 22 O -0.38 -5.05 9.26 -35.23 -0.33 -5.38 16 23 C 0.03 0.36 10.67 101.05 1.08 1.43 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.54 7.66 -51.93 -0.40 0.15 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.35 6.02 8.19 -39.29 -0.32 5.70 16 32 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.11 3.06 6.19 -52.49 -0.33 2.73 16 36 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.04 0.35 7.94 -51.93 -0.41 -0.07 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -27.59 339.80 -9.16 -36.75 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.89 Total: 8.09 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -1.90 Total: -26.36 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: -0.12 Total: -31.87 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.33 Total: -5.38 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.59 -9.16 -36.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399130882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.776 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds