Wall clock time and date at job start Mon Mar 30 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47100 * 2 1 4 4 H 1.09002 * 109.47233 * 305.20160 * 3 2 1 5 5 C 1.53006 * 109.47057 * 185.19884 * 3 2 1 6 6 N 1.46893 * 109.47084 * 179.97438 * 5 3 2 7 7 C 1.46904 * 111.00096 * 180.02562 * 6 5 3 8 8 C 1.50694 * 109.47417 * 180.02562 * 7 6 5 9 9 C 1.38635 * 119.74677 * 269.73142 * 8 7 6 10 10 C 1.37621 * 120.24767 * 179.72155 * 9 8 7 11 11 C 1.40721 * 119.74073 * 0.56431 * 10 9 8 12 12 C 1.41394 * 120.24128 * 179.68132 * 11 10 9 13 13 H 1.08002 * 120.00223 * 206.60988 * 12 11 10 14 14 C 1.39951 * 120.00171 * 26.60923 * 12 11 10 15 15 N 1.30820 * 119.99802 * 15.66373 * 14 12 11 16 16 Si 1.86793 * 119.99934 * 195.66039 * 14 12 11 17 17 H 1.48497 * 109.47283 * 90.00195 * 16 14 12 18 18 H 1.48504 * 109.46969 * 210.00080 * 16 14 12 19 19 H 1.48500 * 109.47621 * 329.99725 * 16 14 12 20 20 C 1.40716 * 119.51574 * 359.71010 * 11 10 9 21 21 C 1.37620 * 119.74204 * 359.97438 * 20 11 10 22 22 O 1.42897 * 109.47014 * 65.20380 * 3 2 1 23 23 C 1.42903 * 113.99642 * 259.12402 * 22 3 2 24 24 H 1.08994 * 109.47459 * 176.85761 * 1 2 3 25 25 H 1.09002 * 109.47070 * 296.86461 * 1 2 3 26 26 H 1.09001 * 109.47003 * 56.86019 * 1 2 3 27 27 H 1.08997 * 109.47141 * 239.99980 * 2 1 3 28 28 H 1.09008 * 109.47021 * 119.99810 * 2 1 3 29 29 H 1.08998 * 109.46867 * 300.00390 * 5 3 2 30 30 H 1.09000 * 109.46682 * 59.99676 * 5 3 2 31 31 H 1.00895 * 111.00156 * 56.04821 * 6 5 3 32 32 H 1.08999 * 109.47101 * 300.00469 * 7 6 5 33 33 H 1.09003 * 109.46542 * 59.99721 * 7 6 5 34 34 H 1.08001 * 119.87854 * 359.97150 * 9 8 7 35 35 H 1.08002 * 120.13110 * 180.27862 * 10 9 8 36 36 H 0.97004 * 120.00125 * 179.97438 * 15 14 12 37 37 H 1.07989 * 120.13060 * 179.97438 * 20 11 10 38 38 H 1.07994 * 119.87551 * 180.02562 * 21 20 11 39 39 H 1.09003 * 109.46802 * 176.83961 * 23 22 3 40 40 H 1.08991 * 109.47453 * 296.84579 * 23 22 3 41 41 H 1.09003 * 109.46970 * 56.84851 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9826 -0.8397 5 6 3.5645 1.4445 -0.1307 6 7 4.0541 2.8294 -0.1313 7 6 5.5172 2.8705 -0.2562 8 6 5.9817 4.3041 -0.2526 9 6 6.0957 4.9933 -1.4501 10 6 6.5133 6.3046 -1.4582 11 6 6.8365 6.9418 -0.2459 12 6 7.2732 8.2866 -0.2426 13 1 7.9086 8.6462 0.5533 14 6 6.8821 9.1519 -1.2707 15 7 5.8870 8.8275 -2.0555 16 14 7.7810 10.7699 -1.5223 17 1 8.9133 10.5664 -2.4612 18 1 6.8439 11.7741 -2.0870 19 1 8.3002 11.2557 -0.2186 20 6 6.7226 6.2307 0.9630 21 6 6.2966 4.9222 0.9478 22 8 1.6661 2.0799 1.2230 23 6 0.5266 2.9346 1.1082 24 1 -0.3634 -1.0260 -0.0563 25 1 -0.3633 0.4644 0.9168 26 1 -0.3633 0.5618 -0.8605 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 4.0018 0.9044 0.7090 30 1 3.8497 0.9582 -1.0636 31 1 3.7474 3.3217 0.6942 32 1 5.9685 2.3406 0.5826 33 1 5.8156 2.3938 -1.1900 34 1 5.8519 4.5006 -2.3797 35 1 6.5972 6.8411 -2.3918 36 1 5.6156 9.4274 -2.7679 37 1 6.9684 6.7099 1.8990 38 1 6.2080 4.3745 1.8743 39 1 0.2732 3.3360 2.0895 40 1 0.7547 3.7549 0.4278 41 1 -0.3175 2.3645 0.7200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399130884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:36 Heat of formation + Delta-G solvation = -46.152381 kcal Electronic energy + Delta-G solvation = -19281.256011 eV Core-core repulsion = 16353.007065 eV Total energy + Delta-G solvation = -2928.248946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.75585 -37.64710 -35.32994 -33.69360 -33.12931 -30.51110 -29.24234 -28.50595 -26.50694 -25.48714 -23.36407 -22.12185 -21.10392 -20.90184 -19.77731 -17.24420 -16.93233 -15.97242 -15.44797 -15.26502 -14.58938 -14.24274 -14.02407 -13.93858 -13.61232 -13.33857 -13.17386 -12.62072 -12.41955 -12.11734 -11.90736 -11.77681 -11.65920 -11.47395 -11.27487 -11.11862 -11.00906 -10.86874 -10.66282 -10.42707 -10.32945 -9.60721 -9.40997 -9.29562 -9.11776 -7.97263 -7.39423 -7.23393 -6.69885 -4.31455 2.78424 3.09266 3.12315 3.13142 3.21046 3.81486 3.96664 4.41381 4.71418 4.89370 4.97748 5.11985 5.26894 5.28894 5.45101 5.53158 5.63705 5.69632 5.72090 5.76806 5.78028 5.91373 5.93610 5.94635 6.03255 6.13954 6.31054 6.41016 6.49123 7.00184 7.12403 7.24292 7.33889 7.40701 7.48298 7.66781 7.82686 7.95605 8.10464 8.19605 8.35186 8.69484 8.94326 9.02521 10.24884 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.003509 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.875286 B = 7977.407738 C = 8243.493070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.090 3.910 4 H 0.070 0.930 5 C 0.056 3.944 6 N -0.684 5.684 7 C 0.124 3.876 8 C -0.210 4.210 9 C -0.081 4.081 10 C -0.164 4.164 11 C 0.112 3.888 12 C -0.465 4.465 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.796 5.796 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.225 4.225 21 C -0.086 4.086 22 O -0.383 6.383 23 C 0.028 3.972 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.347 0.653 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.279 0.721 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -11.919 1.578 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.031 3.969 4 H 0.088 0.912 5 C -0.073 4.073 6 N -0.316 5.316 7 C -0.003 4.003 8 C -0.211 4.211 9 C -0.100 4.100 10 C -0.183 4.183 11 C 0.110 3.890 12 C -0.495 4.495 13 H 0.094 0.906 14 C -0.142 4.142 15 N -0.421 5.421 16 Si 0.733 3.267 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.245 4.245 21 C -0.105 4.105 22 O -0.302 6.302 23 C -0.068 4.068 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.166 0.834 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.241 -11.768 0.881 14.394 hybrid contribution 0.330 0.565 0.492 0.819 sum -7.911 -11.203 1.373 13.783 Atomic orbital electron populations 1.21828 0.95793 1.01583 1.01874 1.21970 0.96331 0.97042 1.02609 1.22262 0.94883 0.92383 0.87331 0.91191 1.22111 0.93075 0.91684 1.00464 1.60609 1.11899 1.12338 1.46714 1.20556 0.85921 0.94986 0.98870 1.18925 1.13437 0.95027 0.93758 1.20503 0.99270 0.94781 0.95424 1.21299 1.05414 0.93075 0.98559 1.17628 0.88116 0.92591 0.90705 1.19586 1.27722 0.94656 1.07551 0.90573 1.25891 0.93565 1.00186 0.94567 1.69827 1.20423 1.36950 1.14919 0.86320 0.79990 0.80852 0.79566 1.19350 1.20371 1.18706 1.20955 1.11348 0.95259 0.96891 1.20372 0.99956 0.94941 0.95222 1.87859 1.47820 1.62200 1.32331 1.22887 0.87999 0.93430 1.02502 0.92758 0.92258 0.92867 0.91063 0.91272 0.95216 0.90467 0.83437 0.96418 0.92113 0.89500 0.86607 0.90981 0.89156 0.89887 0.90066 0.93468 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 2 C -0.14 -1.39 5.64 -26.73 -0.15 -1.54 16 3 C 0.09 1.09 2.54 -26.73 -0.07 1.03 16 4 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 5 C 0.06 0.77 5.42 -3.82 -0.02 0.75 16 6 N -0.68 -11.64 6.49 -115.06 -0.75 -12.39 16 7 C 0.12 2.27 5.80 -4.98 -0.03 2.24 16 8 C -0.21 -4.65 5.41 -104.33 -0.56 -5.21 16 9 C -0.08 -1.93 9.67 -39.66 -0.38 -2.31 16 10 C -0.16 -4.34 8.68 -38.87 -0.34 -4.68 16 11 C 0.11 3.04 5.56 -106.82 -0.59 2.45 16 12 C -0.47 -12.56 9.06 -37.74 -0.34 -12.90 16 13 H 0.08 1.98 7.89 -52.49 -0.41 1.57 16 14 C 0.08 1.92 5.17 -17.34 -0.09 1.83 16 15 N -0.80 -20.95 10.97 55.55 0.61 -20.34 16 16 Si 0.91 18.95 29.59 -169.99 -5.03 13.93 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.22 -5.64 9.80 -38.87 -0.38 -6.02 16 21 C -0.09 -1.96 9.67 -39.66 -0.38 -2.35 16 22 O -0.38 -5.15 9.46 -35.23 -0.33 -5.48 16 23 C 0.03 0.32 10.37 101.05 1.05 1.36 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.54 6.50 -51.93 -0.34 0.20 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.35 6.24 8.11 -39.29 -0.32 5.92 16 32 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 35 H 0.12 3.17 6.24 -52.49 -0.33 2.84 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.04 0.38 5.95 -51.93 -0.31 0.07 16 LS Contribution 335.60 15.07 5.06 5.06 Total: -1.00 -27.91 335.60 -9.14 -37.05 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.73 Total: 8.54 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.97 Total: -26.36 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: -0.14 Total: -32.73 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.33 Total: -5.48 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.91 -9.14 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399130884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.106 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds